Lag0032098 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0032098
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr11: 24567127 .. 24569479 (+)
RNA-Seq ExpressionLag0032098
SyntenyLag0032098
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGAAAGGAATCATATTCGTTCAAGAGCTTGAAGACTACAATTACGACGGTGATGAAGGCGAAATCGGCAGTGAATTGAAGGTGTGGGGGATTGTAGTACAGGGAAAACGCGTTGATCGTGGTGCGCCGGTTTGTTACCTGTTGACGACAAGTAGTACGGCAGAGCTAGGGTTGTGGTGCTTGCACTTCTGTCTGGTAGGGTTAAGAATTTCAGAGAGACGACGGGAGGGAGGGAGGGACCTCCCTCCTTCGATTCTCGCTAGAAAATTGAAGGAGAGAGGATTTTCCGGCAAGCTTTTTTTTAAAAAAAAAGAATGATGTGAAAATGAGAAAAAGAAGAAAAGATTAGGGAAGAAGGAAGAAAAAAAAGTCGTCGTCAGTGAGCGGTGGACGCCGGCGACCTACTGAAGAAGAAAGGAAGAAGAAAAGGTTGAAGATGAGAAGAAAATAAGGAGAAGGTTGAAGAAGAAGAAGAATAAGAGAGAGAAATAGAAAAAATAAACAATAATAATAAAATAATAATATTTTATTACTTCAATATTTTTTATTTTAAAAAAAATTATTAAAATAATAGTGCCACATCAGCAACTGTTAAGATTTAATAGAAAAATTGATGGCAAGGACCAAAATGCTTCTTATCTCAAACCTCAGGGGTATTTTTGTTGAGTTTGAAAACTCAGGGACCAAACTGTCACTCAACCCAAACCTCAGGGACCAAAAGTGTATTTTTCCCAATAATCATTAAATACAATGCTTCGGGACATAAATCCCAACAATCATGACTTCAGACAAAATCCCAAAAACCAAGTCCATGAGAAATAGATCAAAAGGTGTTGAAGGGTGTGTTTGGGCCCTCATTTTTTGAAGCCCAGGTTTTCGAAAAAAGGAAGTTGGTGTTTGGGCCTCAGGTTTGGGAAAACACCTGTTTAGGGTTTCCCAAACCCTCGCTTTTGTTGCCCTACACGCCGCTCTCTGATGCCCCTCTTTCGGTAACACGCTTCCTCTCTCTCTCTGGTTTCCTTCGCTTGTCTGCTTTTTTCTCTCAACCGAAGCTTTGTATGCTGATTTTTTGCTTCGTTCTTCACATATTCTTGCTCTCTCTCCTTCTCTTCTACTTTGGGTTGTCGGATCTGAAGGTGGAGGTGAGTTTTTTCCTTATTTTTGTGATCTGTTTTCTACTTGAAAGCGTTAAACGCGACTGAGATTTGTGTTCTTCCTTCATCTTTTCTTCGGATCTGAACTTCCTACTCTGGTTCCGTGATGTCTTGGGGTCTTGGATCGAATGCATGTGTTCTTCGGTTTCAGAGGGACGTTTGGAACAGATCTTTGATCTTATCTCAGATTTGTCTTCGCCTCGCTCCGTCTTCATCAATCTCAGGTAGAACTTTTTTTCTTTGCGTCCCTTGTTTTTTATTTAAGACTCTCGGATCTAACCTTCTCTGATCTAACCTTCGGTTTTTTTTTTCTTTTTTACAGAACTCACTTCAGCTTGTCGTTGGTGTTGGTGATAGCAATCAGGATCCGCATGGTAGATTGGAGCACGGTGAGGGGTGGGACGAAGGTAAGGGGTAACCAGCCGATGATGCTCGTGAAAATTAAATAAGCAACCTTTCCCATTTTTTTTCTACTTTTGGGAAGTAAATTTCTCTAATTCTTTCTTCCTCTATTTTTTTTTTTTAGTTTTCTATCTTTCTTACGATTTTGATCTGTCTTCTTCTTCTATTTTTCTCATGCTCTAATTTACCGTTTCTGAATTTCTTTTTGTATACCTTTTTTTTCTATCTTCGTTACGATTGTGGTTGTTCTTTTTGTCTTCCTCATGTTCTGACCTTACCGTTTCCTATGGATTATGTGCTTTTTTTTCGCACATACGCATTGATAAGTTATTTTGAGTTCATGTTTCCTCTCATGACCCCCCTTCGTTTAGTTCATACTGTCTGTTGCTTGTCATGCCCCCCGCTTTGTATTATGTGTTGTTCATGCAAGGATTAAAGCCCTAGCGTAACAGAAACAATCAGACCATTAACTCAGAATTTAATTTGGATTAAAATACCATACGTTGGCAATACAATCACAACAGTAAAATCAAAATTAAACTACTGAATAGGTTATAATACACATGCTGATAATAAAACAAAAAACCTTAGATCTAATCTACAAGAAGATCTGAATGATCTAAGGTTAAGTGTAACTTACTACCGTGGATGATCTTGACAGAATTTAGCCAAATTCCCTTGATTTTTCACCAAAACCAGCCGCAAAACTGCTTCTTTACTTGTTGGAAAAATCTCACGAACACCACCAAAAAGGTTGCACTGGTATCCTCTTGAAGGATATTGCGTTGGGCTAG

mRNA sequence

ATGCCGAAAGGAATCATATTCGTTCAAGAGCTTGAAGACTACAATTACGACGGTGATGAAGGCGAAATCGGCAGTGAATTGAAGGTGTGGGGGATTGTAGTACAGGGAAAACGCGTTGATCGTGGTGCGCCGGTTTGTTACCTGTTGACGACAAGTAGTACGGCAGAGCTAGGGTTGTGGTGCTTGCACTTCTGTCTGGTTTGGGAAAACACCTGTTTAGGGTTTCCCAAACCCTCGCTTTTGTTGCCCTACACGCCGCTCTCTGATGCCCCTCTTTCGAACTCACTTCAGCTTGTCGTTGGTGTTGGTGATAGCAATCAGGATCCGCATGGTAGATTGGAGCACGGTGAGGGGTGGGACGAAGCCGCAAAACTGCTTCTTTACTTGTTGGAAAAATCTCACGAACACCACCAAAAAGGTTGCACTGGTATCCTCTTGAAGGATATTGCGTTGGGCTAG

Coding sequence (CDS)

ATGCCGAAAGGAATCATATTCGTTCAAGAGCTTGAAGACTACAATTACGACGGTGATGAAGGCGAAATCGGCAGTGAATTGAAGGTGTGGGGGATTGTAGTACAGGGAAAACGCGTTGATCGTGGTGCGCCGGTTTGTTACCTGTTGACGACAAGTAGTACGGCAGAGCTAGGGTTGTGGTGCTTGCACTTCTGTCTGGTTTGGGAAAACACCTGTTTAGGGTTTCCCAAACCCTCGCTTTTGTTGCCCTACACGCCGCTCTCTGATGCCCCTCTTTCGAACTCACTTCAGCTTGTCGTTGGTGTTGGTGATAGCAATCAGGATCCGCATGGTAGATTGGAGCACGGTGAGGGGTGGGACGAAGCCGCAAAACTGCTTCTTTACTTGTTGGAAAAATCTCACGAACACCACCAAAAAGGTTGCACTGGTATCCTCTTGAAGGATATTGCGTTGGGCTAG

Protein sequence

MPKGIIFVQELEDYNYDGDEGEIGSELKVWGIVVQGKRVDRGAPVCYLLTTSSTAELGLWCLHFCLVWENTCLGFPKPSLLLPYTPLSDAPLSNSLQLVVGVGDSNQDPHGRLEHGEGWDEAAKLLLYLLEKSHEHHQKGCTGILLKDIALG
Homology
[Close]
BLAST of Lag0032098 vs. NCBI nr
Match: XP_022133523.1 (uncharacterized protein LOC111006084 [Momordica charantia])

HSP 1 Score: 98.2 bits (243), Expect = 6.4e-17
Identity = 46/74 (62.16%), Postives = 53/74 (71.62%), Query Frame = 0 

Query: 1   MPKGIIFVQELEDYNYD-------GDEGEIGSELKVWGIVVQGKRVDRGAPVCYLLTTSS 60
           MP+GI+FVQELED +YD       G+   I  E K WGIV+QG+ V+RG PVCYLL TSS
Sbjct: 137 MPEGILFVQELEDDDYDEDADGGGGNGSNIAGESKAWGIVIQGRGVERGGPVCYLLKTSS 196

Query: 61  TAELGLWCLHFCLV 68
            A LGLWC HFCLV
Sbjct: 197 AAGLGLWCTHFCLV 210

[Close]
BLAST of Lag0032098 vs. NCBI nr
Match: XP_038884231.1 (uncharacterized protein LOC120075128 [Benincasa hispida])

HSP 1 Score: 97.8 bits (242), Expect = 8.4e-17
Identity = 47/66 (71.21%), Postives = 51/66 (77.27%), Query Frame = 0 

Query: 2   PKGIIFVQELEDYNYDGDEGEIGSELKVWGIVVQGKRVDRGAPVCYLLTTSSTAELGLWC 61
           P+GIIFVQ+LED     DEGEI  E K WGIVVQG+ V+RGAPVCYLL T  TA LGLWC
Sbjct: 130 PEGIIFVQKLED---GDDEGEIDGESKAWGIVVQGRGVERGAPVCYLLKTCRTAGLGLWC 189

Query: 62  LHFCLV 68
            HFCLV
Sbjct: 190 THFCLV 192

[Close]
BLAST of Lag0032098 vs. NCBI nr
Match: XP_011656439.1 (uncharacterized protein LOC105435745 [Cucumis sativus] >KGN45836.1 hypothetical protein Csa_005561 [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 3.2e-16
Identity = 44/66 (66.67%), Postives = 51/66 (77.27%), Query Frame = 0 

Query: 2   PKGIIFVQELEDYNYDGDEGEIGSELKVWGIVVQGKRVDRGAPVCYLLTTSSTAELGLWC 61
           P+GIIFVQ+LED   + +E E+  E K WGIVVQG+ V+RGAPVCYLL TS  A LGLWC
Sbjct: 131 PEGIIFVQKLEDEEEEEEEVEMEGEPKAWGIVVQGRGVERGAPVCYLLKTSRAAGLGLWC 190

Query: 62  LHFCLV 68
            HFCLV
Sbjct: 191 THFCLV 196

[Close]
BLAST of Lag0032098 vs. NCBI nr
Match: XP_008456777.1 (PREDICTED: uncharacterized protein LOC103496620 [Cucumis melo] >KAA0052003.1 uncharacterized protein E6C27_scaffold60G004890 [Cucumis melo var. makuwa] >TYK04556.1 uncharacterized protein E5676_scaffold409G001870 [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 2.3e-14
Identity = 44/73 (60.27%), Postives = 51/73 (69.86%), Query Frame = 0 

Query: 2   PKGIIFVQELEDYNYDGDEGEIG-------SELKVWGIVVQGKRVDRGAPVCYLLTTSST 61
           P+GIIFVQ+LE+   + +E E G        E K WGIVVQG+ V+RGAPVCYLL TS  
Sbjct: 131 PEGIIFVQKLEEEEEEEEEEEEGEEEVEMEGESKAWGIVVQGRGVERGAPVCYLLKTSRA 190

Query: 62  AELGLWCLHFCLV 68
           A LGLWC HFCLV
Sbjct: 191 AGLGLWCTHFCLV 203

[Close]
BLAST of Lag0032098 vs. NCBI nr
Match: XP_022990776.1 (uncharacterized protein LOC111487559 [Cucurbita maxima])

HSP 1 Score: 89.4 bits (220), Expect = 3.0e-14
Identity = 44/67 (65.67%), Postives = 51/67 (76.12%), Query Frame = 0 

Query: 2   PKGIIFVQELEDYNYDGDEGEIGSELKVWGIVVQGKRVDRGAPVCYLL-TTSSTAELGLW 61
           P+GIIFVQELED +Y+G       E K WGIVVQG+ V+RGAPVCYLL T+SS   +GLW
Sbjct: 138 PEGIIFVQELEDEDYEG-------ESKAWGIVVQGRCVERGAPVCYLLKTSSSRGGVGLW 197

Query: 62  CLHFCLV 68
           C HFCLV
Sbjct: 198 CTHFCLV 197

The following BLAST results are available for this feature:
BLAST of Lag0032098 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022133523.16.4e-1762.16uncharacterized protein LOC111006084 [Momordica charantia][more]
XP_038884231.18.4e-1771.21uncharacterized protein LOC120075128 [Benincasa hispida][more]
XP_011656439.13.2e-1666.67uncharacterized protein LOC105435745 [Cucumis sativus] >KGN45836.1 hypothetical ... [more]
XP_008456777.12.3e-1460.27PREDICTED: uncharacterized protein LOC103496620 [Cucumis melo] >KAA0052003.1 unc... [more]
XP_022990776.13.0e-1465.67uncharacterized protein LOC111487559 [Cucurbita maxima][more]
BLAST of Lag0032098 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35127FAMILY NOT NAMEDcoord: 1..67
NoneNo IPR availablePANTHERPTHR35127:SF1SUBFAMILY NOT NAMEDcoord: 1..67

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0032098.1Lag0032098.1mRNA