Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTCGAGGAGGTGCAGCCGGTCCCAAGGGGAAGAAGAAGGGAGTAACCTTCACAATCGACTGTTCGAAGCCGGTGGAAGATAAGATTATGGACATTGCTTCGCTGGAGAAGTTTCTTCTGGAGAGGATTAAGGTCGGAGGCAAGGCTGGAGCTCTTGGCGATGCTGTCTCTGTTACTCGTGAGAAGAGTAAAATTACCGTCACTTCTGACAGTAATTTCTCCAAGAGGTATAACTTCTTTTTTTCCCATTTGAATCATTGGTTTAAGCTGGAATTTTTTCGTATTTTAATTGTAGTTTTGACGTGAAGTTTATGTTATGTTTATCGACGAAATATGAAAAGGAGTCGCTAGGTTAAAGATTTGTTACTTGTTAGCTTGTTTAAGAGATAAATCAAAAGGAGGATGCATTTAGATTTTGCCCTGGAGATAGTTTAGGTATGTCAAAGTAAAGGGAAGGATAGGTTTGTAATGTTTTATAATGGTTCTGTATAATGAGAATGATTGAAGGCAGTGAATTCCATTTGTAGAACTCTAGGGTAGGCATGAGGGCTATTTCGATTTACCAGTGCATCATTTTGGAGGGCTCTGGTTATAAAAGTTCTGGGTGGTTTTCAATTTCTATTTTTGAAGTTTGGGATGAAATAGGTTGTTCATATTGGAACATTGGTGGTTGGTAGTTCTGTTCTGCTCGCGTGTTGAAAACACATTGCTTGTAGTTTCATTATTTAACTTGTAACCTGAACCCAGTGAGCTTGTTATGTTTATGTAATATGCTCATTGCATAGGTTTGTTTGTGAATATGACACACATAAATACAATACTGTGCTAGGGATTTGTTCTTTAGAATCTATTATTTAGCTTAGGATGTTCATTTTTGTCATAGTATTTATGTGGTGGGTACATAGTTCTAATGATTTGTGGTTTGCGATTGATTTAGCTTATTTCCCTCCCTTCCCTGAATGGAGTGATGTGGCCTAAATAAGCTAATTTTATTATAGTATTCTATTTACATGGTTCTTGGAGTTTATATTCAAGTCTAGGTTTCTGATTTTAATGATATCTTCATTCCAACACGGAAAGATATAGGAACTCCTTATAAGGATATAAGGATATAGCAATTCACAAATCAGACAACCTATTTACTCATTGGTGATGTTTGCGGATCGCAGGCAGCTGTAGAAATGTAATATCTGAATTTCATTAGCTTTTCCATCTGTTCTCCTGGCATCAGCCGTTGGGCCTTGGAGAATCATGCTGAAGTCCTAATAATAACTTTTAATTTAGCTAAGGCAAAATAATTATGACTGATTTTATCTCGTGTTTGTTGGGTTAGGTATTTGAAGTACTTGACGAAGAAGTACCTGAAGAAACACAACGTGAGAGATTGGCTACGAGTGATTGCTGCCAACAAAGATAGGAATGTTTACGAACTCAGGTACTTCAACATAGCCGAGAATGAGGGAGAGGAAGAGGATTAA
mRNA sequence
ATGAGTCGAGGAGGTGCAGCCGGTCCCAAGGGGAAGAAGAAGGGAGTAACCTTCACAATCGACTGTTCGAAGCCGGTGGAAGATAAGATTATGGACATTGCTTCGCTGGAGAAGTTTCTTCTGGAGAGGATTAAGGTCGGAGGCAAGGCTGGAGCTCTTGGCGATGCTGTCTCTGTTACTCGTGAGAAGAGTAAAATTACCGTCACTTCTGACAGTAATTTCTCCAAGAGGTATTTGAAGTACTTGACGAAGAAGTACCTGAAGAAACACAACGTGAGAGATTGGCTACGAGTGATTGCTGCCAACAAAGATAGGAATGTTTACGAACTCAGGTACTTCAACATAGCCGAGAATGAGGGAGAGGAAGAGGATTAA
Coding sequence (CDS)
ATGAGTCGAGGAGGTGCAGCCGGTCCCAAGGGGAAGAAGAAGGGAGTAACCTTCACAATCGACTGTTCGAAGCCGGTGGAAGATAAGATTATGGACATTGCTTCGCTGGAGAAGTTTCTTCTGGAGAGGATTAAGGTCGGAGGCAAGGCTGGAGCTCTTGGCGATGCTGTCTCTGTTACTCGTGAGAAGAGTAAAATTACCGTCACTTCTGACAGTAATTTCTCCAAGAGGTATTTGAAGTACTTGACGAAGAAGTACCTGAAGAAACACAACGTGAGAGATTGGCTACGAGTGATTGCTGCCAACAAAGATAGGAATGTTTACGAACTCAGGTACTTCAACATAGCCGAGAATGAGGGAGAGGAAGAGGATTAA
Protein sequence
MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVTREKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEGEEED
Homology
BLAST of Lag0036268 vs. NCBI nr
Match:
XP_022146066.1 (60S ribosomal protein L22-2 [Momordica charantia] >XP_022933854.1 60S ribosomal protein L22-2 [Cucurbita moschata] >XP_022970154.1 60S ribosomal protein L22-2 [Cucurbita maxima] >XP_023530293.1 60S ribosomal protein L22-2 [Cucurbita pepo subsp. pepo] >XP_038880642.1 60S ribosomal protein L22-2 [Benincasa hispida])
HSP 1 Score: 241.5 bits (615), Expect = 3.8e-60
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0
Query: 1 MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVT 60
MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVT
Sbjct: 1 MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVT 60
Query: 61 REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG 120
REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG
Sbjct: 61 REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG 120
Query: 121 EEED 125
EEED
Sbjct: 121 EEED 124
BLAST of Lag0036268 vs. NCBI nr
Match:
KAG6588488.1 (60S ribosomal protein L22-2, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 241.5 bits (615), Expect = 3.8e-60
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0
Query: 1 MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVT 60
MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVT
Sbjct: 55 MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVT 114
Query: 61 REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG 120
REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG
Sbjct: 115 REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG 174
Query: 121 EEED 125
EEED
Sbjct: 175 EEED 178
BLAST of Lag0036268 vs. NCBI nr
Match:
KAG6590443.1 (60S ribosomal protein L22-2, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 240.4 bits (612), Expect = 8.6e-60
Identity = 123/124 (99.19%), Postives = 124/124 (100.00%), Query Frame = 0
Query: 1 MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVT 60
MSRGGAAGPKGKKKGVTFTIDC+KPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVT
Sbjct: 37 MSRGGAAGPKGKKKGVTFTIDCTKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVT 96
Query: 61 REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG 120
REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG
Sbjct: 97 REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG 156
Query: 121 EEED 125
EEED
Sbjct: 157 EEED 160
BLAST of Lag0036268 vs. NCBI nr
Match:
XP_004135607.1 (60S ribosomal protein L22-2 [Cucumis sativus] >XP_008450627.1 PREDICTED: 60S ribosomal protein L22-2 [Cucumis melo] >KAA0050904.1 60S ribosomal protein L22-2 [Cucumis melo var. makuwa] >KAE8653365.1 hypothetical protein Csa_007558 [Cucumis sativus] >TYK10255.1 60S ribosomal protein L22-2 [Cucumis melo var. makuwa])
HSP 1 Score: 240.4 bits (612), Expect = 8.6e-60
Identity = 123/124 (99.19%), Postives = 124/124 (100.00%), Query Frame = 0
Query: 1 MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVT 60
MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGD+VSVT
Sbjct: 1 MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVSVT 60
Query: 61 REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG 120
REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG
Sbjct: 61 REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG 120
Query: 121 EEED 125
EEED
Sbjct: 121 EEED 124
BLAST of Lag0036268 vs. NCBI nr
Match:
XP_022961443.1 (60S ribosomal protein L22-2-like [Cucurbita moschata] >XP_022968816.1 60S ribosomal protein L22-2-like [Cucurbita maxima] >XP_023515962.1 60S ribosomal protein L22-2-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 240.4 bits (612), Expect = 8.6e-60
Identity = 123/124 (99.19%), Postives = 124/124 (100.00%), Query Frame = 0
Query: 1 MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVT 60
MSRGGAAGPKGKKKGVTFTIDC+KPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVT
Sbjct: 1 MSRGGAAGPKGKKKGVTFTIDCTKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVT 60
Query: 61 REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG 120
REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG
Sbjct: 61 REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG 120
Query: 121 EEED 125
EEED
Sbjct: 121 EEED 124
BLAST of Lag0036268 vs. ExPASy Swiss-Prot
Match:
Q9M9W1 (60S ribosomal protein L22-2 OS=Arabidopsis thaliana OX=3702 GN=RPL22B PE=2 SV=1)
HSP 1 Score: 219.5 bits (558), Expect = 2.0e-56
Identity = 111/124 (89.52%), Postives = 119/124 (95.97%), Query Frame = 0
Query: 1 MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVT 60
MSRGGAA KGKKKGV+FTIDCSKPV+DKIM+IASLEKFL ERIKVGGKAGALGD+V++T
Sbjct: 1 MSRGGAAVAKGKKKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTIT 60
Query: 61 REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG 120
REKSKITVT+D FSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRN+YELRYFNIAENEG
Sbjct: 61 REKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAENEG 120
Query: 121 EEED 125
EEED
Sbjct: 121 EEED 124
BLAST of Lag0036268 vs. ExPASy Swiss-Prot
Match:
Q9FE58 (60S ribosomal protein L22-3 OS=Arabidopsis thaliana OX=3702 GN=RPL22C PE=2 SV=1)
HSP 1 Score: 217.2 bits (552), Expect = 1.0e-55
Identity = 110/124 (88.71%), Postives = 117/124 (94.35%), Query Frame = 0
Query: 1 MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVT 60
MSRG AA KGKKKGV+FTIDCSKPV+DKIM+IASLEKFL ERIKVGGKAGALGD+VS+T
Sbjct: 1 MSRGNAAAAKGKKKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVSIT 60
Query: 61 REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG 120
REKSKITVT+D FSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRN+YELRYFNIAENE
Sbjct: 61 REKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAENEA 120
Query: 121 EEED 125
EEED
Sbjct: 121 EEED 124
BLAST of Lag0036268 vs. ExPASy Swiss-Prot
Match:
Q9SRX7 (Putative 60S ribosomal protein L22-1 OS=Arabidopsis thaliana OX=3702 GN=RPL22A PE=3 SV=1)
HSP 1 Score: 163.7 bits (413), Expect = 1.3e-39
Identity = 85/126 (67.46%), Postives = 104/126 (82.54%), Query Frame = 0
Query: 1 MSRGGA--AGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVS 60
M+R GA +G KKKGV+F IDCSKPV+D I++IA+LEKFL ERIKV GKAGALG++VS
Sbjct: 1 MARVGAKSSGAGAKKKGVSFVIDCSKPVDDTILEIATLEKFLQERIKVRGKAGALGNSVS 60
Query: 61 VTREKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAEN 120
+TR KI V ++SNFSKRYLKYLTKKYLKK+N+RDWLRVIA+NKD+NVYE+RYF I +
Sbjct: 61 ITRYNGKINVNANSNFSKRYLKYLTKKYLKKYNLRDWLRVIASNKDKNVYEVRYFRIDDE 120
Query: 121 EGEEED 125
E+
Sbjct: 121 VASYEE 126
BLAST of Lag0036268 vs. ExPASy Swiss-Prot
Match:
Q90YU6 (60S ribosomal protein L22 OS=Ictalurus punctatus OX=7998 GN=rpl22 PE=2 SV=3)
HSP 1 Score: 142.5 bits (358), Expect = 3.2e-33
Identity = 79/125 (63.20%), Postives = 94/125 (75.20%), Query Frame = 0
Query: 1 MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGAL-GDAVSV 60
+ + G K KK+ + FT+DC+ PVED IMD A+ E+FL ERIKV GKAG L G VS+
Sbjct: 4 LKKPAVKGGKKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVSI 63
Query: 61 TREKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENE 120
R KSKITVTSD FSKRYLKYLTKKYLKK+N+RDWLRV+A K+ YELRYF I ++E
Sbjct: 64 ERSKSKITVTSDIPFSKRYLKYLTKKYLKKNNLRDWLRVVANTKES--YELRYFQINQDE 123
Query: 121 GEEED 125
EEED
Sbjct: 124 EEEED 126
BLAST of Lag0036268 vs. ExPASy Swiss-Prot
Match:
P47198 (60S ribosomal protein L22 OS=Rattus norvegicus OX=10116 GN=Rpl22 PE=2 SV=2)
HSP 1 Score: 142.1 bits (357), Expect = 4.2e-33
Identity = 78/120 (65.00%), Postives = 94/120 (78.33%), Query Frame = 0
Query: 6 AAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGAL-GDAVSVTREKS 65
A G K KK+ + FT+DC+ PVED IMD A+ E+FL ERIKV GKAG L G V++ R KS
Sbjct: 9 AKGGKKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKS 68
Query: 66 KITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEGEEED 125
KITVTS+ FSKRYLKYLTKKYLKK+N+RDWLRV+A +K+ YELRYF I ++E EEED
Sbjct: 69 KITVTSEEPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 126
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022146066.1 | 3.8e-60 | 100.00 | 60S ribosomal protein L22-2 [Momordica charantia] >XP_022933854.1 60S ribosomal ... | [more] |
KAG6588488.1 | 3.8e-60 | 100.00 | 60S ribosomal protein L22-2, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
KAG6590443.1 | 8.6e-60 | 99.19 | 60S ribosomal protein L22-2, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
XP_004135607.1 | 8.6e-60 | 99.19 | 60S ribosomal protein L22-2 [Cucumis sativus] >XP_008450627.1 PREDICTED: 60S rib... | [more] |
XP_022961443.1 | 8.6e-60 | 99.19 | 60S ribosomal protein L22-2-like [Cucurbita moschata] >XP_022968816.1 60S riboso... | [more] |
Match Name | E-value | Identity | Description | |
Q9M9W1 | 2.0e-56 | 89.52 | 60S ribosomal protein L22-2 OS=Arabidopsis thaliana OX=3702 GN=RPL22B PE=2 SV=1 | [more] |
Q9FE58 | 1.0e-55 | 88.71 | 60S ribosomal protein L22-3 OS=Arabidopsis thaliana OX=3702 GN=RPL22C PE=2 SV=1 | [more] |
Q9SRX7 | 1.3e-39 | 67.46 | Putative 60S ribosomal protein L22-1 OS=Arabidopsis thaliana OX=3702 GN=RPL22A P... | [more] |
Q90YU6 | 3.2e-33 | 63.20 | 60S ribosomal protein L22 OS=Ictalurus punctatus OX=7998 GN=rpl22 PE=2 SV=3 | [more] |
P47198 | 4.2e-33 | 65.00 | 60S ribosomal protein L22 OS=Rattus norvegicus OX=10116 GN=Rpl22 PE=2 SV=2 | [more] |