Lag0037080 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0037080
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionArabinogalactan peptide
Locationchr2: 3263890 .. 3264303 (+)
RNA-Seq ExpressionLag0037080
SyntenyLag0037080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCTGTCACTCAACCAATGGCCAGCTTGTAACTCGGGCAGCTGCCCGTCCTGCCCGATTCTCTCTTTTCCACTCGTTTTTAAGCCGCCCTCTTTCTTTATATAAACAGCCCCACCGTTTTCTTTTTCCGTTGCCAAAGTTCCATTTCATTCTTATAAGTCTTTCAGTTTTCTTCAGTCTATTTTCTCTCAAAACCCTAGAAATTTTCACAGCAATGGCCGCCGTCTCCAACGCTTCCTTTATGGCTCTTGTAGCTGTTCTGTTCGCCGTCCTCTCCATTGCCGTCGCGCAATCTGCCGAGTCTCCTGCTCCCCCACCGGCTTCTCCGGCTACCTCTGTTGTGCCGTCGTTGAGCTTCGCTTGCGTTGGTGCTTTCGTCGCTCTCGTCTTCGGATCTGCACTTAAGGCTTGA

mRNA sequence

ATGAGCTGTCACTCAACCAATGGCCAGCTTGTAACTCGGGCAGCTGCCCGTCCTGCCCGATTCTCTCTTTTCCACTCGTTTTTAAGCCGCCCTCTTTCTTTATATAAACAGCCCCACCGTTTTCTTTTTCCGTTGCCAAAGTTCCATTTCATTCTTATAAGTCTTTCAGTTTTCTTCAGTCTATTTTCTCTCAAAACCCTAGAAATTTTCACAGCAATGGCCGCCGTCTCCAACGCTTCCTTTATGGCTCTTGTAGCTGTTCTGTTCGCCGTCCTCTCCATTGCCGTCGCGCAATCTGCCGAGTCTCCTGCTCCCCCACCGGCTTCTCCGGCTACCTCTGTTGTGCCGTCGTTGAGCTTCGCTTGCGTTGGTGCTTTCGTCGCTCTCGTCTTCGGATCTGCACTTAAGGCTTGA

Coding sequence (CDS)

ATGAGCTGTCACTCAACCAATGGCCAGCTTGTAACTCGGGCAGCTGCCCGTCCTGCCCGATTCTCTCTTTTCCACTCGTTTTTAAGCCGCCCTCTTTCTTTATATAAACAGCCCCACCGTTTTCTTTTTCCGTTGCCAAAGTTCCATTTCATTCTTATAAGTCTTTCAGTTTTCTTCAGTCTATTTTCTCTCAAAACCCTAGAAATTTTCACAGCAATGGCCGCCGTCTCCAACGCTTCCTTTATGGCTCTTGTAGCTGTTCTGTTCGCCGTCCTCTCCATTGCCGTCGCGCAATCTGCCGAGTCTCCTGCTCCCCCACCGGCTTCTCCGGCTACCTCTGTTGTGCCGTCGTTGAGCTTCGCTTGCGTTGGTGCTTTCGTCGCTCTCGTCTTCGGATCTGCACTTAAGGCTTGA

Protein sequence

MSCHSTNGQLVTRAAARPARFSLFHSFLSRPLSLYKQPHRFLFPLPKFHFILISLSVFFSLFSLKTLEIFTAMAAVSNASFMALVAVLFAVLSIAVAQSAESPAPPPASPATSVVPSLSFACVGAFVALVFGSALKA
Homology
[Close]
BLAST of Lag0037080 vs. NCBI nr
Match: KAG7024335.1 (hypothetical protein SDJN02_13149, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 108.6 bits (270), Expect = 4.3e-20
Identity = 69/83 (83.13%), Postives = 72/83 (86.75%), Query Frame = 0 

Query: 55  LSVFFSLFSLKTLEIFTAMAAVSNASFMALVAVLFAVLSIAVAQSAESPAPPPASPATSV 114
           LS+FF    L TLEIF AMAAVS  SFMALVAVLF V+S+AVAQSAESPAP PASPATSV
Sbjct: 8   LSIFFGF--LLTLEIFRAMAAVSKTSFMALVAVLFTVVSVAVAQSAESPAPAPASPATSV 67

Query: 115 VPSLSFACVGAFVALVFGSALKA 138
           VPSLS ACVGAFVALVFGSALKA
Sbjct: 68  VPSLSVACVGAFVALVFGSALKA 88

[Close]
BLAST of Lag0037080 vs. NCBI nr
Match: KAG6591454.1 (hypothetical protein SDJN03_13800, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102.8 bits (255), Expect = 2.4e-18
Identity = 62/70 (88.57%), Postives = 64/70 (91.43%), Query Frame = 0 

Query: 68  EIFTAMAAVSNASFMALVAVLFAVLSIAVAQSAESPAPPPASPATSVVPSLSFACVGAFV 127
           EIF AMAAVS  SFMALVAVLF V+S+AVAQSAESPAP PASPATSVVPSLS ACVGAFV
Sbjct: 23  EIFRAMAAVSKTSFMALVAVLFTVVSVAVAQSAESPAPAPASPATSVVPSLSVACVGAFV 82

Query: 128 ALVFGSALKA 138
           ALVFGSALKA
Sbjct: 83  ALVFGSALKA 92

[Close]
BLAST of Lag0037080 vs. NCBI nr
Match: KGN55315.1 (hypothetical protein Csa_012200 [Cucumis sativus] >BAA08394.1 CRG16 [Cucumis sativus] >BAA11428.1 CRG16 [Cucumis sativus])

HSP 1 Score: 100.9 bits (250), Expect = 9.0e-18
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 0 

Query: 73  MAAVSNASFMALVAVLFAVLSIAVAQSAESPAPPPASPATSVVPSLSFACVGAFVALVFG 132
           MAAVS  SFMALVAVLFAVLS+AVAQSAESPAPPPASPA SVVPSLSFACVGAF+AL+FG
Sbjct: 1   MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG 60

Query: 133 SALKA 138
           SALKA
Sbjct: 61  SALKA 65

[Close]
BLAST of Lag0037080 vs. NCBI nr
Match: KAG6598305.1 (hypothetical protein SDJN03_08083, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.8 bits (151), Expect = 2.7e-06
Identity = 46/90 (51.11%), Postives = 60/90 (66.67%), Query Frame = 0 

Query: 54  SLSVFFSLFSLKT-------LEIFTAMAAVSNASFMALVAVLFAVLSIAVAQSAESPAPP 113
           SL++F SL S  +        +I  +MA VS AS +AL+A++FAV S+A   + E+PAP 
Sbjct: 42  SLNLFRSLSSSPSSRRNHPNRQISESMAGVSQASLVALIAIVFAVASVA---ATEAPAPS 101

Query: 114 PASPATSVVPSLSFACVGAFVALVFGSALK 137
           PASPATS+ PS   ACV AFVAL FGS L+
Sbjct: 102 PASPATSIAPSFVSACVAAFVALAFGSTLR 128

[Close]
BLAST of Lag0037080 vs. NCBI nr
Match: XP_040998978.1 (probable protein phosphatase 2C 72 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 58.9 bits (141), Expect = 3.9e-05
Identity = 40/66 (60.61%), Postives = 48/66 (72.73%), Query Frame = 0 

Query: 75  AVSNASFMALVAVLFAVLSI---AVAQSAESPAPPPASPATSVVPSLSFACVGAFVALVF 134
           AVS AS MAL+AV FAVLS+   A AQ+ E+PAP P SPA S  PSL+FA +G+ VAL F
Sbjct: 2   AVSKASLMALLAVTFAVLSLFGAAQAQTLEAPAPSPTSPAVSTSPSLAFAFLGSVVALAF 61

Query: 135 GSALKA 138
           GS  +A
Sbjct: 62  GSGRRA 67

The following BLAST results are available for this feature:
BLAST of Lag0037080 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7024335.14.3e-2083.13hypothetical protein SDJN02_13149, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6591454.12.4e-1888.57hypothetical protein SDJN03_13800, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN55315.19.0e-1890.77hypothetical protein Csa_012200 [Cucumis sativus] >BAA08394.1 CRG16 [Cucumis sat... [more]
KAG6598305.12.7e-0651.11hypothetical protein SDJN03_08083, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_040998978.13.9e-0560.61probable protein phosphatase 2C 72 [Juglans microcarpa x Juglans regia][more]
BLAST of Lag0037080 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0037080.1Lag0037080.1mRNA