Lag0032117 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0032117
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotransposon gag protein
Location	chr11: 25197043 .. 25201317 (-)
RNA-Seq Expression	Lag0032117
Synteny	Lag0032117

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTAGCATCCTGTCACGTATGAAGAGGAATTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTGAAGCCAAATCTCATTATCTTGACCAATCCTGCAAATGAAGGATCTGATCAAGACCATGACAAAGATAAGAGCTTTTAAATGTAAAAGCTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACATGAACTTAAAAGGTGAGAGCAAAAAAAATTCTTGAACTACGTTATGACTTGATCCCTATTCCATAAGGGTACGTAGGCAGCTTAAAGAAAACTTTAAGTTCAGTCTCTATAAACAAAAAAAAAAGGTTCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTATCCTGCTGCGTTGTTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGTGAAGGATCTTATGTGGTGCGTTGTTGCATTGTTCCCTCTTCTCTCAAGTTCGATGGTTCTCACGCAGCTTTGCTGGAGTTTCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTCCGTTGCAGTTCCTTCTTTCAAGGTCGAAGGTTCTCACTCGCTGCGTTACAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGTTTCGCTCTGCAATTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGTAGTTCCTTCCCCCAAGTTTGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCAAAGGTTCTCACGCGCTTCGTGAAGTTCCTTCCTCCAGTTCAAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCCTTCGCGCTGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACTCGCTTCGCTGCAGTTCCTTCCTCCAAATTCGAAGGTTTCGAAGGTTCTCAGCGCTGTGATTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGTTGCTCCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGTTCTCTCCACTGTTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACTACTCCTTCTCCAAGTTCGATGGCGTTCTCTCCGCTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGATCCTTTTCAAATGTTTGGCGGCGGTTGACGTCCTCGTTCCGCTTCATCTTCAAATGTTGGCAGTTGACGGCGTTAGCTTCGCTTCATCTTCAAAAATTGACTGTTGATAACTTCACTTCATATTCAAAAGTTGACAGTTGAAGTCTTCGCTACATCTGCAAAGATGAACAACTTTAGTGTTGCCTTTATCTTGAAAGTGTCCAGACTGGAAGATGCATCTTAGCTGCAAGTTAAAAAAATGCTTGATATCAAACCACAAAAAAAAAAAAGAAAGAAAGACAATAAAAGTGTTGTTAAAAAAACGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAAAGCTGATGACAACCGTGTGACACCCTGCAGAACTACAGTCATCAAGTGACTGGTCTAGACAGGTGGTGAATCACTGCAAGTGAACTGATGACGACCTGGTGACCACCCCTGCAGGAACTCAGTCATCAAAGTGACTGGTCTAGACAGGGTGAATCATGCAGAGCTGATACATGGTGACACCCCTGCAGGACTACAGTCATCAAAGTGACTGGTCTAGCAGGGTGATCACTGCAAGTGGCTGATGCGATCTGGTGACACCCCTGCAGGACTACAGTCATCAAAGTGACTGGTCTAGCAGGTGGTGAATCACTGCAAGGAATTGGTGACGACTGTTGCACGAAGCTTACACATTCAAGGAAGAAAGAAACAAATTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAACGAAAATAAAAAAAAAAAAAAAAAGAAAGAAAGTTTCTACTTGGATCCCTTCTTGAATGCTCTCTGCAATTGAGTGTGCTCTCCCTACTGAGGTTCAACCTTATTTATAGAATGGAAGGTTGGATTCAAATAGATAAATCTTATCTCCAACGATAATCTTTATCAATTTTGGGATGAGTTCAAATATATATCTTATCTCCAACGACAATCTTCATCAATTTTGGATGTTCAAATATAAATCTTATCTCCAACGGAAATCTTCATCAATTTTGAAGGGTTCGAATATAAATCTTATCTCCAACGAGAGTCTTTGGTTCAAATTTTAACCCAAAGATATGAGATTTGATTTAAATCAAATTGGGAAATAAATTTTATTCCAAATTCCACCAAATTTTGGGATGCAGCCTTAAATTTACTTAAATTAAATTTTGGGCATAATCCAAATTTTATCCCAAATGAACCAAAGTCAAAACCTCAAATTCTATTCCAAATGCGAGTTAAAATTGGGTAGGATTTTACCTCAAATCAAAATTTGGGTATAAACCAAATTTTGCCCAAACTTGAAATCAAAGTTTGCTGCCAAATAAAAAAAAATCAAAATTTTGACCAAAATTCATATTTTGATTAAATTGACGCACCAAATGGAGTCAAAGTCAAGAACAAATACCTTGCATTTTAATTCCAAAATATATTTTTCGAGATTCACTCACACATAACTTGTGCCTAAATCTCGAAAAGGGGGCATTTGTTGAAGGAGAAATTTCGGCCAATCACAAGTTGCCACGTCATTAATATAAATTAATGATAAAATAAATTTGGGACCAGTTACACATTTACACGTGTGCCTAAATTAAATTAATAGACATTAAAATTCGGCAAATCAAAGAATGCCACTTGTCTATTAGTGATCCATCAGATAACATCAGCCAAGTTCAATCAGATTATGCCACGTGGCAATTGGACCCAAGCCCAAGCCCATATGAGGTCCATCAAACTCTATAAATAGAGGAGGCCACCATTCATTTGGGGGATTCAGATTTGGAGACAGAGTCAGAGAACTCAGAGTCCAGAGCATTCTGCCAAGAGTCCAGAGTCGGCAGGTCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACAGATCATCAAGCCAACAGGCCGATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACAGATCATCAAGCCAACAGGCTGATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGCCGATCATCAGGAAGATCAACAAGCCAACAAGCCGATCCAAGAGATCATCACGCCAACAGGCCGATCATCCAAGAAGATCAACAAGCCAATAGGTCGATCCAGGAGATCATCAACCTAACAGGCCGATCATCCAAGAAGATCAATAAGTCCAATAGGTCGATCCAGGAGATCATCAACCTAACAGACCAATCATCCAAGAAGATCAACAAGCCAATAAGCCGATCCAAGAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAACCTAGCAAGTTGATCATCTAA

mRNA sequence

ATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTAGCATCCTGTCACGTTCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTATCCTGCTGCGTTGTTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGTGAAGGATCTTATGTGGTGCGTTGTTGCATTGTTCCCTCTTCTCTCAAGTTCGATGGTTCTCACGCAGCTTTGCTGGAGTTTCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTCCGTTGCAGTTCCTTCTTTCAAGGTCGAAGGTTCTCACTCGCTGCGTTACAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGTTTCGCTCTGCAATTCCTTCCCCCAAGTTCGAAGTTCCTTCCTCCAGTTCAAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCCTTCGCGCTGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACTCGCTTCGCTGCAGTTCCTTCCTCCAAATTCGAAGGTTTCGAAGGTTCTCAGCGCTGTGATTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGTTGCTCCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGTTCTCTCCACTGTTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACTACTCCTTCTCCAAGTTCGATGGCGTTCTCTCCGCTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCTTTTGAAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGAACTCAGTCATCAAAGTGACTGGTCTAGACAGGGTGAATCATGCAGAGCTGATACATGGTGACACCCCTGCAGGACTACAGTCATCAAAATTTGGAGACAGAGTCAGAGAACTCAGAGTCCAGAGCATTCTGCCAAGAGTCCAGAGTCGGCAGGTCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACAGATCATCAAGCCAACAGGCCGATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACAGATCATCAAGCCAACAGGCTGATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGCCGATCATCAGGAAGATCAACAAGCCAACAAGCCGATCCAAGAGATCATCACGCCAACAGGCCGATCATCCAAGAAGATCAACAAGCCAATAGGTCGATCCAGGAGATCATCAACCTAACAGGCCGATCATCCAAGAAGATCAATAAGTCCAATAGGTCGATCCAGGAGATCATCAACCTAACAGACCAATCATCCAAGAAGATCAACAAGCCAATAAGCCGATCCAAGAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAACCTAGCAAGTTGATCATCTAA

Coding sequence (CDS)

ATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTAGCATCCTGTCACGTTCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTATCCTGCTGCGTTGTTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGTGAAGGATCTTATGTGGTGCGTTGTTGCATTGTTCCCTCTTCTCTCAAGTTCGATGGTTCTCACGCAGCTTTGCTGGAGTTTCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTCCGTTGCAGTTCCTTCTTTCAAGGTCGAAGGTTCTCACTCGCTGCGTTACAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGTTTCGCTCTGCAATTCCTTCCCCCAAGTTCGAAGTTCCTTCCTCCAGTTCAAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCCTTCGCGCTGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACTCGCTTCGCTGCAGTTCCTTCCTCCAAATTCGAAGGTTTCGAAGGTTCTCAGCGCTGTGATTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGTTGCTCCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGTTCTCTCCACTGTTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACTACTCCTTCTCCAAGTTCGATGGCGTTCTCTCCGCTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCTTTTGAAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGAACTCAGTCATCAAAGTGACTGGTCTAGACAGGGTGAATCATGCAGAGCTGATACATGGTGACACCCCTGCAGGACTACAGTCATCAAAATTTGGAGACAGAGTCAGAGAACTCAGAGTCCAGAGCATTCTGCCAAGAGTCCAGAGTCGGCAGGTCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACAGATCATCAAGCCAACAGGCCGATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACAGATCATCAAGCCAACAGGCTGATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGCCGATCATCAGGAAGATCAACAAGCCAACAAGCCGATCCAAGAGATCATCACGCCAACAGGCCGATCATCCAAGAAGATCAACAAGCCAATAGGTCGATCCAGGAGATCATCAACCTAACAGGCCGATCATCCAAGAAGATCAATAAGTCCAATAGGTCGATCCAGGAGATCATCAACCTAACAGACCAATCATCCAAGAAGATCAACAAGCCAATAAGCCGATCCAAGAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAACCTAGCAAGTTGATCATCTAA

Protein sequence

MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRSSLQFLLSKFEGPYTVRYCVVPSPSSKVLRCILLRCSFSKFEGSQLYDCYVVPPPSVKDLMWCVVALFPLLSSSMVLTQLCWSFFSPSSKVLTRSVAVPSFKVEGSHSLRYSSFSPSSKVHALRCSSFSQIRRFSRVSLCNSFPQVRSSFLQFKGSHALRCSSFPQVEGSHVASLQFLPPSLKVLTSLPSRCASLQFLPPSSKVLTRFAAVPSSKFEGFEGSQRCDSLQFLPPSSKVLMRFVAPSSKFEGSLTRCCSSFLQVRRFPHALRSLLLQVRRRSLHCSFSKFEGASLHYSFSKFDGVLSAAPSPSSKALLSTAPSPSSKALLSTAPSPSSKVLLSTPLLKETTVIKVTGLDRNSVIKVTGLDRVNHAELIHGDTPAGLQSSKFGDRVRELRVQSILPRVQSRQVRSSKRINKLTSRSNRSSSQQADPRDQQANRPIKKINKSAGRSSKRINKLTSRSNRSSSQQADPRDQQANRPIKKINKSAGRSSKRSTSQPTDQEDQQVSSRSSGRSTSQQADPRDHHANRPIIQEDQQANRSIQEIINLTGRSSKKINKSNRSIQEIINLTDQSSKKINKPISRSKRSSSQQADPRDHQPSKLII

Homology

[Close]

BLAST of Lag0032117 vs. NCBI nr
Match: KAA0036008.1 (Retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 1.0e-13
Identity = 55/106 (51.89%), Postives = 70/106 (66.04%), Query Frame = 0


Query: 1   MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  EEENQC MST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M + + 
Sbjct: 92  LSMATKEEENQCPMSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSFKA 151

Query: 61  KLFDEVNSDKKLHSSILSRSSLQFLLS-KFEGPYTV--RYCVVPSP 104
           K F E N D K+HS + SR   +  +    EG  TV  R+ +  +P
Sbjct: 152 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLTVKPRFIIFTNP 197

[Close]

BLAST of Lag0032117 vs. NCBI nr
Match: KAA0044978.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 1.8e-13
Identity = 55/106 (51.89%), Postives = 70/106 (66.04%), Query Frame = 0


Query: 1   MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ 
Sbjct: 151 LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 210

Query: 61  KLFDEVNSDKKLHSSILSRSSLQFLLS-KFEGPYTV--RYCVVPSP 104
           K F E N D K+HS + SR   +  +    EG  TV  R+ +  +P
Sbjct: 211 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLTVKPRFIIFTNP 256

[Close]

BLAST of Lag0032117 vs. NCBI nr
Match: KAA0050734.1 (gag protease polyprotein [Cucumis melo var. makuwa] >TYJ95698.1 gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 1.8e-13
Identity = 55/106 (51.89%), Postives = 70/106 (66.04%), Query Frame = 0


Query: 1   MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ 
Sbjct: 92  LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 151

Query: 61  KLFDEVNSDKKLHSSILSRSSLQFLLS-KFEGPYTV--RYCVVPSP 104
           K F E N D K+HS + SR   +  +    EG  TV  R+ +  +P
Sbjct: 152 KPFHEENGDDKIHSRVPSRMKRKLSVDINTEGSLTVKPRFIIFTNP 197

[Close]

BLAST of Lag0032117 vs. NCBI nr
Match: KAA0050736.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYJ95700.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 2.3e-13
Identity = 55/106 (51.89%), Postives = 71/106 (66.98%), Query Frame = 0


Query: 1   MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  EEENQC MST TR SAF+RLS+S SKK R STS FDRLK+TNDQ +R+M +L+ 
Sbjct: 402 LSMATKEEENQCPMSTYTRTSAFKRLSISRSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 461

Query: 61  KLFDEVNSDKKLHSSILSRSSLQFLLS-KFEGPYTV--RYCVVPSP 104
           K F E N D K++S + SR   +  +    EG  TV  R+ +  +P
Sbjct: 462 KPFHEENDDDKIYSRVPSRIKRKLSIDINTEGSLTVKPRFIIFTNP 507

[Close]

BLAST of Lag0032117 vs. NCBI nr
Match: KAA0065984.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK28929.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 87.8 bits (216), Expect = 3.9e-13
Identity = 56/105 (53.33%), Postives = 69/105 (65.71%), Query Frame = 0


Query: 1   MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  EEENQC  ST TR SAF+RLS+STSKK R STS FDRLK+ NDQ +R+M +L+ 
Sbjct: 313 LSMATKEEENQCPTSTYTRTSAFKRLSISTSKKHRPSTSAFDRLKMKNDQQQREMKSLKA 372

Query: 61  KLFDEVNSDKKLHSSILSRSSLQFLLSKFEGPYTV--RYCVVPSP 104
           K F E N D K+HS I SR     +    EG  TV  R+ +  +P
Sbjct: 373 KPFHEENDDDKIHSHIPSRKLSVDI--NIEGSLTVKPRFIIFTNP 415

[Close]

BLAST of Lag0032117 vs. ExPASy TrEMBL
Match: A0A5A7SZJ7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold18735G00010 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 5.0e-14
Identity = 55/106 (51.89%), Postives = 70/106 (66.04%), Query Frame = 0


Query: 1   MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  EEENQC MST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M + + 
Sbjct: 92  LSMATKEEENQCPMSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSFKA 151

Query: 61  KLFDEVNSDKKLHSSILSRSSLQFLLS-KFEGPYTV--RYCVVPSP 104
           K F E N D K+HS + SR   +  +    EG  TV  R+ +  +P
Sbjct: 152 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLTVKPRFIIFTNP 197

[Close]

BLAST of Lag0032117 vs. ExPASy TrEMBL
Match: A0A5D3BBF9 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00250 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 8.5e-14
Identity = 55/106 (51.89%), Postives = 70/106 (66.04%), Query Frame = 0


Query: 1   MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ 
Sbjct: 92  LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 151

Query: 61  KLFDEVNSDKKLHSSILSRSSLQFLLS-KFEGPYTV--RYCVVPSP 104
           K F E N D K+HS + SR   +  +    EG  TV  R+ +  +P
Sbjct: 152 KPFHEENGDDKIHSRVPSRMKRKLSVDINTEGSLTVKPRFIIFTNP 197

[Close]

BLAST of Lag0032117 vs. ExPASy TrEMBL
Match: A0A5A7TQ06 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002860 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 8.5e-14
Identity = 55/106 (51.89%), Postives = 70/106 (66.04%), Query Frame = 0


Query: 1   MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ 
Sbjct: 151 LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 210

Query: 61  KLFDEVNSDKKLHSSILSRSSLQFLLS-KFEGPYTV--RYCVVPSP 104
           K F E N D K+HS + SR   +  +    EG  TV  R+ +  +P
Sbjct: 211 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLTVKPRFIIFTNP 256

[Close]

BLAST of Lag0032117 vs. ExPASy TrEMBL
Match: A0A5A7U974 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00280 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.1e-13
Identity = 55/106 (51.89%), Postives = 71/106 (66.98%), Query Frame = 0


Query: 1   MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  EEENQC MST TR SAF+RLS+S SKK R STS FDRLK+TNDQ +R+M +L+ 
Sbjct: 402 LSMATKEEENQCPMSTYTRTSAFKRLSISRSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 461

Query: 61  KLFDEVNSDKKLHSSILSRSSLQFLLS-KFEGPYTV--RYCVVPSP 104
           K F E N D K++S + SR   +  +    EG  TV  R+ +  +P
Sbjct: 462 KPFHEENDDDKIYSRVPSRIKRKLSIDINTEGSLTVKPRFIIFTNP 507

[Close]

BLAST of Lag0032117 vs. ExPASy TrEMBL
Match: A0A5A7VFA5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G00130 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.9e-13
Identity = 56/105 (53.33%), Postives = 69/105 (65.71%), Query Frame = 0


Query: 1   MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLEL 60
           +SMA  EEENQC  ST TR SAF+RLS+STSKK R STS FDRLK+ NDQ +R+M +L+ 
Sbjct: 313 LSMATKEEENQCPTSTYTRTSAFKRLSISTSKKHRPSTSAFDRLKMKNDQQQREMKSLKA 372

Query: 61  KLFDEVNSDKKLHSSILSRSSLQFLLSKFEGPYTV--RYCVVPSP 104
           K F E N D K+HS I SR     +    EG  TV  R+ +  +P
Sbjct: 373 KPFHEENDDDKIHSHIPSRKLSVDI--NIEGSLTVKPRFIIFTNP 415

The following BLAST results are available for this feature:

BLAST of Lag0032117 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036008.1	1.0e-13	51.89	Retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0044978.1	1.8e-13	51.89	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0050734.1	1.8e-13	51.89	gag protease polyprotein [Cucumis melo var. makuwa] >TYJ95698.1 gag protease pol...	[more]
KAA0050736.1	2.3e-13	51.89	retrotransposon gag protein [Cucumis melo var. makuwa] >TYJ95700.1 retrotranspos...	[more]
KAA0065984.1	3.9e-13	53.33	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK28929.1 ty3-gyp...	[more]

BLAST of Lag0032117 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0032117 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SZJ7	5.0e-14	51.89	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3BBF9	8.5e-14	51.89	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7TQ06	8.5e-14	51.89	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5A7U974	1.1e-13	51.89	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7VFA5	1.9e-13	53.33	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Lag0032117 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 485..515
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 570..598
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 647..676
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 485..619
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 531..555
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 647..684

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0032117.1	Lag0032117.1	mRNA