Lag0031891 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0031891
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Locationchr11: 17904665 .. 17905198 (-)
RNA-Seq ExpressionLag0031891
SyntenyLag0031891
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCGTTGCTGCCTTCTCCCTCGTTCACTCTAGGATGCGATTCTCTCTTATGGTTGCATCTCTCAAGCGGTCCTTTTTCAGTAGCTTCAGCACGCCTTTCTTTTTGGGATATCTCTTCTACTCGTCGTGCCCAGGTGGACCCAAATATTCTTACAAATTTGTGGCGTGCAACGATCCCAAAGAAAGTCGGATTCTTTATGTGGACAGTGCTTCACCGTCGGCTTCACACGGCTGATCGTCTGCAAAGAGTTTTTCAACATTCCGCCTTAAGCCCAAATGTTTGCTCTATCTGCCACGCAAACTCAGAATCATTGGATCACCTTTTTGCTCTCTGCCCGTTGGTTTCTGGTATGTGGGTTCAGATTTTTCAAGCTTCGGATGCTCAATTTCCCATCCCTTCTCAAGCTCATATGCTCTGTGAGGAGGCTTTTTCTTTCAAGATTCGCTCTCAAAGGGGTTTGCTTTTCCAAGCTCTGATTGTGGCTACCTTTTGGGTTATTTGGAATGAGCGGAATAGTAGAATCTTTTGA

mRNA sequence

ATGGCCTCGTTGCTGCCTTCTCCCTCGTTCACTCTAGGATGCGATTCTCTCTTATGGTTGCATCTCTCAAGCGGTCCTTTTTCAGTAGCTTCAGCACGCCTTTCTTTTTGGGATATCTCTTCTACTCGTCGTGCCCAGGTGGACCCAAATATTCTTACAAATTTGTGGCGTGCAACGATCCCAAAGAAAGTCGGATTCTTTATGTGGACAGTGCTTCACCGTCGGCTTCACACGGCTGATCGTCTGCAAAGAGTTTTTCAACATTCCGCCTTAAGCCCAAATGTTTGCTCTATCTGCCACGCAAACTCAGAATCATTGGATCACCTTTTTGCTCTCTGCCCGTTGGTTTCTGGTATGTGGGTTCAGATTTTTCAAGCTTCGGATGCTCAATTTCCCATCCCTTCTCAAGCTCATATGCTCTGTGAGGAGGCTTTTTCTTTCAAGATTCGCTCTCAAAGGGGTTTGCTTTTCCAAGCTCTGATTGTGGCTACCTTTTGGGTTATTTGGAATGAGCGGAATAGTAGAATCTTTTGA

Coding sequence (CDS)

ATGGCCTCGTTGCTGCCTTCTCCCTCGTTCACTCTAGGATGCGATTCTCTCTTATGGTTGCATCTCTCAAGCGGTCCTTTTTCAGTAGCTTCAGCACGCCTTTCTTTTTGGGATATCTCTTCTACTCGTCGTGCCCAGGTGGACCCAAATATTCTTACAAATTTGTGGCGTGCAACGATCCCAAAGAAAGTCGGATTCTTTATGTGGACAGTGCTTCACCGTCGGCTTCACACGGCTGATCGTCTGCAAAGAGTTTTTCAACATTCCGCCTTAAGCCCAAATGTTTGCTCTATCTGCCACGCAAACTCAGAATCATTGGATCACCTTTTTGCTCTCTGCCCGTTGGTTTCTGGTATGTGGGTTCAGATTTTTCAAGCTTCGGATGCTCAATTTCCCATCCCTTCTCAAGCTCATATGCTCTGTGAGGAGGCTTTTTCTTTCAAGATTCGCTCTCAAAGGGGTTTGCTTTTCCAAGCTCTGATTGTGGCTACCTTTTGGGTTATTTGGAATGAGCGGAATAGTAGAATCTTTTGA

Protein sequence

MASLLPSPSFTLGCDSLLWLHLSSGPFSVASARLSFWDISSTRRAQVDPNILTNLWRATIPKKVGFFMWTVLHRRLHTADRLQRVFQHSALSPNVCSICHANSESLDHLFALCPLVSGMWVQIFQASDAQFPIPSQAHMLCEEAFSFKIRSQRGLLFQALIVATFWVIWNERNSRIF
Homology
BLAST of Lag0031891 vs. NCBI nr
Match: RVW27524.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 109.8 bits (273), Expect = 2.5e-20
Identity = 60/164 (36.59%), Postives = 92/164 (56.10%), Query Frame = 0

Query: 15  DSLLWLHLSSGPFSVASARLSFWDISSTRRAQVDPNILTNLWRATIPKKVGFFMWTVLHR 74
           D   W   SSG F+V S  L+   IS      V P  L  +W + +P K+ FF+W V H+
Sbjct: 820 DKRSWSLSSSGLFTVKSFFLALSQISGL--PLVFPTKL--VWNSQVPFKIKFFVWLVAHK 879

Query: 75  RLHTADRLQRVFQHSALSPNVCSICHANSESLDHLFALCPLVSGMWVQIFQASDAQFPIP 134
           +++T+D LQ    + ALSP++C +C    E++DHLF  C +  G+W ++FQ +   +  P
Sbjct: 880 KVNTSDMLQLRRPYKALSPDICMLCMERGETVDHLFLHCSMTMGLWHRLFQLTKIDWVPP 939

Query: 135 SQAHMLCEEAFSFKIRSQRGL-LFQALIVATFWVIWNERNSRIF 178
                +    F+    S+RG+ L+QA  +A  WV+W ERN+RIF
Sbjct: 940 RSVFDMISINFNGFGSSKRGIVLWQAACIAILWVVWRERNARIF 979

BLAST of Lag0031891 vs. NCBI nr
Match: RVW74148.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 109.4 bits (272), Expect = 3.3e-20
Identity = 60/164 (36.59%), Postives = 91/164 (55.49%), Query Frame = 0

Query: 15  DSLLWLHLSSGPFSVASARLSFWDISSTRRAQVDPNILTNLWRATIPKKVGFFMWTVLHR 74
           D   W   SSG F+V S  L+   IS      V P  L  +W + +P K+ FF+W V H+
Sbjct: 212 DKRSWSLSSSGLFTVKSFFLALSQISGL--PSVFPTKL--VWNSQVPFKIKFFVWLVAHK 271

Query: 75  RLHTADRLQRVFQHSALSPNVCSICHANSESLDHLFALCPLVSGMWVQIFQASDAQFPIP 134
           +++T D LQ    + ALSP++C +C    E++DHLF  C +  G+W ++FQ +   +  P
Sbjct: 272 KVNTNDMLQLRRPYKALSPDICMLCMERGETVDHLFLHCSMTMGLWHRLFQLTKIDWVPP 331

Query: 135 SQAHMLCEEAFSFKIRSQRGL-LFQALIVATFWVIWNERNSRIF 178
                +    F+    S+RG+ L+QA  +A  WV+W ERN+RIF
Sbjct: 332 RSVFDMISINFNGFGSSKRGIVLWQAACIAILWVVWRERNARIF 371

BLAST of Lag0031891 vs. NCBI nr
Match: CAN68165.1 (hypothetical protein VITISV_008538 [Vitis vinifera])

HSP 1 Score: 109.4 bits (272), Expect = 3.3e-20
Identity = 60/164 (36.59%), Postives = 91/164 (55.49%), Query Frame = 0

Query: 15   DSLLWLHLSSGPFSVASARLSFWDISSTRRAQVDPNILTNLWRATIPKKVGFFMWTVLHR 74
            D   W   SSG F+V S  L+   IS      V P  L  +W + +P K+ FF+W V H+
Sbjct: 1126 DKRSWSLSSSGLFTVKSFFLALSQISGL--PSVFPTKL--VWNSQVPFKIKFFVWLVAHK 1185

Query: 75   RLHTADRLQRVFQHSALSPNVCSICHANSESLDHLFALCPLVSGMWVQIFQASDAQFPIP 134
            +++T D LQ    + ALSP++C +C    E++DHLF  C +  G+W ++FQ +   +  P
Sbjct: 1186 KVNTNDMLQLRRPYKALSPDICMLCMERGETVDHLFLHCSMTMGLWHRLFQLTKIDWVPP 1245

Query: 135  SQAHMLCEEAFSFKIRSQRGL-LFQALIVATFWVIWNERNSRIF 178
                 +    F+    S+RG+ L+QA  +A  WV+W ERN+RIF
Sbjct: 1246 RSVFDMISINFNGFGSSKRGIVLWQAACIAILWVVWRERNARIF 1285

BLAST of Lag0031891 vs. NCBI nr
Match: KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 109.0 bits (271), Expect = 4.2e-20
Identity = 60/173 (34.68%), Postives = 90/173 (52.02%), Query Frame = 0

Query: 5   LPSPSFTLGCDSLLWLHLSSGPFSVASARLSFWDISSTRRAQVDPNILTNLWRATIPKKV 64
           LP+P    G    LW   S+  F  AS +    + S++      P++   LW+   PKK 
Sbjct: 728 LPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASAS-PTNFHPSLYKTLWKVDFPKKC 787

Query: 65  GFFMWTVLHRRLHTADRLQRVFQHSALSPNVCSICHANSESLDHLFALCPLVSGMWVQIF 124
            FF+WT++H  ++TADRLQ+   +  LSPN C +C+ + E ++HLF  CP    +W +  
Sbjct: 788 KFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKA- 847

Query: 125 QASDAQFPIPSQAHMLCEEAFSFKIRSQRGLLFQALIVATFWVIWNERNSRIF 178
           QA       P+    L +   S  I++Q+GL+    I    W IW ERN+RIF
Sbjct: 848 QALLKWNSTPNDVKSLAQNICSLNIKTQKGLITFNTIAILLWKIWLERNNRIF 898

BLAST of Lag0031891 vs. NCBI nr
Match: KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 109.0 bits (271), Expect = 4.2e-20
Identity = 60/173 (34.68%), Postives = 90/173 (52.02%), Query Frame = 0

Query: 5   LPSPSFTLGCDSLLWLHLSSGPFSVASARLSFWDISSTRRAQVDPNILTNLWRATIPKKV 64
           LP+P    G    LW   S+  F  AS +    + S++      P++   LW+   PKK 
Sbjct: 822 LPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASAS-PTNFHPSLYKTLWKVDFPKKC 881

Query: 65  GFFMWTVLHRRLHTADRLQRVFQHSALSPNVCSICHANSESLDHLFALCPLVSGMWVQIF 124
            FF+WT++H  ++TADRLQ+   +  LSPN C +C+ + E ++HLF  CP    +W +  
Sbjct: 882 KFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKA- 941

Query: 125 QASDAQFPIPSQAHMLCEEAFSFKIRSQRGLLFQALIVATFWVIWNERNSRIF 178
           QA       P+    L +   S  I++Q+GL+    I    W IW ERN+RIF
Sbjct: 942 QALLKWNSTPNDVKSLAQNICSLNIKTQKGLITFNTIAILLWKIWLERNNRIF 992

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RVW27524.12.5e-2036.59putative ribonuclease H protein [Vitis vinifera][more]
RVW74148.13.3e-2036.59putative ribonuclease H protein [Vitis vinifera][more]
CAN68165.13.3e-2036.59hypothetical protein VITISV_008538 [Vitis vinifera][more]
KAA0044556.14.2e-2034.68LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0041397.14.2e-2034.68LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 35..120
e-value: 2.2E-16
score: 60.3
NoneNo IPR availablePANTHERPTHR33116REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATEDcoord: 37..143
NoneNo IPR availablePANTHERPTHR33116:SF38OS01G0158850 PROTEINcoord: 37..143

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0031891.1Lag0031891.1mRNA