Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTAAGTTTGTGGGGAGAGTGTTGGAATTGTCGAAGTTTGACGGCCTTTTGCAGGTTCCTATGTCTGTGAGTATCTTGTTCTTCCTGATGGATATGAAGGAGAGAATGGATGGGGAATCTTTTGAGGAGTTTTCTATGATTCTGTGGGCTGTTTGGGGTTGCCAGAATAGGTGTAGAAGTTTGGGTGTTGCAACGACGATTGGTTTGTCAGATTGGGCAGTGGCGTATGTGGCCGTTTTTCGGGATGCAAGATGGGCAGGGGCTGGAAGTTTTGAGAGGCGGCTGAATCGGTCTGAGGTTAGGTGGGTTCAGTCGGCGTGGAATCAGTATAAGGTGAATGTGGATGCTTCCTCCTCACCGGAGTCGTCGTTGGCTAGTGTGGGGGTTGTCGTACGAGATTTGAAGAGGTTTGTTTTGCTCTATGCGATTAAATTTGTGGGCAGAATTCGGTGCTCTGATTTGGCAGAGGGACTGGCTGTTGCTGAGGGGATGAAGCTGGCGATGGAAATGGGTTTTAAGCTTGTGGTTGTTGAGACAGATTCGAGTAGAATTTTCCAGCTAGTGTAG mRNA sequence
ATGTCTAAGTTTGTGGGGAGAGTGTTGGAATTGTCGAAGTTTGACGGCCTTTTGCAGGTTCCTATGTCTGTGAGTATCTTGTTCTTCCTGATGGATATGAAGGAGAGAATGGATGGGGAATCTTTTGAGGAGTTTTCTATGATTCTGTGGGCTGTTTGGGGTTGCCAGAATAGGTGTAGAAGTTTGGGTGTTGCAACGACGATTGGTTTGTCAGATTGGGCAGTGGCGTATGTGGCCGTTTTTCGGGATGCAAGATGGGCAGGGGCTGGAAGTTTTGAGAGGCGGCTGAATCGGTCTGAGGTTAGGTGGGTTCAGTCGGCGTGGAATCAGTATAAGGTGAATGTGGATGCTTCCTCCTCACCGGAGTCGTCGTTGGCTAGTGTGGGGGTTGTCGTACGAGATTTGAAGAGGTTTGTTTTGCTCTATGCGATTAAATTTGTGGGCAGAATTCGGTGCTCTGATTTGGCAGAGGGACTGGCTGTTGCTGAGGGGATGAAGCTGGCGATGGAAATGGGTTTTAAGCTTGTGGTTGTTGAGACAGATTCGAGTAGAATTTTCCAGCTAGTGTAG Coding sequence (CDS)
ATGTCTAAGTTTGTGGGGAGAGTGTTGGAATTGTCGAAGTTTGACGGCCTTTTGCAGGTTCCTATGTCTGTGAGTATCTTGTTCTTCCTGATGGATATGAAGGAGAGAATGGATGGGGAATCTTTTGAGGAGTTTTCTATGATTCTGTGGGCTGTTTGGGGTTGCCAGAATAGGTGTAGAAGTTTGGGTGTTGCAACGACGATTGGTTTGTCAGATTGGGCAGTGGCGTATGTGGCCGTTTTTCGGGATGCAAGATGGGCAGGGGCTGGAAGTTTTGAGAGGCGGCTGAATCGGTCTGAGGTTAGGTGGGTTCAGTCGGCGTGGAATCAGTATAAGGTGAATGTGGATGCTTCCTCCTCACCGGAGTCGTCGTTGGCTAGTGTGGGGGTTGTCGTACGAGATTTGAAGAGGTTTGTTTTGCTCTATGCGATTAAATTTGTGGGCAGAATTCGGTGCTCTGATTTGGCAGAGGGACTGGCTGTTGCTGAGGGGATGAAGCTGGCGATGGAAATGGGTTTTAAGCTTGTGGTTGTTGAGACAGATTCGAGTAGAATTTTCCAGCTAGTGTAG Protein sequence
MSKFVGRVLELSKFDGLLQVPMSVSILFFLMDMKERMDGESFEEFSMILWAVWGCQNRCRSLGVATTIGLSDWAVAYVAVFRDARWAGAGSFERRLNRSEVRWVQSAWNQYKVNVDASSSPESSLASVGVVVRDLKRFVLLYAIKFVGRIRCSDLAEGLAVAEGMKLAMEMGFKLVVVETDSSRIFQLV
Homology
BLAST of Lag0036244 vs. NCBI nr
Match:
XP_022150944.1 (uncharacterized protein LOC111018973 [Momordica charantia])
HSP 1 Score: 84.7 bits (208), Expect = 9.2e-13
Identity = 61/183 (33.33%), Postives = 91/183 (49.73%), Query Frame = 0
Query: 10 ELSKFDGLLQVPMSVSILFFLMDMKERMDGESFEEFSMILWAVWGCQNRCR---SLGVAT 69 + S F LL VP+ + F+ + + + ++LWA+W +N+ SLG + Sbjct: 9 KFSHFLHLLWVPVGSDMGHFMRVWTDLVSWQHIGAIVVLLWAIWNARNQTPQHFSLG-GS 68 Query: 70 TIGLSDWAVAYVAVFRDARWAGAGSFERRLNRSEVRWVQSAWNQYKVNVDASSSPESSLA 129 L W+ Y+ V++ A+ + + W A KVNVDA+ ES +A Sbjct: 69 LSDLVSWSENYLQVYQAAQRSSXSALVVCRPPRVAIWRPPAAPLLKVNVDAAFRKESFVA 128 Query: 130 SVGVVVRDLKRFVLLYAIKFVGRIRCSDLAEGLAVAEGMKLAMEMGFKLVVVETDSSRIF 189 VGV++RD V L AI+ + R D EG AV EG+ LA+E GF +ETDS RIF Sbjct: 129 GVGVIIRDSTGLVYLTAIRLLARASDVDWVEGFAVYEGILLAVEAGFIRFQIETDSLRIF 188
BLAST of Lag0036244 vs. NCBI nr
Match:
XP_022140628.1 (uncharacterized protein LOC111011237 [Momordica charantia])
HSP 1 Score: 77.4 bits (189), Expect = 1.5e-10
Identity = 45/120 (37.50%), Postives = 70/120 (58.33%), Query Frame = 0
Query: 70 LSDWAVAYVAVFRDARWAGAGSFERRL-NRSEVRWVQSAWNQYKVNVDASSSPESSLASV 129 L +WA YV FR+ A + F R+ N +EV W+ YK+N DAS A + Sbjct: 3 LVEWANKYVMEFRE---ANSNPFPGRVTNTAEVLWLPPDKRIYKINTDASFLASDQHAGL 62 Query: 130 GVVVRDLKRFVLLYAIKFVGRIRCSDLAEGLAVAEGMKLAMEMGFKLVVVETDSSRIFQL 189 G+++R+ + V+ A K++ I+ D+AE + EG++LA ++G V++ETDSSRIF L Sbjct: 63 GIIIRNDRGQVMASATKYLENIQSVDMAEAIVAVEGLQLASKIGVNPVILETDSSRIFNL 119
BLAST of Lag0036244 vs. NCBI nr
Match:
XP_022139684.1 (uncharacterized protein LOC111010533 [Momordica charantia])
HSP 1 Score: 70.9 bits (172), Expect = 1.4e-08
Identity = 49/172 (28.49%), Postives = 83/172 (48.26%), Query Frame = 0
Query: 30 LMDMKERMDGESFEEFSMILWAVWGCQNR-CRSLGVATTIGLSDWAVAYVAVFR------ 89 L D ++ ++ + FEE + LW++W +N + L+ W Y+A F+ Sbjct: 5 LRDWRDMLNWKDFEELVVFLWSLWNRRNAFVFNKRRVEDDDLAGWVSTYIATFKATNTNH 64 Query: 90 -----DARWAGAGSFERRLNRSEVRWVQSAWNQYKVNVDASSSPESSLASVGV-VVRDLK 149 D + S + ++ W + +K+ DAS S A +GV ++RD + Sbjct: 65 ATANQDVSQSFQQSSQIHQAQNHTIWCPAEEGVFKLKTDASFSSIDFNAGLGVIIIRDHR 124 Query: 150 RFVLLYAIKFVGRIRCSDLAEGLAVAEGMKLAMEMGFKLVVVETDSSRIFQL 189 VL A K++ + D AE LA EG+++AME G +++ETDS RI+ L Sbjct: 125 GQVLASATKYLEHVASVDDAEALAAVEGLRVAMETGISPILLETDSLRIYNL 176
BLAST of Lag0036244 vs. NCBI nr
Match:
XP_022150918.1 (uncharacterized protein LOC111018954 [Momordica charantia])
HSP 1 Score: 70.1 bits (170), Expect = 2.3e-08
Identity = 44/155 (28.39%), Postives = 75/155 (48.39%), Query Frame = 0
Query: 24 VSILFFLMDMKERMDGESFEEFSMILWAVWGCQNRCRSLGVATT------IGLSDWAVAY 83 +S L + E + FEE +++W +W Q R+ +T + L +WA Y Sbjct: 909 LSPFLILRESHESLSKADFEELCVVIWGLWN-QRNARAFNDSTKTVFKIGMELVEWANKY 968 Query: 84 VAVFRDARWAGAGSFERRLNRSEVRWVQSAWNQYKVNVDASSSPESSLASVGVVVRDLKR 143 FR+A+ R N +E+ W YK+N DAS A +G+++ + + Sbjct: 969 AMEFREAK--SNPITGRVTNTAEILWQPPDEGIYKINTDASFLASDQHAGLGIIIHNDRG 1028 Query: 144 FVLLYAIKFVGRIRCSDLAEGLAVAEGMKLAMEMG 173 V+ A K++ I+ D+AE +A EG++LA E+G Sbjct: 1029 QVMAAATKYLENIQSVDMAEAIAAVEGLQLASEIG 1060
BLAST of Lag0036244 vs. NCBI nr
Match:
XP_022135942.1 (uncharacterized protein LOC111007775 [Momordica charantia])
HSP 1 Score: 70.1 bits (170), Expect = 2.3e-08
Identity = 49/159 (30.82%), Postives = 79/159 (49.69%), Query Frame = 0
Query: 35 ERMDGESFEEFSMILWAVWGCQNRCRSLG--VATTIGLSDWAVAYVAVFRDARWAGAGS- 94 +R+ EE S+ LWA+W +N+ + + DW Y+ V++ A+ + Sbjct: 2 DRIKWTGLEELSVFLWAIWNARNQSMFTNGHGFLLVNMVDWVADYLQVYQSAQEGPSLPL 61 Query: 95 -FERRLNRSEVRWVQSAWNQYKVNVDASSSPESSLASVGVVVRDLKRFVLLYAIKFVGRI 154 + R R W +KVNVDA+ + A + +++RD VLL A+ F+ + Sbjct: 62 LLDGRGGRVSA-WCPPLAPFFKVNVDAAFKKGNFSAGLDILIRDSTVNVLLSAMCFITHV 121 Query: 155 RCSDLAEGLAVAEGMKLAMEMGFKLVVVETDSSRIFQLV 190 LAE LA EG+ LA+E G +ETDSS++F L+ Sbjct: 122 SDVTLAECLAAQEGVCLAIEAGLIPFQIETDSSQVFNLL 159
The following BLAST results are available for this feature:
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
A T G T C T A A G T T T G T G G G G A G A G T G T T G G A A T T G T C G A A G T T T G A C G G C C T T T T G C A G G T T C C T A T G T C T G T G A G T A T C T T G T T C T T C C T G A T G G A T A T G A A G G A G A G A A T G G A T G G G G A A T C T T T T G A G G A G T T T T C T A T G A T T C T G T G G G C T G T T T G G G G T T G C C A G A A T A G G T G T A G A A G T T T G G G T G T T G C A A C G A C G A T T G G T T T G T C A G A T T G G G C A G T G G C G T A T G T G G C C G T T T T T C G G G A T G C A A G A T G G G C A G G G G C T G G A A G T T T T G A G A G G C G G C T G A A T C G G T C T G A G G T T A G G T G G G T T C A G T C G G C G T G G A A T C A G T A T A A G G T G A A T G T G G A T G C T T C C T C C T C A C C G G A G T C G T C G T T G G C T A G T G T G G G G G T T G T C G T A C G A G A T T T G A A G A G G T T T G T T T T G C T C T A T G C G A T T A A A T T T G T G G G C A G A A T T C G G T G C T C T G A T T T G G C A G A G G G A C T G G C T G T T G C T G A G G G G A T G A A G C T G G C G A T G G A A A T G G G T T T T A A G C T T G T G G T T G T T G A G A C A G A T T C G A G T A G A A T T T T C C A G C T A G T G T A G 50 100 150 200 250 300 350 400 450 500 550 Expect = 5.9E-11 / Score = 42.3 Expect = 1.9E-7 / Score = 33.1 Score = Sequence PF13456 G3DSA:3.30.420.10 SSF53098
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category
Term Accession
Term Name
molecular_function
GO:0003676
nucleic acid binding
molecular_function
GO:0004523
RNA-DNA hybrid ribonuclease activity