Lag0036796 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0036796
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr2: 1178455 .. 1178970 (-)
RNA-Seq ExpressionLag0036796
SyntenyLag0036796
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGAATCATCTGAGCGTGGAAGTCAAGGACTGAAAGAAGTGTTCATCGCAAGGAATAGTGAGGCCCATGTCGTGATCGAAGCCGAATTCGTCGGCGGCTTGCTGGAGGAGGATTTGGAACTGCGGGTGAGTGAGAAATGTGATGGGGACAATGTATCTGGTTCGATTTTGGCCGACGTAGACGACGAAATGGCCCTTGGGGACGTCCAAAGGGAGGCCCTGCTCGTCGTAGTGCCTACGGGCCAAGCTGGAGCAGCGCTTGAGCATCTGCTTCAGCACTGCCGGCTGTGGGATTTTGCTCGACTTTCTGATGGCCATGGAGTTATTGAGTTGAATCGAGTGGAGTGGAGTCGAGAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAGAAGAAAGTGGAAAGTGAAGAAGAAAGCGGTGAGAAAACAGAGGGGATTGTGAAGGGGTATTTATGGAAGGAGTTGGGAGAGTGTGGGGTAAATGACAGAGCACGGGTGTTTTGGGAGACCTGA

mRNA sequence

ATGAATGAATCATCTGAGCGTGGAAGTCAAGGACTGAAAGAAGTGTTCATCGCAAGGAATAGTGAGGCCCATGTCGTGATCGAAGCCGAATTCGTCGGCGGCTTGCTGGAGGAGGATTTGGAACTGCGGGTGAGTGAGAAATGTGATGGGGACAATGTATCTGGTTCGATTTTGGCCGACGTAGACGACGAAATGGCCCTTGGGGACGTCCAAAGGGAGGCCCTGCTCGTCGTAGTGCCTACGGGCCAAGCTGGAGCAGCGCTTGAGCATCTGCTTCAGCACTGCCGGCTGTGGGATTTTGCTCGACTTTCTGATGGCCATGGAGTTATTGAGTTGAATCGAGTGGAGTGGAGTCGAGAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAGAAGAAAGTGGAAAGTGAAGAAGAAAGCGGTGAGAAAACAGAGGGGATTGTGAAGGGGTATTTATGGAAGGAGTTGGGAGAGTGTGGGGTAAATGACAGAGCACGGGTGTTTTGGGAGACCTGA

Coding sequence (CDS)

ATGAATGAATCATCTGAGCGTGGAAGTCAAGGACTGAAAGAAGTGTTCATCGCAAGGAATAGTGAGGCCCATGTCGTGATCGAAGCCGAATTCGTCGGCGGCTTGCTGGAGGAGGATTTGGAACTGCGGGTGAGTGAGAAATGTGATGGGGACAATGTATCTGGTTCGATTTTGGCCGACGTAGACGACGAAATGGCCCTTGGGGACGTCCAAAGGGAGGCCCTGCTCGTCGTAGTGCCTACGGGCCAAGCTGGAGCAGCGCTTGAGCATCTGCTTCAGCACTGCCGGCTGTGGGATTTTGCTCGACTTTCTGATGGCCATGGAGTTATTGAGTTGAATCGAGTGGAGTGGAGTCGAGAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAGAAGAAAGTGGAAAGTGAAGAAGAAAGCGGTGAGAAAACAGAGGGGATTGTGAAGGGGTATTTATGGAAGGAGTTGGGAGAGTGTGGGGTAAATGACAGAGCACGGGTGTTTTGGGAGACCTGA

Protein sequence

MNESSERGSQGLKEVFIARNSEAHVVIEAEFVGGLLEEDLELRVSEKCDGDNVSGSILADVDDEMALGDVQREALLVVVPTGQAGAALEHLLQHCRLWDFARLSDGHGVIELNRVEWSREKKKKKKKKKKKKKVESEEESGEKTEGIVKGYLWKELGECGVNDRARVFWET
Homology
BLAST of Lag0036796 vs. NCBI nr
Match: CAG1843392.1 (unnamed protein product, partial [Musa acuminata subsp. malaccensis])

HSP 1 Score: 79.0 bits (193), Expect = 4.5e-11
Identity = 47/104 (45.19%), Postives = 63/104 (60.58%), Query Frame = 0

Query: 4   SSERGSQGLKEVFIARNSEAHVVIEAEFVGGLLEEDLELRVSEKCDGDNVSGSILADVDD 63
           S ER  +G ++  +A + EAHVV+EAE + GL EE LEL V +  DG + +  + ADVDD
Sbjct: 1   SFERRGEGAEDGLVAGDGEAHVVVEAELLLGLAEEALELGVVQVGDGHDEAAPVRADVDD 60

Query: 64  EMALGDVQREALLVVVPTGQAGAALEHLLQHCRLWDFARLSDGH 108
           E+ALG+V R       P  +A A L+HLLQ+  L   A L D H
Sbjct: 61  EVALGNVHRRPF----PPPRARAPLQHLLQYLSLNQLALLLDHH 100

BLAST of Lag0036796 vs. NCBI nr
Match: CAG1863181.1 (unnamed protein product, partial [Musa acuminata subsp. malaccensis])

HSP 1 Score: 72.8 bits (177), Expect = 3.3e-09
Identity = 45/115 (39.13%), Postives = 63/115 (54.78%), Query Frame = 0

Query: 4   SSERGSQGLKEVFIARNSEAHVVIEAEFVGGLLEEDLELRVSEKCDGDNVSGSILADVDD 63
           S E G +G ++  +A + E HVV+EAE + GL EE LEL   +  DG + +  +L  V  
Sbjct: 51  SPEHGGEGTEDDLLAGDGEPHVVVEAELLLGLAEEALELGPLQVGDGHDEAAPLLPHVHR 110

Query: 64  EMALGDVQREALLVVVPTGQAGAALEHLLQHCRLWDFARLSDGH-GVIELNRVEW 118
           E+ALG V R+ L+  +   QA A L+HLL   RL     L DGH  V+    + W
Sbjct: 111 EVALGHVPRQLLVQALLPPQARAPLQHLLDGRRLRKLVALPDGHLSVLTAGILRW 165

BLAST of Lag0036796 vs. NCBI nr
Match: KAG6413467.1 (hypothetical protein SASPL_126180 [Salvia splendens])

HSP 1 Score: 61.6 bits (148), Expect = 7.5e-06
Identity = 40/78 (51.28%), Postives = 50/78 (64.10%), Query Frame = 0

Query: 21  SEAHVVIEAEFVGGLLEEDLELRVSEKCDGDNVSGSILADVDDEMALGDVQRE-ALLVVV 80
           +EAH+V E +F+ G  EE LEL V +K DG++VS  ILA VD E+ LG V  E AL+V  
Sbjct: 138 NEAHLVPEPKFLLGSSEEALELGVGQKRDGNDVSRPILAHVDCEVPLGHVHGEPALVVYD 197

Query: 81  PTGQAGAALEHLLQHCRL 98
           P  Q    L+ LLQH RL
Sbjct: 198 PFTQTRTLLQDLLQHRRL 215

BLAST of Lag0036796 vs. NCBI nr
Match: CAG1843043.1 (unnamed protein product [Musa acuminata subsp. malaccensis])

HSP 1 Score: 61.6 bits (148), Expect = 7.5e-06
Identity = 41/89 (46.07%), Postives = 56/89 (62.92%), Query Frame = 0

Query: 4   SSERGSQGLKEVFIARNSEAHVVIEAEFVGGLLEEDLELRVSEKCDGDNVSGSILADVDD 63
           SSE G +G ++  +AR+ EAHVV+EAE + GL ++ LELRV E   G +     LA V  
Sbjct: 48  SSEHGGEGAEDDLLARDGEAHVVVEAELLLGLPQQALELRVGEVRYGHDEPAPALAHVHR 107

Query: 64  EMALGDVQREALLVVVPTGQAGAALEHLL 93
           E+ALG V R   L++ P  QA A L++LL
Sbjct: 108 EVALGHVHR---LLLPP--QARAPLQYLL 131

BLAST of Lag0036796 vs. NCBI nr
Match: RRT62836.1 (hypothetical protein B296_00021467 [Ensete ventricosum])

HSP 1 Score: 58.9 bits (141), Expect = 4.9e-05
Identity = 40/89 (44.94%), Postives = 55/89 (61.80%), Query Frame = 0

Query: 4  SSERGSQGLKEVFIARNSEAHVVIEAEFVGGLLEEDLELRVSEKCDGDNVSGSILADVDD 63
          SSE G +G ++  +AR+ EAHVV+EAE + GL ++ LEL V E  DG +     LA V  
Sbjct: 11 SSEHGREGAEDDLLARDGEAHVVVEAELLLGLPQQALELGVGEVRDGHDEPAPALAHVHR 70

Query: 64 EMALGDVQREALLVVVPTGQAGAALEHLL 93
          E+ALG V     L++ P  QA A L++LL
Sbjct: 71 EVALGHVH---WLLLPP--QARAPLQYLL 94

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CAG1843392.14.5e-1145.19unnamed protein product, partial [Musa acuminata subsp. malaccensis][more]
CAG1863181.13.3e-0939.13unnamed protein product, partial [Musa acuminata subsp. malaccensis][more]
KAG6413467.17.5e-0651.28hypothetical protein SASPL_126180 [Salvia splendens][more]
CAG1843043.17.5e-0646.07unnamed protein product [Musa acuminata subsp. malaccensis][more]
RRT62836.14.9e-0544.94hypothetical protein B296_00021467 [Ensete ventricosum][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 119..139
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 123..144

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0036796.1Lag0036796.1mRNA