Lag0037424 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0037424
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRibonuclease H
Locationchr2: 6089260 .. 6090432 (+)
RNA-Seq ExpressionLag0037424
SyntenyLag0037424
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGGATGGCTAAAAGGGGAAGGTAGTTACCAAACCTCCCAAAAGAAGGCAGAGAACGAGGATATAGAGAGATTGATTGGGCAGGAGGGGTCAGTCTTCACCGATGAGATAATGAGAGGGGAGGTGCCGCACAAATTCAAAGTACCAAACTTCCCGCAGTATGATGGGAAGAAGGATCCGAAACAGCACCTAGATGCATACCAGACTTGGATGGACTTTCATGGGGCGAACGAAGCAACAAGGTGCTGAGATTTTGAACTAATGTTCACAGGTTTAGCAAGGCAGTGGTTTGGCAAGGTCCTGCGAAGGTCAATAGGCTCGTTCAAAGAACTGGCCCGAGCGTTTGTTACGCAATTCCTAGGAGCTCGAAGTCGACAGAAGCCTCAAATCAACTTGCTGACAGTAAAGCAGGGGCCTCGGGAGGGCCTGAGGGATTATATTAACAGATTTAGCAACGAAGTTTTGCAGGTGGAGGGTTACGATGATGGAGTTGCTTTGACTGCTGTGATTTCAGGTTTGTAGGATGAAAGACTACTCAATTCAATTGGAGAGAGCCAACCTCGAACGTACGTGGAGTTCATGACCCGAGCATAAAGATACATAAGCACAGAGGAGCTGTTGAGATCCAAGCAGGAAGAAAGAGAGAGTCGGGGGATGTCAATATCAGACCGGCGTCGGGAATACAGGGGAAAGAGGCACCAGGGTGAGGGAAGAGGCCGGAGCCGACCTGAGCACCCCTCGGCCAATGGCCGATGCCGACCAGAAGCCAAGGAATTGCAAGGTCGTGCGGAGCCTAAGGCCAGATTCGACAGGTATACGCCACTAACAACTTCGCTTGAATAGGTTTTGGTCGCGATACAGGACACAAATCTGTTGAAACACCCAGAAAAGTTGAGATCAGATCCCGACAGGAGAAACATGAACAAATATTGCATGTTCCACGGAGATCACGACCATACAACCAGAGAATGCATCCAGTTACGAGATGAGATAGAAACCCTAATCCGAGAAGGTTACCTCAAGTCCCGGAGTCACCATTTCATGGTCCGGTCTTATGCAAACTCATTGCATAGTATACCCCCGCTCGCATGTCTACTACATGGACGCTTAGGATCAATACGTCTGTATCAAATACAAAGCGGGCCGTATCACATAGTGTTACCAGGATAA

mRNA sequence

ATGTCTGGATGGCTAAAAGGGGAAGGTAGTTACCAAACCTCCCAAAAGAAGGCAGAGAACGAGGATATAGAGAGATTGATTGGGCAGGAGGGGTCAGTCTTCACCGATGAGATAATGAGAGGGGAGGTGCCGCACAAATTCAAAGTACCAAACTTCCCGCAGTATGATGGGAAGAAGGATCCGAAACAGCACCTAGATGCATACCAGACTTGGATGGACTTTCATGGGGCGAACGAAGCAACAAGGTCAATAGGCTCGTTCAAAGAACTGGCCCGAGCGTTTGTTACGCAATTCCTAGGAGCTCGAAGTCGACAGAAGCCTCAAATCAACTTGCTGACAGTAAAGCAGGGGCCTCGGGAGGGCCTGAGGGATTATATTAACAGATTTAGCAACGAAGTTTTGCAGGTGGAGGGTTACGATGATGGAGTTGCTTTGACTGCTGTGATTTCAGAGGAGCTGTTGAGATCCAAGCAGGAAGAAAGAGAGAGTCGGGGGATGTCAATATCAGACCGGCGTCGGGAATACAGGGGAAAGAGGCACCAGGGTGAGGGAAGAGGCCGGAGCCGACCTGAGCACCCCTCGGCCAATGGCCGATGCCGACCAGAAGCCAAGGAATTGCAAGGTCGTGCGGAGCCTAAGGCCAGATTCGACAGGAGAAACATGAACAAATATTGCATGTTCCACGGAGATCACGACCATACAACCAGAGAATGCATCCAGTTACGAGATGAGATAGAAACCCTAATCCGAGAAGGTTACCTCAAGTCCCGGAGTCACCATTTCATGGTCCGGTCTTATGCAAACTCATTGCATAGTATACCCCCGCTCGCATGTCTACTACATGGACGCTTAGGATCAATACGTCTGTATCAAATACAAAGCGGGCCGTATCACATAGTGTTACCAGGATAA

Coding sequence (CDS)

ATGTCTGGATGGCTAAAAGGGGAAGGTAGTTACCAAACCTCCCAAAAGAAGGCAGAGAACGAGGATATAGAGAGATTGATTGGGCAGGAGGGGTCAGTCTTCACCGATGAGATAATGAGAGGGGAGGTGCCGCACAAATTCAAAGTACCAAACTTCCCGCAGTATGATGGGAAGAAGGATCCGAAACAGCACCTAGATGCATACCAGACTTGGATGGACTTTCATGGGGCGAACGAAGCAACAAGGTCAATAGGCTCGTTCAAAGAACTGGCCCGAGCGTTTGTTACGCAATTCCTAGGAGCTCGAAGTCGACAGAAGCCTCAAATCAACTTGCTGACAGTAAAGCAGGGGCCTCGGGAGGGCCTGAGGGATTATATTAACAGATTTAGCAACGAAGTTTTGCAGGTGGAGGGTTACGATGATGGAGTTGCTTTGACTGCTGTGATTTCAGAGGAGCTGTTGAGATCCAAGCAGGAAGAAAGAGAGAGTCGGGGGATGTCAATATCAGACCGGCGTCGGGAATACAGGGGAAAGAGGCACCAGGGTGAGGGAAGAGGCCGGAGCCGACCTGAGCACCCCTCGGCCAATGGCCGATGCCGACCAGAAGCCAAGGAATTGCAAGGTCGTGCGGAGCCTAAGGCCAGATTCGACAGGAGAAACATGAACAAATATTGCATGTTCCACGGAGATCACGACCATACAACCAGAGAATGCATCCAGTTACGAGATGAGATAGAAACCCTAATCCGAGAAGGTTACCTCAAGTCCCGGAGTCACCATTTCATGGTCCGGTCTTATGCAAACTCATTGCATAGTATACCCCCGCTCGCATGTCTACTACATGGACGCTTAGGATCAATACGTCTGTATCAAATACAAAGCGGGCCGTATCACATAGTGTTACCAGGATAA

Protein sequence

MSGWLKGEGSYQTSQKKAENEDIERLIGQEGSVFTDEIMRGEVPHKFKVPNFPQYDGKKDPKQHLDAYQTWMDFHGANEATRSIGSFKELARAFVTQFLGARSRQKPQINLLTVKQGPREGLRDYINRFSNEVLQVEGYDDGVALTAVISEELLRSKQEERESRGMSISDRRREYRGKRHQGEGRGRSRPEHPSANGRCRPEAKELQGRAEPKARFDRRNMNKYCMFHGDHDHTTRECIQLRDEIETLIREGYLKSRSHHFMVRSYANSLHSIPPLACLLHGRLGSIRLYQIQSGPYHIVLPG
Homology
BLAST of Lag0037424 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 165.6 bits (418), Expect = 6.5e-37
Identity = 119/316 (37.66%), Postives = 156/316 (49.37%), Query Frame = 0

Query: 8   EGSYQTSQKKAENEDIERLIGQEGSVFTDEIMRGEVPHKFKVPNFPQYDGKKDPKQHLDA 67
           E S +    K +  D+E L+ Q  S FT+EIMR +VP KFK+P   Q+D   DP  HLDA
Sbjct: 154 ESSEKRHSHKEKGFDLEELLDQADSPFTEEIMREKVPPKFKLPTVKQFDXTTDPVDHLDA 213

Query: 68  YQTWMDFHGANEATR----------------------SIGSFKELARAFVTQFLGARSRQ 127
           Y+ WMD +G +EA R                      SI SFK LARAFVTQF+G R R 
Sbjct: 214 YREWMDIYGVSEAVRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRS 273

Query: 128 KPQINLLTVKQGPREGLRDYINRFSNEVLQVEGYDDGVALTA------------------ 187
           +P   LLT+KQ   E LRDY+ RF+ E LQVEG  D V+L A                  
Sbjct: 274 RPVAYLLTIKQRTTESLRDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGKRT 333

Query: 188 --VISEELLRSKQ---------EERESRGMSISDRRREYRGKRHQG---EGRGRSRPEHP 247
               SE L R+++          +RE  G   +D +RE  G + QG   E R RS  + P
Sbjct: 334 PNTFSEALSRAQRYMSAGEFFYSKREPDGKR-TDPKRERSGDKPQGSRWEKRDRSSQKDP 393

Query: 248 SAN-----------GRCRPEAKE---LQGRAEPKARFDRRNMNKYCMFHGDHDHTTRECI 256
                          +   E K+   L+     KA   +R+  +YC+FH DH H T++C 
Sbjct: 394 PRKFEKYTPTTVPIEQVLMEIKDQRLLKWPERMKASSAKRSKGRYCLFHRDHGHATQDCF 453

BLAST of Lag0037424 vs. NCBI nr
Match: XP_024041095.1 (uncharacterized protein LOC112098853 [Citrus clementina])

HSP 1 Score: 134.0 bits (336), Expect = 2.1e-27
Identity = 102/329 (31.00%), Postives = 148/329 (44.98%), Query Frame = 0

Query: 8   EGSYQTSQKKAENEDIERLIGQEGSVFTDEIMRGEVPHKFKVPNFPQYDGKKDPKQHLDA 67
           E   +  Q   E   ++ +  +    FT +IM  + P +F +P    YDG++DP +HL+ 
Sbjct: 151 ERMQRLEQMVREMGPLDDVTAEHEPPFTSDIMVAKYPPRFHLPQMEPYDGQRDPTEHLEL 210

Query: 68  YQTWMDFHGANEA----------------------TRSIGSFKELARAFVTQFLGARSRQ 127
           Y+T M+  GA++A                        SI SF +L+R F + F  AR R 
Sbjct: 211 YRTLMEVQGASQAILCRAFPLTLVGAARRWFRRLQPHSISSFGDLSREFTSHFRSARQRG 270

Query: 128 KPQINLLTVKQGPREGLRDYINRFSNEVLQVEGYDDGVALTAVI---------------- 187
           KP   LLTVKQ   E LRDYI R++NE+ QV+GYDDG+AL+ ++                
Sbjct: 271 KPVTYLLTVKQQEGETLRDYIRRYNNEITQVDGYDDGIALSGIMEGLRMGKLWWSVSKRP 330

Query: 188 ----------------SEELLRSKQEER--ESRGMSISDRRREYRGKR-HQGEGRGRSRP 247
                           +EE  +++ +E+   ++G    D +RE R  R  Q   R + RP
Sbjct: 331 PTSYSEMLARAEKYANAEERFKNRNQEKGESTKGKKKKDDQRERRVVRPDQSLRRNQFRP 390

Query: 248 EHPSANGRCRPEA-------KELQGRAEP-----------------KARFDRRNMNKYCM 256
              S     RP          EL    E                  K    RRN NKYC 
Sbjct: 391 GERSEVRDTRPRLASQFTNFTELNTPREQILMQVRNPTLFRTPPPMKTNPSRRNPNKYCH 450

BLAST of Lag0037424 vs. NCBI nr
Match: XP_022159109.1 (uncharacterized protein LOC111025548 [Momordica charantia])

HSP 1 Score: 126.3 bits (316), Expect = 4.4e-25
Identity = 92/238 (38.66%), Postives = 122/238 (51.26%), Query Frame = 0

Query: 8   EGSYQTSQKKAENEDIERLIGQEGSVFTDEIMRGEVPHKFKVPNFPQYDGKKDPKQHLDA 67
           E S +   +K +  D+E L+GQ  S FT+EIMR +VP KFK+P    +DG  +P  HLDA
Sbjct: 59  ESSEKRHNQKEKGFDLEELLGQADSPFTEEIMREKVPPKFKLPTVKPFDGMTEPVDHLDA 118

Query: 68  YQTWMDFHGANEATR----------------------SIGSFKELARAFVTQFLGARSRQ 127
           Y+ WMD +G ++A R                      SI SFK LARAF+TQF+G R R 
Sbjct: 119 YREWMDIYGVSDAIRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFMTQFVGGRCRS 178

Query: 128 KPQINLLTVKQGPREGLRDYINRFSNEVLQVEGYDDGVALTAVIS---EELLR------- 187
           +P   LLT+KQ   E L DY+ RF+ E LQ+EG  D V+L A +S   +E L        
Sbjct: 179 RPVAYLLTIKQRTAESLHDYVARFNEEKLQLEGLTDAVSLLAFMSGVRDEHLSFSFEKRT 238

Query: 188 ----SKQEERESRGMSISD---RRREYRGKR-HQGEGRGRSRPEHPSANGRCRPEAKE 206
               S+   R  R MS S+    +RE  GKR  Q   R   +P+      R R   K+
Sbjct: 239 PSTFSEALSRAQRYMSASEFCYSKREPDGKRTDQKRERSGDKPQGSRWEKRDRGSQKD 296

BLAST of Lag0037424 vs. NCBI nr
Match: XP_024024428.1 (uncharacterized protein LOC112092448 [Morus notabilis])

HSP 1 Score: 121.7 bits (304), Expect = 1.1e-23
Identity = 87/277 (31.41%), Postives = 125/277 (45.13%), Query Frame = 0

Query: 34  FTDEIMRGEVPHKFKVPNFPQYDGKKDPKQHLDAYQTWMDFHGANEAT------------ 93
           FT+ I+R  +P K+K P  P YDG+ DP  HL+ Y   M  +G  E              
Sbjct: 40  FTENIIRVPLPDKYKSPPIPLYDGRSDPDDHLEVYTGHMVLYGYPEEVMCRTFRNHLSDS 99

Query: 94  ----------RSIGSFKELARAFVTQFLGARSRQKPQINLLTVKQGPREGLRDYINRFSN 153
                      SI S+ +L   F+TQF+G +    P+ NL  V QGP E L+D+I RF  
Sbjct: 100 ARRWFRSLKPNSITSWDDLKNDFLTQFIGVKKYIPPKQNLSRVYQGPNESLKDWIARFGE 159

Query: 154 EVLQVEGYDDGVALTAVIS---------------------------EELLRSKQEERESR 213
           +V   EG  D VAL   +S                           +  + +++ ++  +
Sbjct: 160 QVTATEGISDEVALMGALSSMKKDIPYSTDLGRRPPHAYQEFLTRAQGFINAEEAKKALK 219

Query: 214 GMSISDRRREYR-------GKRHQGEGRGRSRPEHPSANGRCRPEAKELQGRAEPKARFD 255
             + +  + E R       GK+H+G  + ++ P H     R  P       +++P     
Sbjct: 220 SKAATPAKEEVRQASSQNNGKKHRGPPQVQAEPSHLQVLRRPPPL------KSDPA---- 279

BLAST of Lag0037424 vs. NCBI nr
Match: XP_030955724.1 (uncharacterized protein LOC115977839 [Quercus lobata])

HSP 1 Score: 119.8 bits (299), Expect = 4.1e-23
Identity = 92/297 (30.98%), Postives = 135/297 (45.45%), Query Frame = 0

Query: 23  IERLIGQEGSVFTDEIMRGEVPHKFKVPNFPQYDGKKDPKQHLDAYQTWMDFHGANE--- 82
           IE L+ +  S FT  I    +P KFK+P+   YDG +DP  H+  ++T M   G  +   
Sbjct: 21  IEDLVHRTDSPFTASINGHPLPSKFKLPSLDSYDGTRDPFDHIATFKTTMHLQGVPDEIM 80

Query: 83  -------------------ATRSIGSFKELARAFVTQFLGARSRQKPQINLLTVKQGPRE 142
                                 S+ SF+EL++ FV  F+G +  ++   +LLT++QG  E
Sbjct: 81  CRAFPTTLKGPARVWFSKIPPSSVSSFEELSKLFVNNFIGGQRHKRSSSSLLTIEQGENE 140

Query: 143 GLRDYINRFSNEVLQVEGYDDGVALTAV---ISEELLRSKQEERESRGMSISDRRREYRG 202
            LR +I RF+ E L V+  DD + L A    I+ +L   K  E+E + M+   R+R  R 
Sbjct: 141 SLRSFITRFNREALSVDEVDDKLLLAAFHNGINSDLFIHKLYEKEPQTMAELKRKRAERM 200

Query: 203 KRH----------QGEGRGRSRPEHPSAN----GRCR----------------PEAKELQ 262
           + H            +GR   R E         GR +                 +   L+
Sbjct: 201 EAHPVRHSEQAPRPKKGRTEDRKERDGRKTGPLGRSQNYTPLNAPLNQVLMQIKDDPSLK 260

Query: 263 GRAEPKARFDRRNMNKYCMFHGDHDHTTRECIQLRDEIETLIREGYLKSRSHHFMVR 265
              + K   ++RN NKYC FH DH H T EC  L+ +IE LIR+G LK    HF+ R
Sbjct: 261 WPEKMKGDPNKRNKNKYCRFHRDHGHDTDECYDLKQQIENLIRQGKLK----HFVGR 313

BLAST of Lag0037424 vs. ExPASy TrEMBL
Match: A0A6J1DWY0 (uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025293 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 3.2e-37
Identity = 119/316 (37.66%), Postives = 156/316 (49.37%), Query Frame = 0

Query: 8   EGSYQTSQKKAENEDIERLIGQEGSVFTDEIMRGEVPHKFKVPNFPQYDGKKDPKQHLDA 67
           E S +    K +  D+E L+ Q  S FT+EIMR +VP KFK+P   Q+D   DP  HLDA
Sbjct: 154 ESSEKRHSHKEKGFDLEELLDQADSPFTEEIMREKVPPKFKLPTVKQFDXTTDPVDHLDA 213

Query: 68  YQTWMDFHGANEATR----------------------SIGSFKELARAFVTQFLGARSRQ 127
           Y+ WMD +G +EA R                      SI SFK LARAFVTQF+G R R 
Sbjct: 214 YREWMDIYGVSEAVRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRS 273

Query: 128 KPQINLLTVKQGPREGLRDYINRFSNEVLQVEGYDDGVALTA------------------ 187
           +P   LLT+KQ   E LRDY+ RF+ E LQVEG  D V+L A                  
Sbjct: 274 RPVAYLLTIKQRTTESLRDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGKRT 333

Query: 188 --VISEELLRSKQ---------EERESRGMSISDRRREYRGKRHQG---EGRGRSRPEHP 247
               SE L R+++          +RE  G   +D +RE  G + QG   E R RS  + P
Sbjct: 334 PNTFSEALSRAQRYMSAGEFFYSKREPDGKR-TDPKRERSGDKPQGSRWEKRDRSSQKDP 393

Query: 248 SAN-----------GRCRPEAKE---LQGRAEPKARFDRRNMNKYCMFHGDHDHTTRECI 256
                          +   E K+   L+     KA   +R+  +YC+FH DH H T++C 
Sbjct: 394 PRKFEKYTPTTVPIEQVLMEIKDQRLLKWPERMKASSAKRSKGRYCLFHRDHGHATQDCF 453

BLAST of Lag0037424 vs. ExPASy TrEMBL
Match: A0A6J1E1E7 (uncharacterized protein LOC111025548 OS=Momordica charantia OX=3673 GN=LOC111025548 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.1e-25
Identity = 92/238 (38.66%), Postives = 122/238 (51.26%), Query Frame = 0

Query: 8   EGSYQTSQKKAENEDIERLIGQEGSVFTDEIMRGEVPHKFKVPNFPQYDGKKDPKQHLDA 67
           E S +   +K +  D+E L+GQ  S FT+EIMR +VP KFK+P    +DG  +P  HLDA
Sbjct: 59  ESSEKRHNQKEKGFDLEELLGQADSPFTEEIMREKVPPKFKLPTVKPFDGMTEPVDHLDA 118

Query: 68  YQTWMDFHGANEATR----------------------SIGSFKELARAFVTQFLGARSRQ 127
           Y+ WMD +G ++A R                      SI SFK LARAF+TQF+G R R 
Sbjct: 119 YREWMDIYGVSDAIRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFMTQFVGGRCRS 178

Query: 128 KPQINLLTVKQGPREGLRDYINRFSNEVLQVEGYDDGVALTAVIS---EELLR------- 187
           +P   LLT+KQ   E L DY+ RF+ E LQ+EG  D V+L A +S   +E L        
Sbjct: 179 RPVAYLLTIKQRTAESLHDYVARFNEEKLQLEGLTDAVSLLAFMSGVRDEHLSFSFEKRT 238

Query: 188 ----SKQEERESRGMSISD---RRREYRGKR-HQGEGRGRSRPEHPSANGRCRPEAKE 206
               S+   R  R MS S+    +RE  GKR  Q   R   +P+      R R   K+
Sbjct: 239 PSTFSEALSRAQRYMSASEFCYSKREPDGKRTDQKRERSGDKPQGSRWEKRDRGSQKD 296

BLAST of Lag0037424 vs. ExPASy TrEMBL
Match: A0A7J0FPQ8 (Ribonuclease H OS=Actinidia rufa OX=165716 GN=Acr_14g0001790 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 4.4e-23
Identity = 87/281 (30.96%), Postives = 130/281 (46.26%), Query Frame = 0

Query: 23  IERLIGQEGSVFTDEIMRGEVPHKFKVP-NFPQYDGKKDPKQHLDAYQTWMDFHGANE-- 82
           ++ L+ Q    FT+ ++R  +  KFK+P     Y+GK DP  HLD+Y++ M   G ++  
Sbjct: 168 VDALVRQTDPPFTERVLRTRISSKFKLPTQLGIYEGKTDPMDHLDSYKSLMSLQGCSDEV 227

Query: 83  --------------------ATRSIGSFKELARAFVTQFLGARSRQKPQINLLTVKQGPR 142
                               +  ++ SF EL+R FV  F+  R+RQK   +L TV Q   
Sbjct: 228 MCEAFSATLKGPARSWFRKLSPGTVDSFGELSRLFVANFMSCRNRQKNASHLFTVHQKET 287

Query: 143 EGLRDYINRFSNEVLQVEG-YDDGVALTAVISEELLRSKQEER---ESRGMSISDRRREY 202
           E L+D++ RF+  VL VE   D   A   + +EEL  +K+  R   + +      RR +Y
Sbjct: 288 ESLKDFVKRFNQAVLDVEDPSDKSKADKYIAAEELAEAKRRRRGKEDHKRKEPDTRRVDY 347

Query: 203 ----------RGKRHQGEGRGRSRPEHPSAN--------GRCRPEAKE---LQGRAEPKA 256
                     R  +     R R+ P  P  N         +   E K    ++   + K 
Sbjct: 348 REEMRYKKPNRDSKRSNNRRPRTPPRRPEFNLPSLNTPVAQVLSEIKHEKFIKWPGKIKT 407

BLAST of Lag0037424 vs. ExPASy TrEMBL
Match: A0A2N9EW93 (Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6965 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 4.4e-23
Identity = 89/291 (30.58%), Postives = 137/291 (47.08%), Query Frame = 0

Query: 12  QTSQKKAENEDIERLIGQEGSVFTDEIMRGEVPHKFKVPNFPQYDGKKDPKQHLDAYQTW 71
           Q   K A+N D+  L+ +  S FT  I    +P KFKVP    +DG KDP  +LD+++T 
Sbjct: 96  QVKAKAAKNLDM--LVHRSESPFTKRIDEYPLPAKFKVPQLETFDGFKDPLDYLDSFRTI 155

Query: 72  MDFHGANE----------------------ATRSIGSFKELARAFVTQFLGARSRQKPQI 131
           M  HG ++                       T SI +F +L+RAF+  F+G R   +P  
Sbjct: 156 MRLHGVSDEIMCRTFPTNLRGSARTWFNQLETGSIDTFAQLSRAFIDNFIGGRRSARPAN 215

Query: 132 NLLTVKQGPREGLRDYINRFSNEVLQVEGYDDGVALTAV--------------------I 191
            LL ++Q   E LR Y+ RF+ E +Q++  ++ VALTA                     +
Sbjct: 216 YLLNIRQREGESLRSYVQRFNKEAVQIDEPNEYVALTAFNAGLLKGDFLFQLCKDPPKSM 275

Query: 192 SEELLRSK-----QEERESRGMSISDRRREYRGKRHQGEGRGRSRPEHPSANGR-CRPEA 251
           SE +  ++     ++  E+R   +S +R+E   +R        S+ ++P    +      
Sbjct: 276 SELMYEAQKFINAEDAFEARDEFLSRKRKEPEDRRFDSSRNKSSKQDYPKTERKNASSSN 335

Query: 252 KELQGRAEPKARFDRRNMNKYCMFHGDHDHTTRECIQLRDEIETLIREGYL 255
           +  QG      R D RN+  YC FH DH HTT +C  L+ +IE LIR+G L
Sbjct: 336 RRGQGSFVQTRRRDLRNL--YCRFHRDHGHTTEDCFALKQQIEALIRQGKL 382

BLAST of Lag0037424 vs. ExPASy TrEMBL
Match: A0A1R3I5P8 (Retrotransposon gag protein OS=Corchorus olitorius OX=93759 GN=COLO4_24943 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 5.8e-23
Identity = 86/282 (30.50%), Postives = 133/282 (47.16%), Query Frame = 0

Query: 22  DIERLIGQEGSVFTDEIMRGEVPHKFKVPNFPQYDGKKDPKQHLDAYQTWMDFHGANEAT 81
           D++ L   E S FT+EI R + P  F++P    YDG  DP  HL+ ++T M   GA++  
Sbjct: 132 DVDELRLLETSPFTEEIDRAQPPKGFRMPVIEAYDGTSDPFDHLELFRTNMLIQGADDPL 191

Query: 82  RSIGSFKELARAFVTQFLGARSRQKPQINLLTVKQGPREGLRDYINRFSNEVLQVEGYDD 141
            SI SFKEL ++F+T F+ +R  +K  + L+ ++  P E LRDY+ RF+ E LQV+  + 
Sbjct: 192 ISISSFKELGQSFLTHFISSRRAKKTSLGLMNIRHRPNESLRDYVMRFNAEALQVKDLEQ 251

Query: 142 GVALTAVIS----------------------EELLRSKQEERESRGMSISDRRREYR--- 201
            VA+ A+++                      E LLR+++       M++   + ++R   
Sbjct: 252 SVAVAALMNGLRDDEFQLKFFLSKKTPKTLLELLLRAEKYINTEENMAVKIEKNDHRNDK 311

Query: 202 -----------GKRHQGEG--RGRSRPEH----------PSANGRCRPEAKELQGRAEPK 256
                      GKR    G   G   PE           P A    + E   L    +P 
Sbjct: 312 KRGREVEADQGGKRFSKTGGYSGARSPERKYDNYTPLNAPRARILMQIERDPLLKWPKPM 371

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022158830.16.5e-3737.66uncharacterized protein LOC111025293 [Momordica charantia][more]
XP_024041095.12.1e-2731.00uncharacterized protein LOC112098853 [Citrus clementina][more]
XP_022159109.14.4e-2538.66uncharacterized protein LOC111025548 [Momordica charantia][more]
XP_024024428.11.1e-2331.41uncharacterized protein LOC112092448 [Morus notabilis][more]
XP_030955724.14.1e-2330.98uncharacterized protein LOC115977839 [Quercus lobata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DWY03.2e-3737.66uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1E1E72.1e-2538.66uncharacterized protein LOC111025548 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A7J0FPQ84.4e-2330.96Ribonuclease H OS=Actinidia rufa OX=165716 GN=Acr_14g0001790 PE=4 SV=1[more]
A0A2N9EW934.4e-2330.58Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6965 PE=4 SV=1[more]
A0A1R3I5P85.8e-2330.50Retrotransposon gag protein OS=Corchorus olitorius OX=93759 GN=COLO4_24943 PE=4 ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 231..251
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 157..212
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 69..137
e-value: 1.0E-5
score: 25.7

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0037424.1Lag0037424.1mRNA