Lag0034688 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0034688
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr3: 9802435 .. 9804731 (-)
RNA-Seq ExpressionLag0034688
SyntenyLag0034688
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCGGCCTCGGCCTTGACATGAGGCTGAGCATTTCTTCTGTATTGTATTCATCCCAGGGGTGCGTACACTCTTTTGGGGAAAAAGCTTGGGGAGGTTGAGGGCATGTGTCAACCTCTCGGCAAGAATTTAGTCTCTTTCCAAGGGAAAGTACGGAAGTTTAGCCTCTGCAAGAGTCACCACATCCTATGGAAAAATGCTTTGCACAAACACGGTATAAAGAACTTTATTAAATTTGCAAGTGTCAACATTGTACCATGGAGAAAAGTTGTGGACATGTGTTATACAAAATGAAAACAAGTAATTGCCCCAATAGCTCCACTGATATTCATAACGTTATCCTAACTTGAATAAGTAAGAAAGGAAAATCAGAATTATCGCAACATGACCATGATTATGATGGACTCGGTTTGTCCTTACTCCCAACCCCCCACTCAAAATATGCGTTCAATACCTCGGACATGCATTTTTTGAGTAAGGAGAAACTAACTTCGTACCTGGGCCTCTAGGGGCAGAGCTCGACCTTGGCCTCTGGATGGTCGGCCTCGGACTTGGCATGAGGCCGACCAGCTCCTCTGTGTTGTTCGCTTGCTTGTTTTCCATTCCAAGGGTGCGTGCACCCAATCGGGGAAAACTTGGGGAGGTCGAGGAATTTCCCGAGCCCCCACTCAAAATATGCATTCCAGATTTAAAGAGTTGCATTTTTTTCAGTAAGAAAATATAATGTCATACCTGGTCTTTTGAGGACAAAGTTCATTCTTGAAGCTGAGGCAGCCGGCCCCGACCTTGGCACGAGGTCGAGCCTCGCTTCTCCATCACTTGTTTGTTTGCCTCATAGTTGGACTCATGTGCGGATACTTTGTCTGCGAAGTGACTACCGGACTCAGTCGAGCCCCATTCCTTGTCTAATGATCGGCCTCAGCCTTGGCATGAGGACGAGCATTTTTCCTGCATGGCTTGAGAAGTTTGAAGGAAGCTTGGGGAGGCTTTGGGATTTCCCCGGGCCTCTCTTCAAGCATCACGGTCGTCTCAGGGGTGCGTACACTCTTTTGGGGAAAAAGCTTGGGGAGGCCCAGGAATTTCCCAGGGCCTCTCTTCAAGCGTCATGGTCATCCCAGAGGTGCGTACACTCTTTTGGGGAAAAAGCTTGGGGAGGCCCAGGAATTTCCCAGGGCCTCTCTTCAAGCGTCATGGTCATCCCAGAGGTGCGTACACTCTTTTGGGGAAAAAGCTTGGGGAGGCCCAGGAATTTCCCAGGGCCTCTCTTCAAGCGTCATGGTCATCCCAGAGGTGCGTACACTCTTCTGGGGAAAAAGCTTGGGGAGGCCTAGGAATTTCCTGAGCCTGTCTTCAAGCATCATGGTCATTCCAGGGGTGCGTACACTCTTCTGGGGAAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTCATGGTCATCTCAGGGTGCGTACACTCTTCTGGGGAAAAAGCTTGGGGAGGTCTGGGAATTTCCCGAGCCTCTCTTCAAGCTGCATGGTCATCCTAGGGGTGCGTACACTCTTCTGGGGAAATGCTTGGGGAGGCATAGGAAATTTCCGAGCCTTTCTTCAAGCTGCATGGTCGTCCCAGGGGTGCGTACACTCTTCTGGGGAAAAAGCTTGGGGAGGCCTGGGAAGTTCCCGAGCCTCTCTTCAAGCATCGTCGTCATCCCAGGGGTGTGTACACTCTTCTGGGGAAAAAGCTTGGGGAGGTCTGGGAAGTTCTGGAGCCTCTCTTCAAGCATCGTCGTCATCCCAGGGGTGCATACACTCTTCTGGGGAAAAAGCTTGGGGAGGCCTGGGAAGTTCCCAAGCCTCTCTTCAAGCATCGTCGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAATGCTTCGGGAGGCCTGGGAATTTCCCGAGCCTCTCTCCAAGCGTTGTGTTATTCTCGAGGGTGCGTACACTCAGTCGGGGAACAAAGTATGCTCAAACTGCCTTTTATCATATTTCTTTGTGTTCGAGCTCTTGAAGGTGGTGTTTGGCCTTAGCCTTTAGGTGGTTGGCCTCGACCTTGGCATGAGGCCGACCAGCTCCTTTGTGTCATCTGCGTGCTCAGTCCATAACTCGACTTATGTGCAGAGCATCTCCCTTTCGGCTCGAACCGCTTCAGCTACGATAACAGGTCAAGTGTTGTGGTCTTCCCAGGGGTGCGTACACTTTTCTGGGGAAAAGCTTGGGGAGGCCTGGGAATTTCCCGAGTCTCTCTGCAAGCGCTGTCAAAACTTTTGA

mRNA sequence

ATGCTCGGCCTCGGCCTTGACATGAGGCTGAGCATTTCTTCTGTATTGTATTCATCCCAGGGGGGCAGAGCTCGACCTTGGCCTCTGGATGGTCGGCCTCGGACTTGGCATGAGGCCGACCAGCTCCTCTGTGTTGTTCGCTTGCTTGTTTTCCATTCCAAGGTAAGAAAATATAATGTCATACCTGGTCTTTTGAGGACAAAGTTCATTCTTGAAGCTGAGGCAGCCGGCCCCGACCTTGGCACGAGGTCGAGCCTCGCTTCTCCATCACTTGTTTGTTTGCCTCATAGTTGGACTCATGTGCGGATACTTTGTCTGCGAAGTGACTACCGGACTCAGTCGAGCCCCATTCCTTGTCTAATGATCGGCCTCAGCCTTGGCATGAGGACGAGCATTTTTCCTGCATGGCTTGAGAAGTTTGAAGGAAGCTTGGGGAGGCTTTGGGATTTCCCCGGGCCTCTCTTCAAGCATCACGGTCGTCTCAGGGGTGCGTACACTCTTTTGGGGAAAAAGCTTGGGGAGGCCCAGGAATTTCCCAGGGCCTCTCTTCAAGCGTCATGGTCATCCCAGAGGTGCGTACACTCTTTTGGGGAAAAAGCTTGGGGAGGCCCAGGAATTTCCCAGGGCCTCTCTTCAAGCGTCATGGTCATCCCAGAGGTGCGTACACTCTTTTGGGGAAAAAGCTTGGGGAGGCCCAGGAATTTCCCAGGGCCTCTCTTCAAGCGTCATGGTCATCCCAGAGGGGTGCGTACACTCTTCTGGGGAAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTCATGGTCATCTCAGGGAAATTTCCGAGCCTTTCTTCAAGCTGCATGGTCGTCCCAGGGGTGCGTACACTCTTCTGGGGAAAAAGCTTGGGGAGGCCTGGGAAGTTCCCGAGCCTCTCTTCAAGCATCGTCGTCATCCCAGGGGTGTGTACACTCTTCTGGGGAAAAAGCTTGGGGAGGTCTGGGAAGTTCTGGAGCCTCTCTTCAAGCATCGTCGTCATCCCAGGGGTGCATACACTCTTCTGGGGAAAAAGCTTGGGGAGGCCTGGGAAGTTCCCAAGCCTCTCTTCAAGCATCGTCGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAATGCTTCGGGAGGCCTGGGAATTTCCCGAGCCTCTCTCCAAGCGTTGTGTTATTCTCGAGGGTGCGTACACTCAGTCGGGGAACAAAGTGGTTGGCCTCGACCTTGGCATGAGGCCGACCAGCTCCTTTGTGTCATCTGCGTGCTCAGTCCATAACTCGACTTATGTGCAGAGCATCTCCCTTTCGGCTCGAACCGCTTCAGCTACGATAACAGGTCAAGTGTTGTGGTCTTCCCAGGGGTGCGTACACTTTTCTGGGGAAAAGCTTGGGGAGGCCTGGGAATTTCCCGAGTCTCTCTGCAAGCGCTGTCAAAACTTTTGA

Coding sequence (CDS)

ATGCTCGGCCTCGGCCTTGACATGAGGCTGAGCATTTCTTCTGTATTGTATTCATCCCAGGGGGGCAGAGCTCGACCTTGGCCTCTGGATGGTCGGCCTCGGACTTGGCATGAGGCCGACCAGCTCCTCTGTGTTGTTCGCTTGCTTGTTTTCCATTCCAAGGTAAGAAAATATAATGTCATACCTGGTCTTTTGAGGACAAAGTTCATTCTTGAAGCTGAGGCAGCCGGCCCCGACCTTGGCACGAGGTCGAGCCTCGCTTCTCCATCACTTGTTTGTTTGCCTCATAGTTGGACTCATGTGCGGATACTTTGTCTGCGAAGTGACTACCGGACTCAGTCGAGCCCCATTCCTTGTCTAATGATCGGCCTCAGCCTTGGCATGAGGACGAGCATTTTTCCTGCATGGCTTGAGAAGTTTGAAGGAAGCTTGGGGAGGCTTTGGGATTTCCCCGGGCCTCTCTTCAAGCATCACGGTCGTCTCAGGGGTGCGTACACTCTTTTGGGGAAAAAGCTTGGGGAGGCCCAGGAATTTCCCAGGGCCTCTCTTCAAGCGTCATGGTCATCCCAGAGGTGCGTACACTCTTTTGGGGAAAAAGCTTGGGGAGGCCCAGGAATTTCCCAGGGCCTCTCTTCAAGCGTCATGGTCATCCCAGAGGTGCGTACACTCTTTTGGGGAAAAAGCTTGGGGAGGCCCAGGAATTTCCCAGGGCCTCTCTTCAAGCGTCATGGTCATCCCAGAGGGGTGCGTACACTCTTCTGGGGAAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTCATGGTCATCTCAGGGAAATTTCCGAGCCTTTCTTCAAGCTGCATGGTCGTCCCAGGGGTGCGTACACTCTTCTGGGGAAAAAGCTTGGGGAGGCCTGGGAAGTTCCCGAGCCTCTCTTCAAGCATCGTCGTCATCCCAGGGGTGTGTACACTCTTCTGGGGAAAAAGCTTGGGGAGGTCTGGGAAGTTCTGGAGCCTCTCTTCAAGCATCGTCGTCATCCCAGGGGTGCATACACTCTTCTGGGGAAAAAGCTTGGGGAGGCCTGGGAAGTTCCCAAGCCTCTCTTCAAGCATCGTCGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAATGCTTCGGGAGGCCTGGGAATTTCCCGAGCCTCTCTCCAAGCGTTGTGTTATTCTCGAGGGTGCGTACACTCAGTCGGGGAACAAAGTGGTTGGCCTCGACCTTGGCATGAGGCCGACCAGCTCCTTTGTGTCATCTGCGTGCTCAGTCCATAACTCGACTTATGTGCAGAGCATCTCCCTTTCGGCTCGAACCGCTTCAGCTACGATAACAGGTCAAGTGTTGTGGTCTTCCCAGGGGTGCGTACACTTTTCTGGGGAAAAGCTTGGGGAGGCCTGGGAATTTCCCGAGTCTCTCTGCAAGCGCTGTCAAAACTTTTGA

Protein sequence

MLGLGLDMRLSISSVLYSSQGGRARPWPLDGRPRTWHEADQLLCVVRLLVFHSKVRKYNVIPGLLRTKFILEAEAAGPDLGTRSSLASPSLVCLPHSWTHVRILCLRSDYRTQSSPIPCLMIGLSLGMRTSIFPAWLEKFEGSLGRLWDFPGPLFKHHGRLRGAYTLLGKKLGEAQEFPRASLQASWSSQRCVHSFGEKAWGGPGISQGLSSSVMVIPEVRTLFWGKSLGRPRNFPGPLFKRHGHPRGVRTLFWGKSLGRPRNFPGPLFKRHGHLREISEPFFKLHGRPRGAYTLLGKKLGEAWEVPEPLFKHRRHPRGVYTLLGKKLGEVWEVLEPLFKHRRHPRGAYTLLGKKLGEAWEVPKPLFKHRRHPRGAYTLLGKMLREAWEFPEPLSKRCVILEGAYTQSGNKVVGLDLGMRPTSSFVSSACSVHNSTYVQSISLSARTASATITGQVLWSSQGCVHFSGEKLGEAWEFPESLCKRCQNF
Homology
[Close]
BLAST of Lag0034688 vs. ExPASy TrEMBL
Match: A0A1B8XZD6 (Uncharacterized protein (Fragment) OS=Xenopus tropicalis OX=8364 GN=XENTR_v90028814mg PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 6.1e-06
Identity = 58/182 (31.87%), Postives = 78/182 (42.86%), Query Frame = 0 

Query: 193 VHSFGEKAWGGPGISQGLSSSVMVIPEVRTLFWGKSLGRPRNFPGPLFK--RHGHPRGVR 252
           VH  G+     P I + L+ +  +         GKSL +      PL K    G P   +
Sbjct: 9   VHEIGKPLAKAPEIGKPLAKAPGI---------GKSLAKAPGIGKPLAKAPEIGKPL-AK 68

Query: 253 TLFWGKSLGRPRNFPGPLFKRHGHLREISEPFFKLH--GRPRGAYTLLGKKLGEAWEVPE 312
               GK L +      PL K H    EI +P  K+H  G+P G    +GK LGE  E+ +
Sbjct: 69  APEIGKPLAKVHEIGKPLAKVH----EIGKPLAKVHEIGKPLGKVHEIGKPLGEVHEIGK 128

Query: 313 PLFKHRRHPRGVYTLLGKKLGEVWEVLEPLFK--HRRHPRGAYTLLGKKLGEAWEVPKPL 369
           PL K           +GK LGEV E+ +PL K    R        +GK L +  E+ KPL
Sbjct: 129 PLGKVHE--------IGKPLGEVHEIRKPLAKVHEIRKTLAKVHEIGKTLAKVPEIGKPL 168

The following BLAST results are available for this feature:
BLAST of Lag0034688 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0034688 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0034688 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1B8XZD66.1e-0631.87Uncharacterized protein (Fragment) OS=Xenopus tropicalis OX=8364 GN=XENTR_v90028... [more]
BLAST of Lag0034688 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0034688.1Lag0034688.1mRNA