Lag0034053 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0034053
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionSOB five-like 2
Locationchr3: 4009141 .. 4009692 (+)
RNA-Seq ExpressionLag0034053
SyntenyLag0034053
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCCTTCCCAAATTTTTGGAGTTTCAGAAGAATGTCACAGCAGTGAATCTGGTTGGACTATGTATATTGGATCTCCTGCAGATGGTTCCAGTGATGCTGATGCTGATGCACCTTCTGATCATGATGATGATGATGAAGATGGAAGAACTAAATCTTGTTATGCAAATCATCAAGATGACAGTGATGATTCAATGGCTTCTGATGCTTCTTCAGGCCCAAGTCATCAACAAGGACACCCATTTGGAGGACATGGGAGGCTGAAAAATCCCAATGGCCTGCCTCTCTTCAAAACCAAAACCAAGAAGCCATTGATGGAGAAGCCAAGAGCTGAGAGGAAGGAAGTGAAAGACAAGTTGGTTTTGGTGGGCCAAAACCCAAAGAGTTCAGTTCAGAGCAGTTCAAAGGTAAGAAAGAGCATCTGGATGGGCAAAAGAAACTAGCCAAGCTGGTTTCTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTTGTTTTCTTTGGGTTTTTCATTTATGCTTACTTGTAGGCTGAAACTGAACTGAACTGA

mRNA sequence

ATGGAGCCTTCCCAAATTTTTGGAGTTTCAGAAGAATGTCACAGCAGTGAATCTGGTTGGACTATGTATATTGGATCTCCTGCAGATGGTTCCAGTGATGCTGATGCTGATGCACCTTCTGATCATGATGATGATGATGAAGATGGAAGAACTAAATCTTGTTATGCAAATCATCAAGATGACAGTGATGATTCAATGGCTTCTGATGCTTCTTCAGGCCCAAGTCATCAACAAGGACACCCATTTGGAGGACATGGGAGGCTGAAAAATCCCAATGGCCTGCCTCTCTTCAAAACCAAAACCAAGAAGCCATTGATGGAGAAGCCAAGAGCTGAGAGGAAGGAAGTGAAAGACAAGTTGGTTTTGGTGGGCCAAAACCCAAAGAGTTCAGTTCAGAGCAGTTCAAAGGCTGAAACTGAACTGAACTGA

Coding sequence (CDS)

ATGGAGCCTTCCCAAATTTTTGGAGTTTCAGAAGAATGTCACAGCAGTGAATCTGGTTGGACTATGTATATTGGATCTCCTGCAGATGGTTCCAGTGATGCTGATGCTGATGCACCTTCTGATCATGATGATGATGATGAAGATGGAAGAACTAAATCTTGTTATGCAAATCATCAAGATGACAGTGATGATTCAATGGCTTCTGATGCTTCTTCAGGCCCAAGTCATCAACAAGGACACCCATTTGGAGGACATGGGAGGCTGAAAAATCCCAATGGCCTGCCTCTCTTCAAAACCAAAACCAAGAAGCCATTGATGGAGAAGCCAAGAGCTGAGAGGAAGGAAGTGAAAGACAAGTTGGTTTTGGTGGGCCAAAACCCAAAGAGTTCAGTTCAGAGCAGTTCAAAGGCTGAAACTGAACTGAACTGA

Protein sequence

MEPSQIFGVSEECHSSESGWTMYIGSPADGSSDADADAPSDHDDDDEDGRTKSCYANHQDDSDDSMASDASSGPSHQQGHPFGGHGRLKNPNGLPLFKTKTKKPLMEKPRAERKEVKDKLVLVGQNPKSSVQSSSKAETELN
Homology
BLAST of Lag0034053 vs. NCBI nr
Match: XP_022135291.1 (uncharacterized protein LOC111007289 isoform X1 [Momordica charantia])

HSP 1 Score: 193.4 bits (490), Expect = 1.4e-45
Identity = 108/150 (72.00%), Postives = 121/150 (80.67%), Query Frame = 0

Query: 1   MEPSQIFGVSEECHSSESGWTMYIGSPADGSSDADADAPSDHDDDDEDGRTKSCYANHQD 60
           MEPSQIFGV+EECHSSESGWTMYIGSPA GSSDADADA    DD +++   + CY N+QD
Sbjct: 1   MEPSQIFGVAEECHSSESGWTMYIGSPAGGSSDADADAAPSGDDGEDEDEDEDCYGNNQD 60

Query: 61  DSDDSMASDASSGPSHQQGHPFGGHGRLKNPN--GLP-------LFKTKTKKPLMEKPRA 120
           +SDDSMASDASSGPSHQ GHPFGG+GR+KNPN  GL         F+TKTKKPLMEK RA
Sbjct: 61  ESDDSMASDASSGPSHQVGHPFGGNGRVKNPNPHGLKQQSEVKFCFETKTKKPLMEKQRA 120

Query: 121 ERKEVKDKLVLVGQNPKSSVQSSSKAETEL 142
           ERKEVK+KLVLVGQ PK+SVQSSSK    +
Sbjct: 121 ERKEVKEKLVLVGQKPKTSVQSSSKVRKSI 150

BLAST of Lag0034053 vs. NCBI nr
Match: XP_022135292.1 (uncharacterized protein LOC111007289 isoform X2 [Momordica charantia])

HSP 1 Score: 176.0 bits (445), Expect = 2.3e-40
Identity = 100/141 (70.92%), Postives = 112/141 (79.43%), Query Frame = 0

Query: 10  SEECHSSESGWTMYIGSPADGSSDADADAPSDHDDDDEDGRTKSCYANHQDDSDDSMASD 69
           SEECHSSESGWTMYIGSPA GSSDADADA    DD +++   + CY N+QD+SDDSMASD
Sbjct: 4   SEECHSSESGWTMYIGSPAGGSSDADADAAPSGDDGEDEDEDEDCYGNNQDESDDSMASD 63

Query: 70  ASSGPSHQQGHPFGGHGRLKNPN--GLP-------LFKTKTKKPLMEKPRAERKEVKDKL 129
           ASSGPSHQ GHPFGG+GR+KNPN  GL         F+TKTKKPLMEK RAERKEVK+KL
Sbjct: 64  ASSGPSHQVGHPFGGNGRVKNPNPHGLKQQSEVKFCFETKTKKPLMEKQRAERKEVKEKL 123

Query: 130 VLVGQNPKSSVQSSSKAETEL 142
           VLVGQ PK+SVQSSSK    +
Sbjct: 124 VLVGQKPKTSVQSSSKVRKSI 144

BLAST of Lag0034053 vs. NCBI nr
Match: XP_022974149.1 (uncharacterized protein LOC111472737 [Cucurbita maxima])

HSP 1 Score: 161.0 bits (406), Expect = 7.6e-36
Identity = 96/141 (68.09%), Postives = 102/141 (72.34%), Query Frame = 0

Query: 1   MEPSQIFGVSEECHSSESGWTMYIGSPADGSSDADADAPSDHDDDDEDGRTKSCYANHQD 60
           ME SQ  GVSEECHSSESGWTMYIGSP D SSD       D DDD E G+ K  +ANHQD
Sbjct: 1   MESSQNVGVSEECHSSESGWTMYIGSPVDDSSD------GDEDDDVEYGKNKGFHANHQD 60

Query: 61  DSDDSMASDASSGPSHQQGHPFGGHGRLKNPNGLPLFKTKTKKPLMEKPRAERKEVKDKL 120
           DSDDSMASDASSGPSHQ  HPF GHG +K+           +KPLMEK RAERKEVKDKL
Sbjct: 61  DSDDSMASDASSGPSHQPDHPFAGHGSMKH-----------QKPLMEKHRAERKEVKDKL 120

Query: 121 VLVGQNPKSSVQSSSKAETEL 142
           VLVGQ PKSSVQSSSK    +
Sbjct: 121 VLVGQKPKSSVQSSSKVRKSI 124

BLAST of Lag0034053 vs. NCBI nr
Match: XP_022933470.1 (uncharacterized protein LOC111440875 [Cucurbita moschata] >KAG6587616.1 hypothetical protein SDJN03_16181, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 156.4 bits (394), Expect = 1.9e-34
Identity = 93/141 (65.96%), Postives = 102/141 (72.34%), Query Frame = 0

Query: 1   MEPSQIFGVSEECHSSESGWTMYIGSPADGSSDADADAPSDHDDDDEDGRTKSCYANHQD 60
           ME SQ  GVSEECHSSESGWTMYIGSP D SSD       D D+D E G+ +  +ANHQD
Sbjct: 1   MESSQNVGVSEECHSSESGWTMYIGSPVDDSSD------GDEDNDVEYGKNRVFHANHQD 60

Query: 61  DSDDSMASDASSGPSHQQGHPFGGHGRLKNPNGLPLFKTKTKKPLMEKPRAERKEVKDKL 120
           DSDDSMASDASSGPSHQ  HPFGGHG +K+           +KPLMEK RAERKEVK+KL
Sbjct: 61  DSDDSMASDASSGPSHQPDHPFGGHGSMKH-----------QKPLMEKHRAERKEVKEKL 120

Query: 121 VLVGQNPKSSVQSSSKAETEL 142
           VLVGQ PKSS QSSSK    +
Sbjct: 121 VLVGQKPKSSAQSSSKVRKSI 124

BLAST of Lag0034053 vs. NCBI nr
Match: XP_023531634.1 (uncharacterized protein LOC111793816 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 156.0 bits (393), Expect = 2.4e-34
Identity = 93/141 (65.96%), Postives = 102/141 (72.34%), Query Frame = 0

Query: 1   MEPSQIFGVSEECHSSESGWTMYIGSPADGSSDADADAPSDHDDDDEDGRTKSCYANHQD 60
           ME SQ  GVSEECHSSESGWTMYIGSP D SSD       D D+D E G+ K  +ANHQD
Sbjct: 1   MESSQNVGVSEECHSSESGWTMYIGSPVDDSSD------GDEDNDVEYGKNKGFHANHQD 60

Query: 61  DSDDSMASDASSGPSHQQGHPFGGHGRLKNPNGLPLFKTKTKKPLMEKPRAERKEVKDKL 120
           DSDDSMASDASSGPSHQ  HPFGGHG +K+           +KPL+EK R ERKEVK+KL
Sbjct: 61  DSDDSMASDASSGPSHQPDHPFGGHGSMKH-----------QKPLIEKHRDERKEVKEKL 120

Query: 121 VLVGQNPKSSVQSSSKAETEL 142
           VLVGQ PKSSVQSSSK    +
Sbjct: 121 VLVGQKPKSSVQSSSKVRKSI 124

BLAST of Lag0034053 vs. ExPASy Swiss-Prot
Match: Q9CA45 (Protein SOB FIVE-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=SOFL2 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.1e-04
Identity = 43/109 (39.45%), Postives = 50/109 (45.87%), Query Frame = 0

Query: 1   MEPSQIFGVSEECHSSESGWTMYIGSPADGS----------------SDADADAPSDHDD 60
           ME  +I G +EE  S ESGWTMYI     G+                 + D D   D DD
Sbjct: 1   MESPRIHGGAEEKSSCESGWTMYIEDTFHGNHHSEVVYEEEDDGFSVKEVDDDGDGDEDD 60

Query: 61  DDEDGRTKSCYANHQDDSDDSMASDASSGPS-HQQGHPFGGHGRLKNPN 93
           DD+D    S      ++SDDSM SDASS PS HQ       H   KN N
Sbjct: 61  DDDDDDDSS-----NNESDDSMTSDASSWPSTHQPPRSTKNHAAAKNSN 104

BLAST of Lag0034053 vs. ExPASy Swiss-Prot
Match: Q9LEZ1 (Protein SUPPRESSOR OF PHYTOCHROME B 5 OS=Arabidopsis thaliana OX=3702 GN=SOB5 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.7e-04
Identity = 34/74 (45.95%), Postives = 40/74 (54.05%), Query Frame = 0

Query: 1  MEPSQIFGVSEECHSSESGWTMYIGSPADGSSDADADAPSDHDDDDEDGRTKSCYANHQD 60
          ME + IFG  E+C S ESGWTMY+ S    S D D D     DD++E+            
Sbjct: 1  MESANIFGSDEDCRSCESGWTMYLASQ---SHDRDDDCYYGDDDEEEE----------DS 60

Query: 61 DSDDSMASDASSGP 75
          D  DSM SDASSGP
Sbjct: 61 DGGDSMDSDASSGP 61

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022135291.11.4e-4572.00uncharacterized protein LOC111007289 isoform X1 [Momordica charantia][more]
XP_022135292.12.3e-4070.92uncharacterized protein LOC111007289 isoform X2 [Momordica charantia][more]
XP_022974149.17.6e-3668.09uncharacterized protein LOC111472737 [Cucurbita maxima][more]
XP_022933470.11.9e-3465.96uncharacterized protein LOC111440875 [Cucurbita moschata] >KAG6587616.1 hypothet... [more]
XP_023531634.12.4e-3465.96uncharacterized protein LOC111793816 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Q9CA452.1e-0439.45Protein SOB FIVE-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=SOFL2 PE=1 SV=1[more]
Q9LEZ12.7e-0445.95Protein SUPPRESSOR OF PHYTOCHROME B 5 OS=Arabidopsis thaliana OX=3702 GN=SOB5 PE... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..142
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 101..121
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 125..142
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..65
NoneNo IPR availablePANTHERPTHR33347:SF31OS08G0486700 PROTEINcoord: 1..119
IPR044670SOB-five-Like (SOFL) familyPANTHERPTHR33347OSJNBA0091C07.3 PROTEINcoord: 1..119

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0034053.1Lag0034053.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009736 cytokinin-activated signaling pathway
biological_process GO:0009691 cytokinin biosynthetic process
biological_process GO:0009690 cytokinin metabolic process