Lag0032598 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0032598
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionDUF4283 domain-containing protein
Locationchr11: 35117424 .. 35117999 (+)
RNA-Seq ExpressionLag0032598
SyntenyLag0032598
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGACCCGAAGAGCCTCATCTTTTAGGATTGAAAGGAAAACATTCTCCATTGATGCAAACCCAAAATACCCAAGCCTTTACAGACTCACTGAAGCCACCAACGAAAGAAGTTTCTCCTTGACTCTCTCTAAAGAAGCATTAATCTGGATCAACACTTGCTTCTCTCGGCTCTGTGACCTCCCTTTGAATCAGAAGTTCTTCAATGAAGCTAGAGTAGAAGAAATAGTCATATGGGTTGAAGAGATTACAAACAAAAAAGGCCACTCAGTTGAAATAGCCAAACTTGGACCAAATGGAGGTTTAAACAAGCTTATAATCCTTGTCAGTGATGAAAGAAAGGGTTGGCGCAACCTTCTAGCCAACATTAACTCCCTCATTACCCCCACCAACCGAAGTGTAAAGGACACGAGAGAAGTAAATGAAGTTAGAGAAGCCATCTCATATAAAGAAACTGTTGAAAAGAATCAGAATGAGCCTCCACTCATCATGGACAAATGGCAAAAATTACTGAGCCAAATAGTACAGAACAAAATGCCTCCAATACCTAGTTTGCAGCCCTGTATTTTGATTTAG

mRNA sequence

ATGACGACCCGAAGAGCCTCATCTTTTAGGATTGAAAGGAAAACATTCTCCATTGATGCAAACCCAAAATACCCAAGCCTTTACAGACTCACTGAAGCCACCAACGAAAGAAGTTTCTCCTTGACTCTCTCTAAAGAAGCATTAATCTGGATCAACACTTGCTTCTCTCGGCTCTGTGACCTCCCTTTGAATCAGAAGTTCTTCAATGAAGCTAGAGTAGAAGAAATAGTCATATGGGTTGAAGAGATTACAAACAAAAAAGGCCACTCAGTTGAAATAGCCAAACTTGGACCAAATGGAGGTTTAAACAAGCTTATAATCCTTGTCAGTGATGAAAGAAAGGGTTGGCGCAACCTTCTAGCCAACATTAACTCCCTCATTACCCCCACCAACCGAAGTGTAAAGGACACGAGAGAAGTAAATGAAGTTAGAGAAGCCATCTCATATAAAGAAACTGTTGAAAAGAATCAGAATGAGCCTCCACTCATCATGGACAAATGGCAAAAATTACTGAGCCAAATAGTACAGAACAAAATGCCTCCAATACCTAGTTTGCAGCCCTGTATTTTGATTTAG

Coding sequence (CDS)

ATGACGACCCGAAGAGCCTCATCTTTTAGGATTGAAAGGAAAACATTCTCCATTGATGCAAACCCAAAATACCCAAGCCTTTACAGACTCACTGAAGCCACCAACGAAAGAAGTTTCTCCTTGACTCTCTCTAAAGAAGCATTAATCTGGATCAACACTTGCTTCTCTCGGCTCTGTGACCTCCCTTTGAATCAGAAGTTCTTCAATGAAGCTAGAGTAGAAGAAATAGTCATATGGGTTGAAGAGATTACAAACAAAAAAGGCCACTCAGTTGAAATAGCCAAACTTGGACCAAATGGAGGTTTAAACAAGCTTATAATCCTTGTCAGTGATGAAAGAAAGGGTTGGCGCAACCTTCTAGCCAACATTAACTCCCTCATTACCCCCACCAACCGAAGTGTAAAGGACACGAGAGAAGTAAATGAAGTTAGAGAAGCCATCTCATATAAAGAAACTGTTGAAAAGAATCAGAATGAGCCTCCACTCATCATGGACAAATGGCAAAAATTACTGAGCCAAATAGTACAGAACAAAATGCCTCCAATACCTAGTTTGCAGCCCTGTATTTTGATTTAG

Protein sequence

MTTRRASSFRIERKTFSIDANPKYPSLYRLTEATNERSFSLTLSKEALIWINTCFSRLCDLPLNQKFFNEARVEEIVIWVEEITNKKGHSVEIAKLGPNGGLNKLIILVSDERKGWRNLLANINSLITPTNRSVKDTREVNEVREAISYKETVEKNQNEPPLIMDKWQKLLSQIVQNKMPPIPSLQPCILI
Homology
BLAST of Lag0032598 vs. NCBI nr
Match: KAA0040039.1 (hypothetical protein E6C27_scaffold366G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 2.6e-07
Identity = 42/149 (28.19%), Postives = 78/149 (52.35%), Query Frame = 0

Query: 8   SFRIERKTF--SIDANPKYPSLYRLTEATNERSFSLTLSKEALIWINTCFSRLCDLPLNQ 67
           S  IE+K F  S+D N        +TE    +SFS+ ++ E+L W+ + F  L D P   
Sbjct: 10  SCTIEKKDFVLSVD-NWSRDFKLLITEVGPYKSFSIAVTLESLEWLKSSFRTLLDTPRTT 69

Query: 68  KFFNEARVEEIVIWVEEITNKKGHSVEIAKLGPNGGLNKLIILVSDERKGWRNLLANINS 127
           +FF E R EE  +WV++  N+KG+  EI ++   G    +++    E+ GW + ++ ++ 
Sbjct: 70  RFFLEKRFEECCLWVQKTYNRKGYIAEIYRVDDRGRKCCILVPEGAEKSGWAHFVSLLHG 129

Query: 128 LITPTNRSVKDTREVNEVREAISYKETVE 155
              P++++   T    ++R+  S  ++ E
Sbjct: 130 KKDPSSKTNYRTILNTKMRDGFSSSDSGE 157

BLAST of Lag0032598 vs. NCBI nr
Match: TYK10355.1 (hypothetical protein E5676_scaffold367G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-06
Identity = 45/157 (28.66%), Postives = 79/157 (50.32%), Query Frame = 0

Query: 8   SFRIERKTFSIDANPKYPSLYRL-TEATNERSFSLTLSKEALIWINTCFSRLCDLPLNQK 67
           S  IE+K F +  + +   L  L TE    +SFS+ ++ E+L W+ + F  L D P   +
Sbjct: 100 SCTIEKKDFVLSVDNQSRDLKLLITEVGPYKSFSIAVTLESLEWLKSSFRTLLDTPRTTR 159

Query: 68  FFNEARVEEIVIWVEEITNKKGHSVEIAKLGPNGGLNKLIILVSDERKGWR---NLLANI 127
           FF E R E+  +WV++  N+KG+  EI ++   G    +++    E+ GW    +LL   
Sbjct: 160 FFLEKRFEDYCLWVQKTYNRKGYIAEIYRVDDRGRKCCILVPEGSEKSGWAQFVSLLYGK 219

Query: 128 NSLITPTN-RSVKDTREVNEVREAISYKETVEKNQNE 160
               T TN R++ +T+  +    + S  +T  ++  E
Sbjct: 220 KDSSTKTNYRTLLNTKLKDRFSSSESGDDTKRRSYAE 256

BLAST of Lag0032598 vs. NCBI nr
Match: KAA0067710.1 (hypothetical protein E6C27_scaffold352G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 4.9e-06
Identity = 31/123 (25.20%), Postives = 64/123 (52.03%), Query Frame = 0

Query: 30  LTEATNERSFSLTLSKEALIWINTCFSRLCDLPLNQKFFNEARVEEIVIWVEEITNKKGH 89
           +TE    +SFS+ ++ E+L W+ + F  L D P   +FF + R EE  +WV++  N+KG+
Sbjct: 3   ITEVGPYKSFSIAVTLESLEWLKSTFKTLLDTPRTTRFFLKKRFEEYCLWVQKTYNRKGY 62

Query: 90  SVEIAKLGPNGGLNKLIILVSDERKGWRNLLANINSLITPTNRSVKDTREVNEVREAISY 149
             EI ++   G    +++    E+ GW   ++ ++     + +    T    ++++ +S 
Sbjct: 63  IAEIYRVDDRGRKCCILVPEGSEKSGWAQFVSLLHGKKDASTKENYKTLLGTKMKDRLSS 122

Query: 150 KET 153
            E+
Sbjct: 123 SES 125

BLAST of Lag0032598 vs. NCBI nr
Match: KAA0050054.1 (hypothetical protein E6C27_scaffold675G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 6.4e-06
Identity = 35/116 (30.17%), Postives = 61/116 (52.59%), Query Frame = 0

Query: 8   SFRIERK--TFSIDANPKYPSLYRLTEATNERSFSLTLSKEALIWINTCFSRLCDLPLNQ 67
           S  IE+K   FS+D   +   L  +TE    +SFS+ ++ E+L W+ + F  L D     
Sbjct: 48  SCTIEKKDFVFSVDNRSRDLKLL-ITEVGPYKSFSIAVTLESLEWLKSSFRTLLDTLRTT 107

Query: 68  KFFNEARVEEIVIWVEEITNKKGHSVEIAKLGPNGGLNKLIILVSDERKGWRNLLA 122
           +FF E R E+  +WV++  N+KG+  EI ++   G    +++    E+ GW   ++
Sbjct: 108 RFFLEKRFEDYCLWVQKTYNRKGYIAEIYRVDDRGRKCCILVPEGSEKSGWAQFVS 162

BLAST of Lag0032598 vs. NCBI nr
Match: KAA0063662.1 (hypothetical protein E6C27_scaffold329G001780 [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 1.9e-05
Identity = 43/155 (27.74%), Postives = 77/155 (49.68%), Query Frame = 0

Query: 11  IERK--TFSIDANPKYPSLYRLTEATNERSFSLTLSKEALIWINTCFSRLCDLPLNQKFF 70
           +E+K    S+D   +  +L  +TE    +SFS+ ++ ++L W+ T F  L + P   +FF
Sbjct: 13  VEKKDSVLSVDKRSRESNLL-ITEVGPYKSFSIAITPDSLEWLKTTFKALLNTPRTTRFF 72

Query: 71  NEARVEEIVIWVEEITNKKGHSVEIAKLGPNGGLNKLIILVSD--ERKGWRNLLANINSL 130
            E R  +  +WV++I N++G+  EI ++   G   K  ILV +  ++ GW    A  N +
Sbjct: 73  VEKRYVDFCLWVQKIHNRRGYIAEIYRVDDRG--RKCCILVPEGLDKTGW----ALFNDM 132

Query: 131 ITPTNRSVKDTREVNEVREAISYKETVEKNQNEPP 162
           +T      K T +  E+     Y +   K + + P
Sbjct: 133 LT-----CKKTSDKKEISTRHFYNQDKGKEKIQKP 155

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0040039.12.6e-0728.19hypothetical protein E6C27_scaffold366G00060 [Cucumis melo var. makuwa][more]
TYK10355.11.7e-0628.66hypothetical protein E5676_scaffold367G00330 [Cucumis melo var. makuwa][more]
KAA0067710.14.9e-0625.20hypothetical protein E6C27_scaffold352G00160 [Cucumis melo var. makuwa][more]
KAA0050054.16.4e-0630.17hypothetical protein E6C27_scaffold675G00340 [Cucumis melo var. makuwa][more]
KAA0063662.11.9e-0527.74hypothetical protein E6C27_scaffold329G001780 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0032598.1Lag0032598.1mRNA