Lag0032303 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0032303
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr11: 30101773 .. 30103006 (-)
RNA-Seq Expression	Lag0032303
Synteny	Lag0032303

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGCTGAGCGCCCATTTTTTACATAGTTCGCAAGACCTGTTCACCTACACCCAGTGCCAGGATTCCTGCATTGTTGGAGAGAGCTTGGGGAAGCCCGGAAAGTCCCTGGACCCTCGCTCAGGCATAACGTTCATCCCAGGGGTGCGTGCACTCTTCTGGGGCAAGGTACTTGGGGAGGCCAAGGAATTTCCCGAGCCTCTCTTCAAGCATAATGTTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGTGCTTGGGGAGGCCAAGGAATTTCCCGAGCCTCTCTTCAAGCATAATGCTCCTCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGTGCTTGGGGAGGCCAAGGAATTTCCCGAGCCTCTCTTCAAGCATAATGTTCCTCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGTGCTTGGGGAGGCCAAGGAATTTCCCGAGCCTCTCTTCAAGCATAATGTTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGTGCTTGGGGAGGCCAAGGAATTTCCCGAGCCTCTCTTCAAGCATAATGCTCCTCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGTGCTTGGGGAGGCCAAGGAATTTCCCGAGCCTCTCTTCAAGCATAATGTTCCTCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGTGCTTGGGGAGGCCAAGGAATTTCCCGAGCCTCTCTTCAAGCATAATGTTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGTGCTTGGGGAGGCCAAGGAATTTCCCGAGCCTCTCTTCAAGCATAATGTTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGTGCTTGGGGAGGCCAAGGAATTTCCCGAGCCTCTCTTCAAGCATAATGTTCATCCCAGGGGTGCGTACACTCTTCTGGGAAAGGTGCTTGGGGAGGCCAAGGAATTTCCCGAGCCTCTCTTCAAGCATAATGTTCCTCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGTGCTTGGGGAGGCCAAGGAATTTCCCGAGCCTCTCTTCAAGCATAATGCTCCTCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGTGCTTGGGGAGGCCAAGGAATTTCCCGAGCCTCTCTTCAAGCATAATGTTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGTGCTTGGGGAGGCCAAGGAATTTCCCGAGCCTCTCTTCAAGCATAA

mRNA sequence

ATGAGGCTGAGCGCCCATTTTTTACATAGTTCGCAAGACCTGTTCACCTACACCCAGTGCCAGGATTCCTGCATTGTTGGAGAGAGCTTGGGGAAGCCCGGAAAGTCCCTGGACCCTCGCTCAGGCATAACGTTCATCCCAGGGGTGCGTGCACTCTTCTGGGGCAAGGTACTTGGGGAGGCCAAGGAATTTCCCGAGCCTCTCTTCAAGCATAATGTTCATCCCAGGGGGGTGCGTACACTCTTCTGGGGAAAGGTGCTTGGGGAGGCCAAGGAATTTCCCGAGCCTCTCTTCAAGCATAATGTTCCTCCCAGGGGGGTGCGTACACTCTTCTGGGGAAAGGTGCTTGGGGAGGCCAAGGAATTTCCCGAGCCTCTCTTCAAGCATAATGCTCCTCCCAGGGGGGTGCGTACACTCTTCTGGGGAAAGGTGCTTGGGGAGGCCAAGGAATTTCCCGAGCCTCTCTTCAAGCATAATGTTCATCCCAGGGGGGTGCGTACACTCTTCTGGGGAAAGGTGCTTGGGGAGGCCAAGGAATTTCCCGAGCCTCTCTTCAAGCATAATGTTCATCCCAGGGGTGCGTACACTCTTCTGGGAAAGGTGCTTGGGGAGGCCAAGGAATTTCCCGAGCCTCTCTTCAAGCATAATGTTCCTCCCAGGGGGGTGCGTACACTCTTCTGGGGAAAGGTGCTTGGGGAGGCCAAGGAATTTCCCGAGCCTCTCTTCAAGCATAATGTTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGTGCTTGGGGAGGCCAAGGAATTTCCCGAGCCTCTCTTCAAGCATAA

Coding sequence (CDS)

ATGAGGCTGAGCGCCCATTTTTTACATAGTTCGCAAGACCTGTTCACCTACACCCAGTGCCAGGATTCCTGCATTGTTGGAGAGAGCTTGGGGAAGCCCGGAAAGTCCCTGGACCCTCGCTCAGGCATAACGTTCATCCCAGGGGTGCGTGCACTCTTCTGGGGCAAGGTACTTGGGGAGGCCAAGGAATTTCCCGAGCCTCTCTTCAAGCATAATGTTCATCCCAGGGGGGTGCGTACACTCTTCTGGGGAAAGGTGCTTGGGGAGGCCAAGGAATTTCCCGAGCCTCTCTTCAAGCATAATGTTCCTCCCAGGGGGGTGCGTACACTCTTCTGGGGAAAGGTGCTTGGGGAGGCCAAGGAATTTCCCGAGCCTCTCTTCAAGCATAATGCTCCTCCCAGGGGGGTGCGTACACTCTTCTGGGGAAAGGTGCTTGGGGAGGCCAAGGAATTTCCCGAGCCTCTCTTCAAGCATAATGTTCATCCCAGGGGGGTGCGTACACTCTTCTGGGGAAAGGTGCTTGGGGAGGCCAAGGAATTTCCCGAGCCTCTCTTCAAGCATAATGTTCATCCCAGGGGTGCGTACACTCTTCTGGGAAAGGTGCTTGGGGAGGCCAAGGAATTTCCCGAGCCTCTCTTCAAGCATAATGTTCCTCCCAGGGGGGTGCGTACACTCTTCTGGGGAAAGGTGCTTGGGGAGGCCAAGGAATTTCCCGAGCCTCTCTTCAAGCATAATGTTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGTGCTTGGGGAGGCCAAGGAATTTCCCGAGCCTCTCTTCAAGCATAA

Protein sequence

MRLSAHFLHSSQDLFTYTQCQDSCIVGESLGKPGKSLDPRSGITFIPGVRALFWGKVLGEAKEFPEPLFKHNVHPRGVRTLFWGKVLGEAKEFPEPLFKHNVPPRGVRTLFWGKVLGEAKEFPEPLFKHNAPPRGVRTLFWGKVLGEAKEFPEPLFKHNVHPRGVRTLFWGKVLGEAKEFPEPLFKHNVHPRGAYTLLGKVLGEAKEFPEPLFKHNVPPRGVRTLFWGKVLGEAKEFPEPLFKHNVHPRGAYTLLGKGAWGGQGISRASLQA

Homology

[Close]

BLAST of Lag0032303 vs. NCBI nr
Match: PPQ95726.1 (hypothetical protein CVT26_008369 [Gymnopilus dilepis])

HSP 1 Score: 62.8 bits (151), Expect = 5.4e-06
Identity = 69/217 (31.80%), Postives = 83/217 (38.25%), Query Frame = 0


Query: 59  GEAKEFPEPLFKHNVHPRGVRTLFWGKVLGEAKEFPEPLFKHNVPPRGVRTLFWGKVLGE 118
           G   +FPEP    N+ P   RT   G   G A  FPEP   + VP R           G 
Sbjct: 657 GAPSKFPEPTVP-NIVPG--RTPGSGPP-GAAALFPEPTVPNIVPGRPASR------AGG 716

Query: 119 AKEFPEPLFKHNAPPRGVRTLFWGKVLGEAKEFPEPLFKHNVHPRGVRTLFWGKVLGEAK 178
             +FPEP   +  P R   T   G     A  FPEP    N+ P   R+       G A 
Sbjct: 717 GAQFPEPSIPNIVPGRTPST---GASGAGAPLFPEPTVP-NIVPGHGRSPSGSVSAGGAS 776

Query: 179 EFPEPLFKHNVHPRGAYTLLGKVLGEAKEFPEPLFKHNVPPRG-------------VRTL 238
            FPEP    N+ P G  T  G   G   +FPEP   + VP R              V  +
Sbjct: 777 SFPEPTIP-NIVP-GRTTSQGS--GPGSQFPEPSIPNIVPGRSPSRAGGAAFPEPTVPNI 836

Query: 239 FW--GKV-LGEAKEFPEPLFKHNVHPRGAYTLLGKGA 260
               G V  G   +FPEP+  H V  +G     G GA
Sbjct: 837 VGRNGSVGSGPGAQFPEPVVPHIVPGKGTSRAGGGGA 855

[Close]

BLAST of Lag0032303 vs. ExPASy TrEMBL
Match: A0A409XY99 (Uncharacterized protein OS=Gymnopilus dilepis OX=231916 GN=CVT26_008369 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.6e-06
Identity = 69/217 (31.80%), Postives = 83/217 (38.25%), Query Frame = 0


Query: 59  GEAKEFPEPLFKHNVHPRGVRTLFWGKVLGEAKEFPEPLFKHNVPPRGVRTLFWGKVLGE 118
           G   +FPEP    N+ P   RT   G   G A  FPEP   + VP R           G 
Sbjct: 657 GAPSKFPEPTVP-NIVPG--RTPGSGPP-GAAALFPEPTVPNIVPGRPASR------AGG 716

Query: 119 AKEFPEPLFKHNAPPRGVRTLFWGKVLGEAKEFPEPLFKHNVHPRGVRTLFWGKVLGEAK 178
             +FPEP   +  P R   T   G     A  FPEP    N+ P   R+       G A 
Sbjct: 717 GAQFPEPSIPNIVPGRTPST---GASGAGAPLFPEPTVP-NIVPGHGRSPSGSVSAGGAS 776

Query: 179 EFPEPLFKHNVHPRGAYTLLGKVLGEAKEFPEPLFKHNVPPRG-------------VRTL 238
            FPEP    N+ P G  T  G   G   +FPEP   + VP R              V  +
Sbjct: 777 SFPEPTIP-NIVP-GRTTSQGS--GPGSQFPEPSIPNIVPGRSPSRAGGAAFPEPTVPNI 836

Query: 239 FW--GKV-LGEAKEFPEPLFKHNVHPRGAYTLLGKGA 260
               G V  G   +FPEP+  H V  +G     G GA
Sbjct: 837 VGRNGSVGSGPGAQFPEPVVPHIVPGKGTSRAGGGGA 855

The following BLAST results are available for this feature:

BLAST of Lag0032303 vs. NCBI nr


Match Name	E-value	Identity	Description
PPQ95726.1	5.4e-06	31.80	hypothetical protein CVT26_008369 [Gymnopilus dilepis]	[more]

BLAST of Lag0032303 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0032303 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A409XY99	2.6e-06	31.80	Uncharacterized protein OS=Gymnopilus dilepis OX=231916 GN=CVT26_008369 PE=4 SV=...	[more]

BLAST of Lag0032303 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0032303.1	Lag0032303.1	mRNA