Lag0032138 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0032138
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr11: 25849136 .. 25851000 (-)
RNA-Seq Expression	Lag0032138
Synteny	Lag0032138

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGATCGAACCGAGTTCGGTTCCCTTCTTTGCCCAAAACCACACGTGTTTAAAAAAAACGTTAACTTTTGCTTTTTTCGAAGTCGAGGGGTTTCAGAGCATTTTGAAAAGACTAAATGGTAAGGGAAAACGCGAGGAAAACGGGGGTTTCAAATCTGCCTCGTCGAAGTTGCCGCCTGATTTAGGGTTTTTGCCGATATCACCGCCGCCTCGTCGTCTCGTGGGTTTTCGCCGAAGTCACCGCCTCCTTAAAGCTCTGTAAGTCGCCGCTTCGCCGTCGCCTCGTCGTCTCGTGGGTTTTCGCCGAAGTCGCTGCCGCCTTGAAGCTCTGTTAGTCGCTGTTGCAGAAAGAAGCAGAAAGAAGAAGAAGAAGAAAGAAGAAGAAGAAGAAAGAAACCACAGCCACAACCACACCGCAGTAGTCTTCGTCTTCTTCCAAGCTCGTGGTAACTTTTTTTTTTGTTTCATAGGACACAGATCTGAGTTAAAAGCACAGAGAGAGAAAGAGAAGATGATAAATTTGATGTTTGTCTCGAAATCTTCGCTTTATTTATTTAGTTATTTTATTATTATTATTATTATTATTTTAATTTTTTAGCTACAAACTTTCCTATTTATAACTTCACCACATGACAGCAGTCTTCCAAGCCTCATCTGCAGAAAGAAGAAGAAAAGAAACCGACCTGACCTGAATCGGTTCGGGTCGGGTCGGTTTGTTCGTACAACTGACCCGACCCGACATACTTACACCCCTAGTTAAAATCACTTTTGTCATATTCAAAATCACTCCGAAACATGACTTTAATAATTTAAAATCAATTTCGATGATATGAAAATCAAGTTTAAAAGTGTAAAATCAAACATTAAATTGATTTTGAATAATTAAAAGTACGTTTCAGGGTGATTTCGAACATAACGAAAGTGATTTCGTCTTTTAAAAATCACTCCCACTTTATTGAATCCAAGCACTTTTAGAGGCTCCCAACATTACTCTTCTAAATTCCACCTATCCCTCATCTTCCTAATACCGTCTTTTTATCACTAGTCCACCCCTTGTAGTTACCATTATGCCACTCCTACCAAAGCCACACACTAATACTAACAAATTATAGAAGTTCTAAGAAATCAGACCGTCTAGAGTACAGAAGGGTGAAAATAATCCTATACCTTGGGGTTTCTTGGAACAAAGTTTATTATATTTGATATGAGTTACGAAAACATATGCTATAGCTGTCCTTAACAATTTGCAAATTGAACACAACTCCCTTAAGGAGACTTCTATTAAAAGAAATTGCTGCAGAACATTTATTGTAGTTTTGCTCCTTTTGGGTGGTGGTGTTTTTTAAACTTTTTCTTTGGATTGTGCTTTCTGGTCCATATGGACTTTTTTCTTTGGATTGGATTAGTCTTTTGTGTGTTTTTAGTGGTTGGTTATCTTATCAACTAGTTCTTTTTTTTCCTCCTTCCACAGAGCTAACCCTGACTGCTTTACTTTTCATTTTTGTTCGTTGTTTTGTTTGTATGCGTTATTGAATGAAGGTAATATAATCTTTTTGTTTCTGTAAATCTTGTTATTACTGATTAGCACAACTTTTTCCAGGTTGAGCTTTGTGGTCATGCAACATTAGCGGCTGCACACACACACTGTTCTCATCTGGTTTAGTAAATTCAAATATTATTGAGTTTTGCACGCTTTCTAAAAGGTTCCAGAGATCAAGGCAACTGGGGTTTCAAATGTTCATAACGGTGAAGCATCGCGAGAGTTACTTTATTGAATTAAATTTCCCTGCAATCCCATCGGTTGAAGTCAATTCTGCTGATGTTTCTTCAATCTCCAAAGCGTTGAATGTTGCTCCTATATGA

mRNA sequence

ATGTTGATCGAACCGAGTTCGGTTCCCTTCTTTGCCCAAAACCACACGTGTTTAAAAAAAACGTTAACTTTTGCTTTTTTCGAAGTCGAGGGGTTTCAGAGCATTTTGAAAAGACTAAATGGTAAGGGAAAACGCGAGGAAAACGGGGGTTTCAAATCTGCCTCGTCGAAGTTGCCGCCTGATTTAGGGTTTTTGCCGATATCACCGCCGCCTCGTCGTCTCGTGGGTTTTCGCCGAAGTCACCGCCTCCTTAAAGCTCTAAAGAAGCAGAAAGAAGAAGAAGAAGAAAGAAGAAGAAGAAGAAAGAAACCACAGCCACAACCACACCGCAGTAGTCTTCGTCTTCTTCCAAGCTCGTGGTTCCAGAGATCAAGGCAACTGGGGTTTCAAATGTTCATAACGGTGAAGCATCGCGAGAGTTACTTTATTGAATTAAATTTCCCTGCAATCCCATCGGTTGAAGTCAATTCTGCTGATGTTTCTTCAATCTCCAAAGCGTTGAATGTTGCTCCTATATGA

Coding sequence (CDS)

ATGTTGATCGAACCGAGTTCGGTTCCCTTCTTTGCCCAAAACCACACGTGTTTAAAAAAAACGTTAACTTTTGCTTTTTTCGAAGTCGAGGGGTTTCAGAGCATTTTGAAAAGACTAAATGGTAAGGGAAAACGCGAGGAAAACGGGGGTTTCAAATCTGCCTCGTCGAAGTTGCCGCCTGATTTAGGGTTTTTGCCGATATCACCGCCGCCTCGTCGTCTCGTGGGTTTTCGCCGAAGTCACCGCCTCCTTAAAGCTCTAAAGAAGCAGAAAGAAGAAGAAGAAGAAAGAAGAAGAAGAAGAAAGAAACCACAGCCACAACCACACCGCAGTAGTCTTCGTCTTCTTCCAAGCTCGTGGTTCCAGAGATCAAGGCAACTGGGGTTTCAAATGTTCATAACGGTGAAGCATCGCGAGAGTTACTTTATTGAATTAAATTTCCCTGCAATCCCATCGGTTGAAGTCAATTCTGCTGATGTTTCTTCAATCTCCAAAGCGTTGAATGTTGCTCCTATATGA

Protein sequence

MLIEPSSVPFFAQNHTCLKKTLTFAFFEVEGFQSILKRLNGKGKREENGGFKSASSKLPPDLGFLPISPPPRRLVGFRRSHRLLKALKKQKEEEEERRRRRKKPQPQPHRSSLRLLPSSWFQRSRQLGFQMFITVKHRESYFIELNFPAIPSVEVNSADVSSISKALNVAPI

Homology

[Close]

BLAST of Lag0032138 vs. NCBI nr
Match: KAG7014431.1 (hypothetical protein SDJN02_24608, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 54.7 bits (130), Expect = 9.2e-04
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 139 ESYFIELNFPAIPSVEVNSADVSSISKALNVA 171
           ESYFIEL+FPAI S+EV+SADVSS+SKALNVA
Sbjct: 139 ESYFIELDFPAISSIEVDSADVSSVSKALNVA 170

[Close]

BLAST of Lag0032138 vs. NCBI nr
Match: XP_022150188.1 (uncharacterized protein LOC111018421 isoform X2 [Momordica charantia])

HSP 1 Score: 54.7 bits (130), Expect = 9.2e-04
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 138 RESYFIELNFPAIPSVEVNSADVSSISKALNVAPI 173
           +ESY IEL+FPAI S EVNSADVSSISKALNVA I
Sbjct: 316 QESYLIELDFPAISSAEVNSADVSSISKALNVASI 350

[Close]

BLAST of Lag0032138 vs. NCBI nr
Match: XP_022992538.1 (uncharacterized protein LOC111488833 [Cucurbita maxima])

HSP 1 Score: 54.7 bits (130), Expect = 9.2e-04
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 139 ESYFIELNFPAIPSVEVNSADVSSISKALNVA 171
           ESYFIEL+FPAI S+EV+SADVSS+SKALNVA
Sbjct: 139 ESYFIELDFPAISSIEVDSADVSSVSKALNVA 170

[Close]

BLAST of Lag0032138 vs. NCBI nr
Match: XP_023548226.1 (uncharacterized protein LOC111806929 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 54.7 bits (130), Expect = 9.2e-04
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 139 ESYFIELNFPAIPSVEVNSADVSSISKALNVA 171
           ESYFIEL+FPAI S+EV+SADVSS+SKALNVA
Sbjct: 139 ESYFIELDFPAISSIEVDSADVSSVSKALNVA 170

[Close]

BLAST of Lag0032138 vs. NCBI nr
Match: KAG6575897.1 (hypothetical protein SDJN03_26536, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 54.7 bits (130), Expect = 9.2e-04
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 139 ESYFIELNFPAIPSVEVNSADVSSISKALNVA 171
           ESYFIEL+FPAI S+EV+SADVSS+SKALNVA
Sbjct: 397 ESYFIELDFPAISSIEVDSADVSSVSKALNVA 428

The following BLAST results are available for this feature:

BLAST of Lag0032138 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014431.1	9.2e-04	84.38	hypothetical protein SDJN02_24608, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022150188.1	9.2e-04	82.86	uncharacterized protein LOC111018421 isoform X2 [Momordica charantia]	[more]
XP_022992538.1	9.2e-04	84.38	uncharacterized protein LOC111488833 [Cucurbita maxima]	[more]
XP_023548226.1	9.2e-04	84.38	uncharacterized protein LOC111806929 [Cucurbita pepo subsp. pepo]	[more]
KAG6575897.1	9.2e-04	84.38	hypothetical protein SDJN03_26536, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lag0032138 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 77..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0032138.1	Lag0032138.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009058	biosynthetic process
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0003676	nucleic acid binding