Lag0032030 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0032030
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ribonuclease H
Location	chr11: 22861698 .. 22868601 (-)
RNA-Seq Expression	Lag0032030
Synteny	Lag0032030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGTCCAAGAAGGGTTGACAACAGAAGATAATGCTAGGTTGCGCCTTCAGGAGTTAGAAGCACTTGATGAAAGAAGGTTAGAGGCTCAACAAGCATTGGAATGCTACCAAGCACGGATGTCTAAAGCCTTTGACAAGAATGTGAAGCTTCGATCTTTTCAAGTTGGTGATCTTGTGCTAGCTGTTCGAAGACCCATCATCACGACACGACACACAGGGAACAAGTTAACACCTAAATGGGATGGACCCTACGTCGTCAAGGAAGTCTACACAAATGGAGCGTACAAGATCGTGGATAAAGACGGATTAAGAATAGGCCCGATAAATGGTAAATTTCTTAAAAAGTTTTATGCGTGAAATGTAATGCTCCATATCGCAAGAGCCTAAACTGCATGATACTCCTGGCCTGCATGAGTTAAAAAGGTGAACGGCCAAACATAAAAAAAAAAAAAAAAAATCTTGAACTACGTTATGACTTGATCCCTATTCCATAAGGGTACGTAGGCAGCTTAAAGAAAACTTTAAGTTCAGTCTCTATAAACAAAAAAAAAGGTTCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTATCCTGCTGCGTTGTTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGTGAAGGATCTTATGTGGTGCGTTGTTGCATTGTTCCCTCTTCTCTCAAGTTCGATGGTTCTCACGCAGCTTTGCTGGAGTTTCTTCTCCCCAAATTCGAAGGTTCTCACGCGCTCCGTTGCAGTTCCTTCTTTCAAGGTCGAAGGTTCTCACTCGCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAATTCCTTCCTCCAAGTTCAAAGGTTCTCACGCGCTTCGGTGAAGTTCCTTCCTCCAAGTCTGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTTTTACGCGCTTTGCTGCAGTTCCTTCCTCACAGTTCAAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGCGCTGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACTCGCTTCGCTGCAGTTCCTTCCTCCAAATTCGAAGGTTTCGAAGGTTCTCAAGCGCTGTGATTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCGTGCGCTTCGTTGCTCCTTCCTCCAAGTTCGAAGGTTCTTTCACGCGCTGCTGCAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCTTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTTGACGTCCTCGTTCCGCTTCATCTTCAAATGTTGGCAGTTGACGGCGTTCGCTTCGCTTCATCTTCAAAAATTGACTGTTGATAACTTCACTTCATATTCAAAAGTTGACGGTTGAAGTCTTCGCTACATCTGCAAAGATGAACAACTTTAGTGTTGCCTTTATCTTGAAAGTGTCCAGACTGGAAGATGCATCTTAGCTGCAAGTTAAAAAAATGCTTGATATCAAACCACAAAAAAAAAGAGAAAGAAAGACAATAAAAGTGTTGTTAAAAAAACGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAAAGCTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAAAGCTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGACATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAAAGCTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAAGCTGATGACGACCATGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGATTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAAAGCTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAAAGCTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGAATGGTCTAGACAGGTGGTGAAATCACTGAAAGTGAAGCTGATGACGATCGTGGTGACCACCCCTGTAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAATTTGGTGACGACTGTTGCACGAAGCTTGCACATTCAAGGGAGAAAGAAACAAATTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAATTCAAAAAAAACGAAAATTAAGAAAAAAAACGAAAATTAAAAAAAAAAAGAAAAAAAACGAAAAGTAAAAATAAAAAAAAAACGAAAATTAAAAATAAAAAATAAAAAAATAAAAAGAGAAGAAATTTTCCTACCTGGATCCCTTCTTGAATGCTCTCTGCAATTGATGTGTGCTCTCCCCTACTGAGGTTCAGTCTTATTTATAGGGGGAGTTTTAAGTTCAAATCAAAGGTTTAGATAAAGATTTGACTCAAATGAAATCCTATCTCCGGTTCAAAATTTTATGAGATAATCTTTATCTTTATCTGAACCAACTTAATTAAATTAAAATTCCTAAAAGATTATTTCAATTCAAATCAATTTGGGAATTCAAAATTTATCTAAATAATTTTATTTGGGCACACTCCAAATTTTTCTTCCAAATCAAAATTTGAGATTCAAACATCAAATTCTATGCCAAATGCAAGTTTGAATTTGGTAAAATTTTACCTCAAATAATATTTTGGGCATAATCCAAATTTTATCCCAAATGGACCAAAGTCCAAACCTCAAGTTATGTTCCATATTTTGATTAAATTGGCGCACCAAATGGAGTCAAAGTCAAGAACAAATACCTTGCATTTTGATTCCAAAATATATTTTTCGAGATTCACTCATACATAATTTGTGCCTAAATCTCGAAAAGGGGGCATTTGTTGATAGAGAAATTTTGACCAATCACGAATTGCCACGTCATTACATAAAATTAATGACGAAATTAAAGTTAATTAAATTTGGGACCAATTATAAATTGACATGTGTCCCAAATTTAATTTGAAAACAAAGTTGGCCAATTATAAATTTATAGAACCAAATTTCTATTTGATCAATTAATTATAATTAAATTATTTCAATCAAATTAATTAATTTGCCCAATTAATTAAAAATAATAATTATTTGGATCAAATTTGGATCTTTTAAATGTCTGGGTCATATGGTTTTGGGTCAAATATAAACCAAACCCAAGACTAAATGGTTCAGCCCAAGACCAATAAAACCCAAGCCCAAGTTGTTAGGCCCAAAAGTTACCAGGGCCCATCCTGCGAGAACTCTATAAATAGGGGGGTTCACCATCATTTCAAGGGTCAGAATTTTGAAGCTCAAAGCCAGAGTCAGAGAATTCACAGAACTTCATCAAGATTGAAGACTGAAGATTGAAGACTGAAGACTCCTTGAAATCCACAAGTTTCAAAGTGCTGAACACTTCCTGAAGACTGAAGACTCCTTCAAGATTTGGAAGACTTCAAGCTCCAAGAATCCGTTGAAGCTCCAGACTCGAGATCAAGCGTTCCAGCCCTCGAGTGAAACACATCCACACACAAGAGAGAGAATCAGAGGATCAACATTAGAGATTGTATATCCACACGCATGCAAATATTAATACAAGTATATCGTTTATTCCACGTGTCTCCATCTTTGAAGTCTCGTGCGAACAGTGGTAAAGGAGGTTCATCTGATAGAAAAAATAATGCAGAATTTATACGATCAGGTTCTCTATCTCTGTCTTTTTGTCTCTCTTTCTCAAAATTAATTTGCATTGAGACTTGTAGATCAGTATAACTTGTTCGTTGAATTGCAAGGTTGTTGCTGTCAAGATGGTCAGTTGAAAAAGATGGCATTACGAGTAAGTATATAAACATGCTTTTTTGCTTACGCAGGAGAGCTGACATTCAACACCCAATTAAATGTCATTTTGCAAGTTTGCATAGATTATCTACTAATTTGAAAAGAGTAATGCAAGCTTGCGCTCAATGACATTTTTGGCTTAAATGACTCTGATGTGTAAAATCTGCATGTTTGTACCATTAGGTGATTGCCGAAAGCCAAATACTTTGTAGTTGGTAAATTAGTCGTAGAGGTAAGATATATGGGGCATCTTTATTCCTTCCAATTATTATCAATAAGTGAGTTGCACGGTCTACCGAGCTATCATTTATAGTTTTATTTAAAATATAGGATTATAAATATTTGACAACAAATTATACTTTTTATGTTGGACAGAAAAAAAACGCGCAGGACATATAATGTCGGACGATAGAAAATGCGCGCTTGGAATTGTTTTTAGGCATTTCTTGGGTTTTATTCACAATTTTGGGTGAAAAATGGTTAGTGTAGTATTTTGTTCAGAGCGAAATTTTGGGTGAAGCATTTCTCTTCCTCTGTTCACGGCCAACTTTTTTCACAAGCCGAAGTTGTAGCCGCCGCCATGGTTTGTCTTCTATCTTTTCAATTTATTCTTCGAGAACAATGTCATCTGAGTTTTAAGTTAGCGATCAATCTTCAATTCCTTATTTATGTTCATTGTTGCAGGTGAAGTATTCGAGGGAACCAAACAAAATCCATCCATGAACACACGATCTGTGCAATTTCTGTCAATATTTTCTTCCCATCTTTTATGTAAAAGTTTAACTGATATTATACTTCCTTTTCCACACATATTTCAGATGCATATAGATTTCTGTCAATATTTTCTTCCCATTTTGCAATTGATCCTTAGATGCCAAAAGAGAAATTAAAAAAAAAATAAAAATAAAAACAGACGGGAGCAGTTTTGAAGGACTTGAACCAACAAAATCCATCCATGATATTTCTACCAAAGAGGTACATTTTTGTCCTTAAGTCCCTTCTCTGCCTTCGATCATTTAGTTAATTAATTTGTTGCTTGCAGGCCCAGAGGTTTATAGAGCTGCATGAAAACCTTTAAAGGTGTCCCAACATTTTGAATTTGTTACTAAATTTCTTTCTTCCTTCTCTCAAGTTGTAAATGTTAATTTTTATGCACTTATCCGATTAGTACTATTTTTCAAGGTGCTGATGGTGTTCTAGTTCCAGGAGGTTTTGGTGGTAGGGGATAAGTGCATATTATGGTTATGGTTATTATCAAATTTCAAATGGGATGAAACTTTTCTATTTTATGCCTTATGCTCTTAAGCTTCCCATCAAGAAGTTTTGTTGCAAAATGTAGTTAGGTTGAAGTAACATTTCTGAAACTTGTGTATATTATGCTCAAACTTTTGCAGGGAGAACAATTAAAGCAATCGATTGATTTGGATCTTTTGGATCAAACTACTATAATTCTTTGTCTAGATATACTCATTAGGTTTACAGGACTGTGTTGTTATTTCCTAACTCATCAGTTTCATTGGCTTTACAAGACTGTGTTGTTGGGTTACTGTTCACTTTGTTTCCAGTATTGGGGTGGGAATTCTGGTATTCTTGAAGGAGTGTGATATCCATGAGTAAAGTGCAAGTATAAAGGATTTTGGGGCCTTTGTGGTTAAGGATTTTATGTTCAAAGAAACATGTTTTTCTTTTCTAATATAGTGCCTTTGGGAAACTTGTTTTATGATTTGAAATGCATTTAGGGGTCAGGCAATGAAAGAATTTAGAGTTGAAGTGGAGGCTATTGGCCATGATCAGGCAGAGAAGAATTTCCACTACATGAGGTACTAAAATCAATATCTTGTTTTGTGACTGCATCATTGATTCCATTCTCTTTTGTCTAAATTTCAAGCATTTCACTGATATTAGTTGGTTGGCGAAGTCTACATTCTTTTTTTTTTTTAATCTCTGGATTTGGTTTTGTTTGTATTCTTGGAATGGGACCCAAGATGTTCTAATTGAATTCTCCGATGATTATATCTCCTCTCCTTTTTTGGCTTAACAACGTAAATTGCTCATACTTTTAGTATATCAGTGTCTTTCAGTAGTTAGTTGAAAAATGATTTAAGACCTTGTTTCGATTTGAAGTAGTAGATCATCATCAATAATTTGAACTGCACTGTTGAAGATGTTCTGTGTAATGGATGTAATTACGACTAAATACTCTCTTTAATGTGTTGTTAGTGTTTTAATGTCCATGGTCGTCGTCGAGCGTCACAAGCCACTCGTCGATGTGAAACTCTTCAGGTTGTGTTCGATTTGGCAATTGAGGAATCCTTCGTCTTCTTCGACGACGACTCATAACCTTCACCATAGTGGTCATGACCCTAGCGAAAGAAACTCAACAACGTCGAATAATATCAAATTTCCATCATCTTCCGAGACAGAGTTCTCTATGGCGAAGTCGTTGCCTCCTTGGCGTCGGCTTTGA

mRNA sequence

ATGGCTGTCCAAGAAGGGTTGACAACAGAAGATAATGCTAGGTTGCGCCTTCAGGAGTTAGAAGCACTTGATGAAAGAAGGTTAGAGGCTCAACAAGCATTGGAATGCTACCAAGCACGGATGTCTAAAGCCTTTGACAAGAATGTGAAGCTTCGATCTTTTCAAGTTGGTGATCTTGTGCTAGCTGTTCGAAGACCCATCATCACGACACGACACACAGGGAACAAGTTAACACCTAAATGGGATGGACCCTACGTCGTCAAGGAAGTCTACACAAATGGAGCGTACAAGATCGTGGATAAAGACGGATTAAGAATAGGCCCGATAAATGGTTCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTATCCTGCTGCGTTGTTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGTGAAGGATCTTATGTGGTGCGTTGTTGCATTGTTCCCTCTTCTCTCAAGTTCGATGGTTCTCACGCAGCTTTGCTGGAGTTTCTTCTCCCCAAATTCGAAGGTTCTCACGCGCTCCGTTGCAGTTCCTTCTTTCAAGGTCGAAGGTTCTCACTCGCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAATTCCTTCCTCCAAGTTCAAAGGTTCTCACGCGCTTCGGTGAAGTTCCTTCCTCCAAGTCTGAAGTTCAAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGCGCTGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGTTCCTTCCTCCAAGTTCGAAGGTTCTCGTGCGCTTCGTTGCTCCTTCCTCCAAGTTCGAAGGTTCTTTCACGCGCTGCTGCAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCTTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTTGACGTCCTCGTTCCGCTTCATCTTCAAATGTTGGCAGTTGACGGCGTTCGCTTCGCTTCATCTTCAAAAATTGACTGTGGTGAAATCACTGCAAGTGAAAAGCTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGACAGGTGGTGAAATCACTGCAAGTGAAAAGCTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAAGCTGATGACGACCATGGTGGTGAAATCACTGCAAGTGAAAAGCTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGAATGGTCTAGACAGGTGGTGAAATCACTGAAAGTGAAGCTGATGACGATCGTGGTGACCACCCCTGTAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGTTTCAAAGTGCTGAACACTTCCTGAAGACTGAAGACTCCTTCAAGATTTGGAAGACTTCAAGCTCCAAGAATCCGTTGAAGCTCCAGACTCGAGATCAAGCGTTCCAGCCCTCGAATCAGTATAACTTGTTCGTTGAATTGCAAGGTTGTTGCTGTCAAGATGGTCAGTTGAAAAAGATGGCATTACGAGTTTACAGGACTGTGTTGTTATTTCCTAACTCATCAGTTTCATTGGCTTTACAAGACTGTGTTGTTGGGTTACTGTTCACTTTGTTTCCAGTATTGGGGTGGGAATTCTGGGGTCAGGCAATGAAAGAATTTAGAGTTGAAGTGGAGGCTATTGGCCATGATCAGGCAGAGAAGAATTTCCACTACATGAGTGTTTTAATGTCCATGGTCGTCGTCGAGCGTCACAAGCCACTCGTCGATGTGAAACTCTTCAGGTTGTGTTCGATTTGGCAATTGAGGAATCCTTCGTCTTCTTCGACGACGACTCATAACCTTCACCATAGTGGTCATGACCCTAGCGAAAGAAACTCAACAACGTCGAATAATATCAAATTTCCATCATCTTCCGAGACAGAGTTCTCTATGGCGAAGTCGTTGCCTCCTTGGCGTCGGCTTTGA

Coding sequence (CDS)

ATGGCTGTCCAAGAAGGGTTGACAACAGAAGATAATGCTAGGTTGCGCCTTCAGGAGTTAGAAGCACTTGATGAAAGAAGGTTAGAGGCTCAACAAGCATTGGAATGCTACCAAGCACGGATGTCTAAAGCCTTTGACAAGAATGTGAAGCTTCGATCTTTTCAAGTTGGTGATCTTGTGCTAGCTGTTCGAAGACCCATCATCACGACACGACACACAGGGAACAAGTTAACACCTAAATGGGATGGACCCTACGTCGTCAAGGAAGTCTACACAAATGGAGCGTACAAGATCGTGGATAAAGACGGATTAAGAATAGGCCCGATAAATGGTTCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTATCCTGCTGCGTTGTTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGTGAAGGATCTTATGTGGTGCGTTGTTGCATTGTTCCCTCTTCTCTCAAGTTCGATGGTTCTCACGCAGCTTTGCTGGAGTTTCTTCTCCCCAAATTCGAAGGTTCTCACGCGCTCCGTTGCAGTTCCTTCTTTCAAGGTCGAAGGTTCTCACTCGCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAATTCCTTCCTCCAAGTTCAAAGGTTCTCACGCGCTTCGGTGAAGTTCCTTCCTCCAAGTCTGAAGTTCAAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGCGCTGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGTTCCTTCCTCCAAGTTCGAAGGTTCTCGTGCGCTTCGTTGCTCCTTCCTCCAAGTTCGAAGGTTCTTTCACGCGCTGCTGCAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCTTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTTGACGTCCTCGTTCCGCTTCATCTTCAAATGTTGGCAGTTGACGGCGTTCGCTTCGCTTCATCTTCAAAAATTGACTGTGGTGAAATCACTGCAAGTGAAAAGCTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGACAGGTGGTGAAATCACTGCAAGTGAAAAGCTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAAGCTGATGACGACCATGGTGGTGAAATCACTGCAAGTGAAAAGCTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGAATGGTCTAGACAGGTGGTGAAATCACTGAAAGTGAAGCTGATGACGATCGTGGTGACCACCCCTGTAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGTTTCAAAGTGCTGAACACTTCCTGAAGACTGAAGACTCCTTCAAGATTTGGAAGACTTCAAGCTCCAAGAATCCGTTGAAGCTCCAGACTCGAGATCAAGCGTTCCAGCCCTCGAATCAGTATAACTTGTTCGTTGAATTGCAAGGTTGTTGCTGTCAAGATGGTCAGTTGAAAAAGATGGCATTACGAGTTTACAGGACTGTGTTGTTATTTCCTAACTCATCAGTTTCATTGGCTTTACAAGACTGTGTTGTTGGGTTACTGTTCACTTTGTTTCCAGTATTGGGGTGGGAATTCTGGGGTCAGGCAATGAAAGAATTTAGAGTTGAAGTGGAGGCTATTGGCCATGATCAGGCAGAGAAGAATTTCCACTACATGAGTGTTTTAATGTCCATGGTCGTCGTCGAGCGTCACAAGCCACTCGTCGATGTGAAACTCTTCAGGTTGTGTTCGATTTGGCAATTGAGGAATCCTTCGTCTTCTTCGACGACGACTCATAACCTTCACCATAGTGGTCATGACCCTAGCGAAAGAAACTCAACAACGTCGAATAATATCAAATTTCCATCATCTTCCGAGACAGAGTTCTCTATGGCGAAGTCGTTGCCTCCTTGGCGTCGGCTTTGA

Protein sequence

MAVQEGLTTEDNARLRLQELEALDERRLEAQQALECYQARMSKAFDKNVKLRSFQVGDLVLAVRRPIITTRHTGNKLTPKWDGPYVVKEVYTNGAYKIVDKDGLRIGPINGSSLQFLLSKFEGPYTVRYCVVPSPSSKVLRCILLRCSFSKFEGSQLYDCYVVPPPSVKDLMWCVVALFPLLSSSMVLTQLCWSFFSPNSKVLTRSVAVPSFKVEGSHSLRCSSFSPSSKVHALRCSSFSQIRRFSRASLCNSFPQVRRFSRASLQFLPPSSKVLTRFGEVPSSKSEVQRFSRASLQFLPPKFEGSHVASLQFLPPSLKVLTSLRFALRFVAVPSSKFEVPSSKFEGSRALRCSFLQVRRFFHALLQLLPPSSKVPSRASLAPSPSSKALLSTAPSPSSKVLLSTPLFEGSPLRFSFSKFEGSPLLLFKCLAAVDVLVPLHLQMLAVDGVRFASSSKIDCGEITASEKLMTTVVTTPAGNYSHQSDWSRQTGGEITASEKLMTTVVTTPAGNYSHQSDWSRQVVKSLQVKADDDHGGEITASEKLMTTVVTTPAGNYSHQSEWSRQVVKSLKVKLMTIVVTTPVGNYSHQSDWSRQFQSAEHFLKTEDSFKIWKTSSSKNPLKLQTRDQAFQPSNQYNLFVELQGCCCQDGQLKKMALRVYRTVLLFPNSSVSLALQDCVVGLLFTLFPVLGWEFWGQAMKEFRVEVEAIGHDQAEKNFHYMSVLMSMVVVERHKPLVDVKLFRLCSIWQLRNPSSSSTTTHNLHHSGHDPSERNSTTSNNIKFPSSSETEFSMAKSLPPWRRL

Homology

[Close]

BLAST of Lag0032030 vs. NCBI nr
Match: XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])

HSP 1 Score: 211.8 bits (538), Expect = 2.1e-50
Identity = 104/115 (90.43%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1    MAVQEGLTTEDNARLRLQELEALDERRLEAQQALECYQARMSKAFDKNVKLRSFQVGDLV 60
            MAVQEGLTTEDN +LRLQELEALDE+RLEAQQALECYQARMSKAFDK+VK RSFQVGDLV
Sbjct: 2313 MAVQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLV 2372

Query: 61   LAVRRPIITTRHTGNKLTPKWDGPYVVKEVYTNGAYKIVDKDGLRIGPINGSSLQ 116
            LAVRRPIITTRHTGNK TPKWDGPY+VKEVYTNGAYKIVD+DGLRIGPING  L+
Sbjct: 2373 LAVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKIVDQDGLRIGPINGKFLK 2427

[Close]

BLAST of Lag0032030 vs. NCBI nr
Match: XP_031742032.1 (uncharacterized protein LOC116404025 [Cucumis sativus])

HSP 1 Score: 211.8 bits (538), Expect = 2.1e-50
Identity = 104/115 (90.43%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1    MAVQEGLTTEDNARLRLQELEALDERRLEAQQALECYQARMSKAFDKNVKLRSFQVGDLV 60
            MAVQEGLTTEDN +LRLQELEALDE+RLEAQQALECYQARMSKAFDK+VK RSFQVGDLV
Sbjct: 2313 MAVQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLV 2372

Query: 61   LAVRRPIITTRHTGNKLTPKWDGPYVVKEVYTNGAYKIVDKDGLRIGPINGSSLQ 116
            LAVRRPIITTRHTGNK TPKWDGPY+VKEVYTNGAYKIVD+DGLRIGPING  L+
Sbjct: 2373 LAVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKIVDQDGLRIGPINGKFLK 2427

[Close]

BLAST of Lag0032030 vs. NCBI nr
Match: KAA0048376.1 (uncharacterized protein E6C27_scaffold264G00950 [Cucumis melo var. makuwa])

HSP 1 Score: 211.8 bits (538), Expect = 2.1e-50
Identity = 103/115 (89.57%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1    MAVQEGLTTEDNARLRLQELEALDERRLEAQQALECYQARMSKAFDKNVKLRSFQVGDLV 60
            MA+QEGLTTEDNARLRLQELEALDE+RLEAQQALECYQARMSKAFDK VK RSFQVGDLV
Sbjct: 1489 MAIQEGLTTEDNARLRLQELEALDEKRLEAQQALECYQARMSKAFDKQVKPRSFQVGDLV 1548

Query: 61   LAVRRPIITTRHTGNKLTPKWDGPYVVKEVYTNGAYKIVDKDGLRIGPINGSSLQ 116
            LAVRRPIITTRHTGNK TPKWDGPY+VKEV+TNGAYKI+D+DGLRIGPING  L+
Sbjct: 1549 LAVRRPIITTRHTGNKFTPKWDGPYIVKEVFTNGAYKIIDQDGLRIGPINGKFLK 1603

[Close]

BLAST of Lag0032030 vs. NCBI nr
Match: XP_031737372.1 (uncharacterized protein LOC116402244 [Cucumis sativus])

HSP 1 Score: 211.8 bits (538), Expect = 2.1e-50
Identity = 104/115 (90.43%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1    MAVQEGLTTEDNARLRLQELEALDERRLEAQQALECYQARMSKAFDKNVKLRSFQVGDLV 60
            MAVQEGLTTEDN +LRLQELEALDE+RLEAQQALECYQARMSKAFDK+VK RSFQVGDLV
Sbjct: 1688 MAVQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLV 1747

Query: 61   LAVRRPIITTRHTGNKLTPKWDGPYVVKEVYTNGAYKIVDKDGLRIGPINGSSLQ 116
            LAVRRPIITTRHTGNK TPKWDGPY+VKEVYTNGAYKIVD+DGLRIGPING  L+
Sbjct: 1748 LAVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKIVDQDGLRIGPINGKFLK 1802

[Close]

BLAST of Lag0032030 vs. NCBI nr
Match: XP_031742199.1 (uncharacterized protein LOC105435721 [Cucumis sativus])

HSP 1 Score: 211.8 bits (538), Expect = 2.1e-50
Identity = 104/115 (90.43%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1    MAVQEGLTTEDNARLRLQELEALDERRLEAQQALECYQARMSKAFDKNVKLRSFQVGDLV 60
            MAVQEGLTTEDN +LRLQELEALDE+RLEAQQALECYQARMSKAFDK+VK RSFQVGDLV
Sbjct: 2172 MAVQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLV 2231

Query: 61   LAVRRPIITTRHTGNKLTPKWDGPYVVKEVYTNGAYKIVDKDGLRIGPINGSSLQ 116
            LAVRRPIITTRHTGNK TPKWDGPY+VKEVYTNGAYKIVD+DGLRIGPING  L+
Sbjct: 2232 LAVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKIVDQDGLRIGPINGKFLK 2286

[Close]

BLAST of Lag0032030 vs. ExPASy TrEMBL
Match: A0A5A7U2B8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00950 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.0e-50
Identity = 103/115 (89.57%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1    MAVQEGLTTEDNARLRLQELEALDERRLEAQQALECYQARMSKAFDKNVKLRSFQVGDLV 60
            MA+QEGLTTEDNARLRLQELEALDE+RLEAQQALECYQARMSKAFDK VK RSFQVGDLV
Sbjct: 1489 MAIQEGLTTEDNARLRLQELEALDEKRLEAQQALECYQARMSKAFDKQVKPRSFQVGDLV 1548

Query: 61   LAVRRPIITTRHTGNKLTPKWDGPYVVKEVYTNGAYKIVDKDGLRIGPINGSSLQ 116
            LAVRRPIITTRHTGNK TPKWDGPY+VKEV+TNGAYKI+D+DGLRIGPING  L+
Sbjct: 1549 LAVRRPIITTRHTGNKFTPKWDGPYIVKEVFTNGAYKIIDQDGLRIGPINGKFLK 1603

[Close]

BLAST of Lag0032030 vs. ExPASy TrEMBL
Match: A0A5A7UD71 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold135G001090 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 5.1e-50
Identity = 102/115 (88.70%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MAVQEGLTTEDNARLRLQELEALDERRLEAQQALECYQARMSKAFDKNVKLRSFQVGDLV 60
           MA+QEGLTTEDNARLRLQELEALDE+RL+AQQALECYQARMSKAFDK V+ RSFQVGDLV
Sbjct: 93  MAIQEGLTTEDNARLRLQELEALDEKRLKAQQALECYQARMSKAFDKQVRPRSFQVGDLV 152

Query: 61  LAVRRPIITTRHTGNKLTPKWDGPYVVKEVYTNGAYKIVDKDGLRIGPINGSSLQ 116
           LAVRRPIITTRHTGNK TPKWDGPY+VKEV+TNGAYKIVD+DGLRIGPING  L+
Sbjct: 153 LAVRRPIITTRHTGNKFTPKWDGPYIVKEVFTNGAYKIVDQDGLRIGPINGKFLK 207

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BLAST of Lag0032030 vs. ExPASy TrEMBL
Match: A0A5A7TZU9 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 6.6e-50
Identity = 101/115 (87.83%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1    MAVQEGLTTEDNARLRLQELEALDERRLEAQQALECYQARMSKAFDKNVKLRSFQVGDLV 60
            MA+QEGLTTEDNARLRL+ELEALDE+RLEAQQALECYQARMSKAFDK V+ RSFQVGDLV
Sbjct: 2270 MAIQEGLTTEDNARLRLEELEALDEKRLEAQQALECYQARMSKAFDKQVRPRSFQVGDLV 2329

Query: 61   LAVRRPIITTRHTGNKLTPKWDGPYVVKEVYTNGAYKIVDKDGLRIGPINGSSLQ 116
            LAVRRPIITTRHTGNK TPKWDGPY+VKEV+TNGAYKI+D+DGLRIGPING  L+
Sbjct: 2330 LAVRRPIITTRHTGNKFTPKWDGPYIVKEVFTNGAYKIIDQDGLRIGPINGRFLK 2384

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BLAST of Lag0032030 vs. ExPASy TrEMBL
Match: A0A5D3D1E5 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G004020 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 6.6e-50
Identity = 101/115 (87.83%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1    MAVQEGLTTEDNARLRLQELEALDERRLEAQQALECYQARMSKAFDKNVKLRSFQVGDLV 60
            MA+QEGLTTEDNARLRLQELEALDE+RLEAQQALECYQARMSKAFDK V+ RSFQVGDLV
Sbjct: 2200 MAIQEGLTTEDNARLRLQELEALDEKRLEAQQALECYQARMSKAFDKQVRPRSFQVGDLV 2259

Query: 61   LAVRRPIITTRHTGNKLTPKWDGPYVVKEVYTNGAYKIVDKDGLRIGPINGSSLQ 116
            LAVRRPIITTRHTGNK TPKWDGPY+VKEV+TNGAYKI+D+DGL+IGPING  L+
Sbjct: 2260 LAVRRPIITTRHTGNKFTPKWDGPYIVKEVFTNGAYKIIDQDGLQIGPINGKFLK 2314

[Close]

BLAST of Lag0032030 vs. ExPASy TrEMBL
Match: A0A5A7V098 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold108G002050 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 8.7e-50
Identity = 102/115 (88.70%), Postives = 109/115 (94.78%), Query Frame = 0


Query: 1   MAVQEGLTTEDNARLRLQELEALDERRLEAQQALECYQARMSKAFDKNVKLRSFQVGDLV 60
           MAVQEGLTTEDN +LRLQELEALDE+RLEAQQALECYQARMSKAFDK+VK RSFQVGDLV
Sbjct: 1   MAVQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLV 60

Query: 61  LAVRRPIITTRHTGNKLTPKWDGPYVVKEVYTNGAYKIVDKDGLRIGPINGSSLQ 116
           LAVRRPIITTRH GNK TPKWDGPY+VKEVYTNGAYKIVD+DGL+IGPING  L+
Sbjct: 61  LAVRRPIITTRHMGNKFTPKWDGPYIVKEVYTNGAYKIVDRDGLKIGPINGKFLK 115

The following BLAST results are available for this feature:

BLAST of Lag0032030 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031739134.1	2.1e-50	90.43	uncharacterized protein LOC116402863 [Cucumis sativus]	[more]
XP_031742032.1	2.1e-50	90.43	uncharacterized protein LOC116404025 [Cucumis sativus]	[more]
KAA0048376.1	2.1e-50	89.57	uncharacterized protein E6C27_scaffold264G00950 [Cucumis melo var. makuwa]	[more]
XP_031737372.1	2.1e-50	90.43	uncharacterized protein LOC116402244 [Cucumis sativus]	[more]
XP_031742199.1	2.1e-50	90.43	uncharacterized protein LOC105435721 [Cucumis sativus]	[more]

BLAST of Lag0032030 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0032030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U2B8	1.0e-50	89.57	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold26...	[more]
A0A5A7UD71	5.1e-50	88.70	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TZU9	6.6e-50	87.83	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940...	[more]
A0A5D3D1E5	6.6e-50	87.83	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00402...	[more]
A0A5A7V098	8.7e-50	88.70	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Lag0032030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 20..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 754..804
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 773..794

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0032030.1	Lag0032030.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity