Lag0036842 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0036842
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr2: 1580229 .. 1580576 (-)
RNA-Seq Expression	Lag0036842
Synteny	Lag0036842

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGTGGCAAGGTTTGATATTGACAAATTTGATGGGAAAGGAGACTTTGATCTCTGGAAGGCAAAGATAAAGGCAATCCTTGGACAACAGAAAGCCTTACATGCCCTAACTGACCCGTCAAAGCTACCTGCCACAGTAACTGAAGGAGATCTTGAAACTATGAATATGACAGCTTATGGGACGATTATTCTGAATCTCAGCAACAGTGTCTTAAGACAAGTGATTGATGAAGAAACTCCTCAAAAGATATGGAAGAAGCTCAACGAATTGTATGAGGTAAAAGATGCTCATAATAAGATGTATATGAGAGAGAAGTTTTTTTACCTTCAAGATGGATCCGGCTAA

mRNA sequence

ATGGTTGTGGCAAGGTTTGATATTGACAAATTTGATGGGAAAGGAGACTTTGATCTCTGGAAGGCAAAGATAAAGGCAATCCTTGGACAACAGAAAGCCTTACATGCCCTAACTGACCCGTCAAAGCTACCTGCCACAGTAACTGAAGGAGATCTTGAAACTATGAATATGACAGCTTATGGGACGATTATTCTGAATCTCAGCAACAGTGTCTTAAGACAAGTGATTGATGAAGAAACTCCTCAAAAGATATGGAAGAAGCTCAACGAATTGTATGAGGTAAAAGATGCTCATAATAAGATGTATATGAGAGAGAAGTTTTTTTACCTTCAAGATGGATCCGGCTAA

Coding sequence (CDS)

ATGGTTGTGGCAAGGTTTGATATTGACAAATTTGATGGGAAAGGAGACTTTGATCTCTGGAAGGCAAAGATAAAGGCAATCCTTGGACAACAGAAAGCCTTACATGCCCTAACTGACCCGTCAAAGCTACCTGCCACAGTAACTGAAGGAGATCTTGAAACTATGAATATGACAGCTTATGGGACGATTATTCTGAATCTCAGCAACAGTGTCTTAAGACAAGTGATTGATGAAGAAACTCCTCAAAAGATATGGAAGAAGCTCAACGAATTGTATGAGGTAAAAGATGCTCATAATAAGATGTATATGAGAGAGAAGTTTTTTTACCTTCAAGATGGATCCGGCTAA

Protein sequence

MVVARFDIDKFDGKGDFDLWKAKIKAILGQQKALHALTDPSKLPATVTEGDLETMNMTAYGTIILNLSNSVLRQVIDEETPQKIWKKLNELYEVKDAHNKMYMREKFFYLQDGSG

Homology

[Close]

BLAST of Lag0036842 vs. NCBI nr
Match: XP_038880370.1 (uncharacterized protein LOC120072018 [Benincasa hispida])

HSP 1 Score: 134.4 bits (337), Expect = 6.1e-28
Identity = 62/108 (57.41%), Postives = 84/108 (77.78%), Query Frame = 0


Query: 1   MVVARFDIDKFDGKGDFDLWKAKIKAILGQQKALHALTDPSKLPATVTEGDLETMNMTAY 60
           M   R++I+KFDGK DF+L KAKIKA+LGQQK L A+TDP+K P T++E D ET+ + AY
Sbjct: 1   MATIRYEIEKFDGKIDFELQKAKIKAVLGQQKTLLAITDPTKYPETLSEADKETIELNAY 60

Query: 61  GTIILNLSNSVLRQVIDEETPQKIWKKLNELYEVKDAHNKMYMREKFF 109
           GTIILN+++S+LRQ++D+ T   +W KLNE+Y  KD  NK + RE+FF
Sbjct: 61  GTIILNVTDSILRQIVDQPTAYALWNKLNEIYLNKDLPNKAFFRERFF 108

[Close]

BLAST of Lag0036842 vs. NCBI nr
Match: XP_038890043.1 (uncharacterized protein LOC120079747 [Benincasa hispida])

HSP 1 Score: 131.7 bits (330), Expect = 4.0e-27
Identity = 60/108 (55.56%), Postives = 83/108 (76.85%), Query Frame = 0


Query: 1   MVVARFDIDKFDGKGDFDLWKAKIKAILGQQKALHALTDPSKLPATVTEGDLETMNMTAY 60
           M   R++I+KFD K DF+LWK KIK +LGQQKAL A+TDP+K P T+TE + ET+ + A 
Sbjct: 1   MATTRYEIEKFDSKTDFELWKVKIKVVLGQQKALLAITDPAKYPETLTEAEKETIEVNAC 60

Query: 61  GTIILNLSNSVLRQVIDEETPQKIWKKLNELYEVKDAHNKMYMREKFF 109
           GTI+LN++++VLRQVI++ T   +W KLNE+Y  KD  NK ++RE+FF
Sbjct: 61  GTIVLNVTDNVLRQVINQPTAYALWNKLNEIYLNKDLSNKAFLRERFF 108

[Close]

BLAST of Lag0036842 vs. NCBI nr
Match: XP_038889933.1 (uncharacterized protein LOC120079695 [Benincasa hispida])

HSP 1 Score: 129.8 bits (325), Expect = 1.5e-26
Identity = 60/108 (55.56%), Postives = 83/108 (76.85%), Query Frame = 0


Query: 1   MVVARFDIDKFDGKGDFDLWKAKIKAILGQQKALHALTDPSKLPATVTEGDLETMNMTAY 60
           M   RF+I+KFDGK DF+LWKAKIKA+LGQQKAL A+TD +K P T T+ + E + + AY
Sbjct: 1   MTTTRFEIEKFDGKTDFELWKAKIKAVLGQQKALLAITDLTKYPKTFTDVEKEIIEVNAY 60

Query: 61  GTIILNLSNSVLRQVIDEETPQKIWKKLNELYEVKDAHNKMYMREKFF 109
           GTI+LN++++VLRQ++D +T   +W KLNE+Y  KD  NK + R++FF
Sbjct: 61  GTIVLNVTDNVLRQIVDRQTAFDLWNKLNEIYLNKDLLNKAFSRKRFF 108

[Close]

BLAST of Lag0036842 vs. NCBI nr
Match: XP_038887098.1 (uncharacterized protein LOC120077280 [Benincasa hispida])

HSP 1 Score: 129.4 bits (324), Expect = 2.0e-26
Identity = 62/108 (57.41%), Postives = 84/108 (77.78%), Query Frame = 0


Query: 1   MVVARFDIDKFDGKGDFDLWKAKIKAILGQQKALHALTDPSKLPATVTEGDLETMNMTAY 60
           M   +++I+KFD K DF+L KAKIKA+LGQQKAL A+TDPSK P T++E + ET+   AY
Sbjct: 1   MATTKYEIEKFDEKIDFELRKAKIKAVLGQQKALLAITDPSKYPETLSEAEKETIESNAY 60

Query: 61  GTIILNLSNSVLRQVIDEETPQKIWKKLNELYEVKDAHNKMYMREKFF 109
           GTIILN+++SVLRQ++D+ T   +W KLNE+Y  KD  NK ++RE+FF
Sbjct: 61  GTIILNVTDSVLRQIMDQPTVYALWNKLNEIYLNKDFPNKNFLRERFF 108

[Close]

BLAST of Lag0036842 vs. NCBI nr
Match: XP_038889301.1 (uncharacterized protein LOC120079211 [Benincasa hispida])

HSP 1 Score: 126.3 bits (316), Expect = 1.7e-25
Identity = 59/108 (54.63%), Postives = 82/108 (75.93%), Query Frame = 0


Query: 1   MVVARFDIDKFDGKGDFDLWKAKIKAILGQQKALHALTDPSKLPATVTEGDLETMNMTAY 60
           M   R++I+KFDGK +FDLWKAKIK +LGQQKAL A+T+P+K P T+T+ + +T+ + AY
Sbjct: 1   MATTRYEIEKFDGKTNFDLWKAKIKTVLGQQKALLAITNPAKYPETLTDTEKKTIEVNAY 60

Query: 61  GTIILNLSNSVLRQVIDEETPQKIWKKLNELYEVKDAHNKMYMREKFF 109
           GTI+LN+ +SVLRQ++D+ T   ++ KLNE Y  KD  NK  +RE FF
Sbjct: 61  GTIVLNVIDSVLRQIVDQTTAYDLYNKLNETYLNKDLSNKALLREIFF 108

[Close]

BLAST of Lag0036842 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.1e-11
Identity = 35/111 (31.53%), Postives = 61/111 (54.95%), Query Frame = 0


Query: 5   RFDIDKFDGKGDFDLWKAKIKAILGQQKALHALTDPSKLPATVTEGDLETMNMTAYGTII 64
           ++++ KF+G   F  W+ +++ +L QQ     L   SK P T+   D   ++  A   I 
Sbjct: 5   KYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASAIR 64

Query: 65  LNLSNSVLRQVIDEETPQKIWKKLNELYEVKDAHNKMYMREKFFYLQDGSG 116
           L+LS+ V+  +IDE+T + IW +L  LY  K   NK+Y++++ + L    G
Sbjct: 65  LHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEG 115

The following BLAST results are available for this feature:

BLAST of Lag0036842 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880370.1	6.1e-28	57.41	uncharacterized protein LOC120072018 [Benincasa hispida]	[more]
XP_038890043.1	4.0e-27	55.56	uncharacterized protein LOC120079747 [Benincasa hispida]	[more]
XP_038889933.1	1.5e-26	55.56	uncharacterized protein LOC120079695 [Benincasa hispida]	[more]
XP_038887098.1	2.0e-26	57.41	uncharacterized protein LOC120077280 [Benincasa hispida]	[more]
XP_038889301.1	1.7e-25	54.63	uncharacterized protein LOC120079211 [Benincasa hispida]	[more]

BLAST of Lag0036842 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	7.1e-11	31.53	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 55..110 e-value: 3.5E-13 score: 49.5
None	No IPR available	PANTHER	PTHR34676:SF6	SUBFAMILY NOT NAMED	coord: 4..108
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 4..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0036842.1	Lag0036842.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044249	cellular biosynthetic process
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0034641	cellular nitrogen compound metabolic process
biological_process	GO:1901576	organic substance biosynthetic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0003676	nucleic acid binding