Lag0032437 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0032437
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr11: 32529558 .. 32530432 (-)
RNA-Seq ExpressionLag0032437
SyntenyLag0032437
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCTTTAGGGACCTGGAGACCTTTAATCAGGCCCTACTAGCCAAGCGGTGCTGGAGGATAGTCAGTCAGTCGACTTCTTACTTGGCTCGTGTTCTGAAAGGACGGTATTATCCGTCCTCGGAGTTCTTGGATGCAATGGTAGGGAATTGACCTTCCTTTATCTGGAGGAGCCTTATGTGAGGGAAGGAGTTGCTGGAGAGGGGGATTCGTTGGAGGATTGGGAATGGAGAAAGGGTGAGGGTGTATGGGTCCAATTGGGTTCCTCGTGATACTAATCTAAGGGTTGCTTCACCGATGACAATGCAGCCTGTTGCTAGAGTTAGGGATTTGTTCATGGCGTCAGGGCAATGGAATGAGAATCTTATTCGGCAACACTTTAGTCCGCAGGAGGTAAGGTATATTCTCTCTATTCCTTTACGCTAGGTTGCTTGCGATGATGTGGTTATTTGGCATTTTGAGAAGTCTGGTTTATATTCAGTAAAAGTGGGTATCGTCTAGGCCAAGGCCCTTTGTTGGCCCAAAGCCCTTCTTCTTCATCTCCTGAGTTAATAAATAGATGGTGGAATGCTTGTTGGAATATGAAGATGCCTAGTAAGATTAAAATATTTTTCTAGAGATTGTATTTAGATCGGCTGTCCACGATGGATAACTTGGGTAAGCGGGAAATTGATTTACCGAATATATGTGTGTGATGTGGTCGGATGGAGGAATCGAGTCTCCACTTTTTCTGGCATTGTAAACTTACGAACGAGATTATGTGGTCTGCAGGTTTTGGGACTATTTTGTCCAAATGCAAGGCAGACGATATCAAGTTCCTCCTCCGAGATGTGAAGGATGAGCTGGAGTGGGTGGTGTTATTGTGGGCGATCTGA

mRNA sequence

ATGGGCTTTAGGGACCTGGAGACCTTTAATCAGGCCCTACTAGCCAAGCGGTGCTGGAGGATAGTCAGTCAGTCGACTTCTTACTTGGCTCGTGTTCTGAAAGGACGGTATTATCCGTCCTCGGAGTTCTTGGATGCAATGCCTGTTGCTAGAGTTAGGGATTTGTTCATGGCGTCAGGGCAATGGAATGAGAATCTTATTCGGCAACACTTTAGTCCGCAGGAGGTAAGTAAAAGTGGGTATCGTCTAGGCCAAGGCCCTTTGTTGGCCCAAAGCCCTTCTTCTTCATCTCCTGAGTTAATAAATAGATGGTGGAATGCTTGTTGGAATATGAAGATGCCTAGTTTTGGGACTATTTTGTCCAAATGCAAGGCAGACGATATCAAGTTCCTCCTCCGAGATGTGAAGGATGAGCTGGAGTGGGTGGTGTTATTGTGGGCGATCTGA

Coding sequence (CDS)

ATGGGCTTTAGGGACCTGGAGACCTTTAATCAGGCCCTACTAGCCAAGCGGTGCTGGAGGATAGTCAGTCAGTCGACTTCTTACTTGGCTCGTGTTCTGAAAGGACGGTATTATCCGTCCTCGGAGTTCTTGGATGCAATGCCTGTTGCTAGAGTTAGGGATTTGTTCATGGCGTCAGGGCAATGGAATGAGAATCTTATTCGGCAACACTTTAGTCCGCAGGAGGTAAGTAAAAGTGGGTATCGTCTAGGCCAAGGCCCTTTGTTGGCCCAAAGCCCTTCTTCTTCATCTCCTGAGTTAATAAATAGATGGTGGAATGCTTGTTGGAATATGAAGATGCCTAGTTTTGGGACTATTTTGTCCAAATGCAAGGCAGACGATATCAAGTTCCTCCTCCGAGATGTGAAGGATGAGCTGGAGTGGGTGGTGTTATTGTGGGCGATCTGA

Protein sequence

MGFRDLETFNQALLAKRCWRIVSQSTSYLARVLKGRYYPSSEFLDAMPVARVRDLFMASGQWNENLIRQHFSPQEVSKSGYRLGQGPLLAQSPSSSSPELINRWWNACWNMKMPSFGTILSKCKADDIKFLLRDVKDELEWVVLLWAI
Homology
BLAST of Lag0032437 vs. NCBI nr
Match: XP_013658904.1 (uncharacterized protein LOC106363756 [Brassica napus])

HSP 1 Score: 75.9 bits (185), Expect = 3.3e-10
Identity = 51/154 (33.12%), Postives = 72/154 (46.75%), Query Frame = 0

Query: 1   MGFRDLETFNQALLAKRCWRIVSQSTSYLARVLKGRYYPSSEFLDAMPVA------RVRD 60
           +GF+D+E FNQ LLAK+ WR+     S LAR+L+ RY+P S FL+ +P A       + D
Sbjct: 252 LGFKDIEKFNQVLLAKQAWRVWKHHDSLLARILQHRYFPRSLFLECVPRAPRYRQDAIVD 311

Query: 61  LFM--------ASGQWNENLIRQHFSPQEV---------------------------SKS 113
           L +        AS +WNE  +RQ F  ++V                           SKS
Sbjct: 312 LTLTVDHLINPASKRWNETRVRQLFEEEDVSIVLNTRFNLRSGDSLVWGFSRSGFYDSKS 371

BLAST of Lag0032437 vs. NCBI nr
Match: XP_013594406.1 (PREDICTED: uncharacterized protein LOC106302444 [Brassica oleracea var. oleracea])

HSP 1 Score: 75.9 bits (185), Expect = 3.3e-10
Identity = 51/154 (33.12%), Postives = 72/154 (46.75%), Query Frame = 0

Query: 1   MGFRDLETFNQALLAKRCWRIVSQSTSYLARVLKGRYYPSSEFLDAMPVA------RVRD 60
           +GF+D+E FNQ LLAK+ WR+     S LAR+L+ RY+P S FL+ +P A       + D
Sbjct: 252 LGFKDIEKFNQVLLAKQAWRVWKHHDSLLARILQHRYFPRSLFLECVPRAPRYRQDAIVD 311

Query: 61  LFM--------ASGQWNENLIRQHFSPQEV---------------------------SKS 113
           L +        AS +WNE  +RQ F  ++V                           SKS
Sbjct: 312 LTLTVDHLINPASKRWNETRVRQLFEEEDVSIVLNTRFNLRSGDSLVWGFSRSGFYDSKS 371

BLAST of Lag0032437 vs. NCBI nr
Match: XP_022150918.1 (uncharacterized protein LOC111018954 [Momordica charantia])

HSP 1 Score: 74.7 bits (182), Expect = 7.4e-10
Identity = 57/202 (28.22%), Postives = 79/202 (39.11%), Query Frame = 0

Query: 1   MGFRDLETFNQALLAKRCWRIVSQSTSYLARVLKGRYYPSSEFLDA-------------- 60
           MGFRDLE FN+ALLAK+CWRI++   S L+RVLKGRY+    F++A              
Sbjct: 646 MGFRDLELFNKALLAKQCWRILNHPNSMLSRVLKGRYFKDCSFMEAKISGNPSYIWRSIL 705

Query: 61  -----------------------------------------MP-VARVRDLF-MASGQWN 116
                                                    +P V+RV  L     G W 
Sbjct: 706 WGRDLLKKGLRWRIGNGDSVFIYGDNWVPNQPTLKILSSPRLPLVSRVSSLVDHEEGGWQ 765

BLAST of Lag0032437 vs. NCBI nr
Match: ONI09819.1 (hypothetical protein PRUPE_4G011200 [Prunus persica])

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-09
Identity = 58/203 (28.57%), Postives = 81/203 (39.90%), Query Frame = 0

Query: 1    MGFRDLETFNQALLAKRCWRIVSQSTSYLARVLKGRYYPSSEFLDA-------------- 60
            +GFRDLE FNQALLAK+CWRI+    S +AR+ + RY+PS  FL+A              
Sbjct: 806  LGFRDLEAFNQALLAKQCWRILRTPESLVARIFRARYHPSVPFLEAEVGTNPSFIWGSLQ 865

Query: 61   -----------------------------------------MPVA-RVRDLFMASGQWNE 116
                                                     +P++ RV DLF +SGQWN 
Sbjct: 866  WGKELLNKGVRWRVGSGVSIQVYTDKWLPAPSCFKIMSPPQLPLSTRVCDLFTSSGQWNV 925

BLAST of Lag0032437 vs. NCBI nr
Match: ONI01138.1 (hypothetical protein PRUPE_6G123900 [Prunus persica])

HSP 1 Score: 72.8 bits (177), Expect = 2.8e-09
Identity = 57/200 (28.50%), Postives = 79/200 (39.50%), Query Frame = 0

Query: 1   MGFRDLETFNQALLAKRCWRIVSQSTSYLARVLKGRYYPSSEFLDA-------------- 60
           +GFRDLE FNQALLAK+CWRI+    S +AR+ + RY+PS  FL+A              
Sbjct: 519 LGFRDLEAFNQALLAKQCWRILRTPESLVARIFRARYHPSVPFLEAEVGTNPSFIWRSLQ 578

Query: 61  -----------------------------------------MPVA-RVRDLFMASGQWNE 116
                                                    +P++ RV DLF +SGQWN 
Sbjct: 579 WGKELLNKGLRWRVGSGVSIQVYTDKWLPAPSCFKIMSPPQLPLSTRVCDLFTSSGQWNV 638

BLAST of Lag0032437 vs. ExPASy Swiss-Prot
Match: P93295 (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 6.8e-06
Identity = 23/45 (51.11%), Postives = 34/45 (75.56%), Query Frame = 0

Query: 1   MGFRDLETFNQALLAKRCWRIVSQSTSYLARVLKGRYYPSSEFLD 46
           +GFRDL  FNQALLAK+ +RI+ Q  + L+R+L+ RY+P S  ++
Sbjct: 57  LGFRDLGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMME 101

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_013658904.13.3e-1033.12uncharacterized protein LOC106363756 [Brassica napus][more]
XP_013594406.13.3e-1033.12PREDICTED: uncharacterized protein LOC106302444 [Brassica oleracea var. oleracea... [more]
XP_022150918.17.4e-1028.22uncharacterized protein LOC111018954 [Momordica charantia][more]
ONI09819.11.3e-0928.57hypothetical protein PRUPE_4G011200 [Prunus persica][more]
ONI01138.12.8e-0928.50hypothetical protein PRUPE_6G123900 [Prunus persica][more]
Match NameE-valueIdentityDescription
P932956.8e-0651.11Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 ... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0032437.1Lag0032437.1mRNA