Lag0031709 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0031709
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	tRNA pseudouridine synthase
Location	chr11: 12524754 .. 12526596 (+)
RNA-Seq Expression	Lag0031709
Synteny	Lag0031709

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGAGGATTCCTGTTATGTCACAGAGCCCCCTTTCCCTTGCTTTAAATGGCGGTTGGTCATTGCTTATGACGGTACGCGATATGCAGGTCCGAGTTTCTTTTTCTTCTCTCCGATTGTTTATTCAGGCGAATGAATTAAACGATTTTGCATCCATATATCTACTTTATCTTTTTAGGTTAATGGTAATTCTAATCGGCTTAAGCTTTTGAGGTTAGTTGCTGTTGGATGTCTTTTCATCATCAGTATCATTTCGCCGCAAGATCACCCAAATTTGAGACTCGTATAAAAGTACTTGCCTACTTTTATTCCGTTTCGATCATGATTGTGTTTACTTGTTTTGGCTAGCTTTAAGTTATTTAGAGAGACATGATTTGGGTTCTGGTGTGAATTATGAGTTAACTCAGATATTGCATTCCTGCGCTTACTACTACAATTTTGAGGCTCTCTTCGTCTTTCTCCAAATTTTGATAAAATAACTTAATTTGGTGATACTAAATTAGGCTGGCAATATCAGCGGTCACCTCCAACCATCCAGTGCCTGATTGAAAATGCCTTGACTCGAGCAACAAAGCTTGAGAGGAAGGATCTCCGTTTAGTTGGTGCAAGCAGAACAGATACGGGAGTTCATGCCTGGGGTCAGGTCTGATGTGCTTTTTGGAGTTGGGTTTAACACATCCTTGGAAAACAATGCTTGCTGTTGCTTACAACAAGTTGAGGTTTCAGGTGGCACACTTTATTACGCCATTTAACTATGATAGCTTGGACAACGTTCATGCTGCTTTGAATGGTCTTCTTCCTGCGGATATAAGAGTTCGGGAGATTAGTCCTGCTGTGCCTGACTTTCATGCTCGGTTTTCTACAATAAGCAAGGTTTATCACTACAAGATATATAATGGCACCATCTTGGATCCATTTCAGCGGTGCTACACTTACCATTGCGTTTATAAACTCAATTATGCAGCCATGAGAGAAGCTGCAAATTATTTCATTGGAAAGCATGATTTTTCTGCTTTTGCAAATGCAGCACATAATGATCGAGTGGTAGATCCAGTGAAGGTCATTTTTCGTTTTGACGTCATAGAAATGGTAAAATTTTAAGGTTCTCTCTAGTCCAGTGATGTTTTTTCGATAATGTGTCTGTTTCTCATGAGTCTAGCGTGGTTAGTTCTGTATCCAACCCTTTTGGTATCTGTGTGAATCATTCTATTTTCAGCTTTATTCAAAAACTGAGGTTAAATGCCTAGCATGTGATCGTTTCTTTGTTCAGGGACCTCTTGTTCAGCTAGAAGTTGAGGGTTCTGGGTTCTTGTATAGACAAGTTCGGAATATGGTAATTATATTTGTTACACCCATCTTTTTAGTTGATTTCCCTTGTCCGACATTTTACTTAGTAAATGCTGGTCACTATAATAGTTTTATAGTAGGCCAATTTGAGCATAACTCAACTGGTCAAGATACTCTCGACCAAGAAGTTAAAGATTCGAATCTTCCTTGAACTTAAAAAAAATGACTTTAGTAGAAAGTAAACTTCCTGGAAGCGTAGATTTAAGTTTGTAAAATCTGGTTCATGCAACTGTAAGCATTTCTCTGGTTCTTTTGCAGGTTGCCTTGTTGATTCAAATTGGAAAGGAAGCAATTGCTCCTGATGTTGTTCCTAAGATATTGGCCTCTCGAGATCGCAAGGAGCTTGCTAAGTATGCTCCGTGCATTCCTCCGCAGGGGCTCTGTCTTATGAGTATTAATTATAAAGAGGACCATCTAAAGCTTCCATCTGGTTGCCCTGGGACTAGTTTTGGTAGGCGTCATAGTGTGAGCAAATGTAAGCTCCCTTTCTATTGA

mRNA sequence

ATGCAGAGGATTCCTGTTATGTCACAGAGCCCCCTTTCCCTTGCTTTAAATGGCGGTTGGTCATTGCTTATGACGGTTAATGGTAATTCTAATCGGCTTAAGCTTTTGAGGTTAGTTGCTGTTGGATGTCTTTTCATCATCAGCTGGCAATATCAGCGGTCACCTCCAACCATCCAGTGCCTGATTGAAAATGCCTTGACTCGAGCAACAAAGCTTGAGAGGAAGGATCTCCGTTTAGTTGGTGCAAGCAGAACAGATACGGGAGTTCATGCCTGGGGTCAGGTGGCACACTTTATTACGCCATTTAACTATGATAGCTTGGACAACGTTCATGCTGCTTTGAATGGTCTTCTTCCTGCGGATATAAGAGTTCGGGAGATTAGTCCTGCTGTGCCTGACTTTCATGCTCGGTTTTCTACAATAAGCAAGGTTTATCACTACAAGATATATAATGGCACCATCTTGGATCCATTTCAGCGGTGCTACACTTACCATTGCGTTTATAAACTCAATTATGCAGCCATGAGAGAAGCTGCAAATTATTTCATTGGAAAGCATGATTTTTCTGCTTTTGCAAATGCAGCACATAATGATCGAGTGGTAGATCCAGTGAAGGTCATTTTTCGTTTTGACGTCATAGAAATGGGACCTCTTGTTCAGCTAGAAGTTGAGGGTTCTGGGTTCTTGTATAGACAAGTTCGGAATATGGTTGCCTTGTTGATTCAAATTGGAAAGGAAGCAATTGCTCCTGATGTTGTTCCTAAGATATTGGCCTCTCGAGATCGCAAGGAGCTTGCTAAGTATGCTCCGTGCATTCCTCCGCAGGGGCTCTGTCTTATGAGTATTAATTATAAAGAGGACCATCTAAAGCTTCCATCTGGTTGCCCTGGGACTAGTTTTGGTAGGCGTCATAGTGTGAGCAAATGTAAGCTCCCTTTCTATTGA

Coding sequence (CDS)

ATGCAGAGGATTCCTGTTATGTCACAGAGCCCCCTTTCCCTTGCTTTAAATGGCGGTTGGTCATTGCTTATGACGGTTAATGGTAATTCTAATCGGCTTAAGCTTTTGAGGTTAGTTGCTGTTGGATGTCTTTTCATCATCAGCTGGCAATATCAGCGGTCACCTCCAACCATCCAGTGCCTGATTGAAAATGCCTTGACTCGAGCAACAAAGCTTGAGAGGAAGGATCTCCGTTTAGTTGGTGCAAGCAGAACAGATACGGGAGTTCATGCCTGGGGTCAGGTGGCACACTTTATTACGCCATTTAACTATGATAGCTTGGACAACGTTCATGCTGCTTTGAATGGTCTTCTTCCTGCGGATATAAGAGTTCGGGAGATTAGTCCTGCTGTGCCTGACTTTCATGCTCGGTTTTCTACAATAAGCAAGGTTTATCACTACAAGATATATAATGGCACCATCTTGGATCCATTTCAGCGGTGCTACACTTACCATTGCGTTTATAAACTCAATTATGCAGCCATGAGAGAAGCTGCAAATTATTTCATTGGAAAGCATGATTTTTCTGCTTTTGCAAATGCAGCACATAATGATCGAGTGGTAGATCCAGTGAAGGTCATTTTTCGTTTTGACGTCATAGAAATGGGACCTCTTGTTCAGCTAGAAGTTGAGGGTTCTGGGTTCTTGTATAGACAAGTTCGGAATATGGTTGCCTTGTTGATTCAAATTGGAAAGGAAGCAATTGCTCCTGATGTTGTTCCTAAGATATTGGCCTCTCGAGATCGCAAGGAGCTTGCTAAGTATGCTCCGTGCATTCCTCCGCAGGGGCTCTGTCTTATGAGTATTAATTATAAAGAGGACCATCTAAAGCTTCCATCTGGTTGCCCTGGGACTAGTTTTGGTAGGCGTCATAGTGTGAGCAAATGTAAGCTCCCTTTCTATTGA

Protein sequence

MQRIPVMSQSPLSLALNGGWSLLMTVNGNSNRLKLLRLVAVGCLFIISWQYQRSPPTIQCLIENALTRATKLERKDLRLVGASRTDTGVHAWGQVAHFITPFNYDSLDNVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNGTILDPFQRCYTYHCVYKLNYAAMREAANYFIGKHDFSAFANAAHNDRVVDPVKVIFRFDVIEMGPLVQLEVEGSGFLYRQVRNMVALLIQIGKEAIAPDVVPKILASRDRKELAKYAPCIPPQGLCLMSINYKEDHLKLPSGCPGTSFGRRHSVSKCKLPFY

Homology

[Close]

BLAST of Lag0031709 vs. NCBI nr
Match: XP_023549334.1 (uncharacterized protein LOC111807720 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 511.1 bits (1315), Expect = 6.6e-141
Identity = 241/266 (90.60%), Postives = 252/266 (94.74%), Query Frame = 0


Query: 49  WQYQRSPPTIQCLIENALTRATKLERKDLRLVGASRTDTGVHAWGQVAHFITPFNYDSLD 108
           WQYQRSPPTIQCLIE ALT AT+LERKDL LVGASRTDTGVHAWGQVAHFITPFNYDSLD
Sbjct: 70  WQYQRSPPTIQCLIEEALTGATRLERKDLHLVGASRTDTGVHAWGQVAHFITPFNYDSLD 129

Query: 109 NVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNGTILDPFQRCYTYHCVY 168
            +HAALNGLLPADIRVREISPAVPDFHARFST+SKVYHYKIYN  ILDPFQRCYTYHCVY
Sbjct: 130 RIHAALNGLLPADIRVREISPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVY 189

Query: 169 KLNYAAMREAANYFIGKHDFSAFANAAHNDRVVDPVKVIFRFDVIEMGPLVQLEVEGSGF 228
           KLNYAAM+EAANYF+GKHDFSAFANAAHNDRVV+PVKV+FRFDVIEMG L+QLEVEGSGF
Sbjct: 190 KLNYAAMKEAANYFVGKHDFSAFANAAHNDRVVNPVKVVFRFDVIEMGALIQLEVEGSGF 249

Query: 229 LYRQVRNMVALLIQIGKEAIAPDVVPKILASRDRKELAKYAPCIPPQGLCLMSINYKEDH 288
           LYRQVRNMVALL+QIGKEAI PDVVPKILA+RDRKELAKY  CIPP GLCL+ INYKEDH
Sbjct: 250 LYRQVRNMVALLLQIGKEAIPPDVVPKILATRDRKELAKYTTCIPPHGLCLVRINYKEDH 309

Query: 289 LKLPSGCPGTSFGRRHSVSKCKLPFY 315
           LKLPS CPGTSFGR HSVSKCKLPFY
Sbjct: 310 LKLPSDCPGTSFGRSHSVSKCKLPFY 335

[Close]

BLAST of Lag0031709 vs. NCBI nr
Match: XP_023549333.1 (uncharacterized protein LOC111807720 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 511.1 bits (1315), Expect = 6.6e-141
Identity = 241/266 (90.60%), Postives = 252/266 (94.74%), Query Frame = 0


Query: 49  WQYQRSPPTIQCLIENALTRATKLERKDLRLVGASRTDTGVHAWGQVAHFITPFNYDSLD 108
           WQYQRSPPTIQCLIE ALT AT+LERKDL LVGASRTDTGVHAWGQVAHFITPFNYDSLD
Sbjct: 72  WQYQRSPPTIQCLIEEALTGATRLERKDLHLVGASRTDTGVHAWGQVAHFITPFNYDSLD 131

Query: 109 NVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNGTILDPFQRCYTYHCVY 168
            +HAALNGLLPADIRVREISPAVPDFHARFST+SKVYHYKIYN  ILDPFQRCYTYHCVY
Sbjct: 132 RIHAALNGLLPADIRVREISPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVY 191

Query: 169 KLNYAAMREAANYFIGKHDFSAFANAAHNDRVVDPVKVIFRFDVIEMGPLVQLEVEGSGF 228
           KLNYAAM+EAANYF+GKHDFSAFANAAHNDRVV+PVKV+FRFDVIEMG L+QLEVEGSGF
Sbjct: 192 KLNYAAMKEAANYFVGKHDFSAFANAAHNDRVVNPVKVVFRFDVIEMGALIQLEVEGSGF 251

Query: 229 LYRQVRNMVALLIQIGKEAIAPDVVPKILASRDRKELAKYAPCIPPQGLCLMSINYKEDH 288
           LYRQVRNMVALL+QIGKEAI PDVVPKILA+RDRKELAKY  CIPP GLCL+ INYKEDH
Sbjct: 252 LYRQVRNMVALLLQIGKEAIPPDVVPKILATRDRKELAKYTTCIPPHGLCLVRINYKEDH 311

Query: 289 LKLPSGCPGTSFGRRHSVSKCKLPFY 315
           LKLPS CPGTSFGR HSVSKCKLPFY
Sbjct: 312 LKLPSDCPGTSFGRSHSVSKCKLPFY 337

[Close]

BLAST of Lag0031709 vs. NCBI nr
Match: XP_023549335.1 (uncharacterized protein LOC111807720 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 511.1 bits (1315), Expect = 6.6e-141
Identity = 241/266 (90.60%), Postives = 252/266 (94.74%), Query Frame = 0


Query: 49  WQYQRSPPTIQCLIENALTRATKLERKDLRLVGASRTDTGVHAWGQVAHFITPFNYDSLD 108
           WQYQRSPPTIQCLIE ALT AT+LERKDL LVGASRTDTGVHAWGQVAHFITPFNYDSLD
Sbjct: 70  WQYQRSPPTIQCLIEEALTGATRLERKDLHLVGASRTDTGVHAWGQVAHFITPFNYDSLD 129

Query: 109 NVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNGTILDPFQRCYTYHCVY 168
            +HAALNGLLPADIRVREISPAVPDFHARFST+SKVYHYKIYN  ILDPFQRCYTYHCVY
Sbjct: 130 RIHAALNGLLPADIRVREISPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVY 189

Query: 169 KLNYAAMREAANYFIGKHDFSAFANAAHNDRVVDPVKVIFRFDVIEMGPLVQLEVEGSGF 228
           KLNYAAM+EAANYF+GKHDFSAFANAAHNDRVV+PVKV+FRFDVIEMG L+QLEVEGSGF
Sbjct: 190 KLNYAAMKEAANYFVGKHDFSAFANAAHNDRVVNPVKVVFRFDVIEMGALIQLEVEGSGF 249

Query: 229 LYRQVRNMVALLIQIGKEAIAPDVVPKILASRDRKELAKYAPCIPPQGLCLMSINYKEDH 288
           LYRQVRNMVALL+QIGKEAI PDVVPKILA+RDRKELAKY  CIPP GLCL+ INYKEDH
Sbjct: 250 LYRQVRNMVALLLQIGKEAIPPDVVPKILATRDRKELAKYTTCIPPHGLCLVRINYKEDH 309

Query: 289 LKLPSGCPGTSFGRRHSVSKCKLPFY 315
           LKLPS CPGTSFGR HSVSKCKLPFY
Sbjct: 310 LKLPSDCPGTSFGRSHSVSKCKLPFY 335

[Close]

BLAST of Lag0031709 vs. NCBI nr
Match: XP_023549337.1 (uncharacterized protein LOC111807720 isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 511.1 bits (1315), Expect = 6.6e-141
Identity = 241/266 (90.60%), Postives = 252/266 (94.74%), Query Frame = 0


Query: 49  WQYQRSPPTIQCLIENALTRATKLERKDLRLVGASRTDTGVHAWGQVAHFITPFNYDSLD 108
           WQYQRSPPTIQCLIE ALT AT+LERKDL LVGASRTDTGVHAWGQVAHFITPFNYDSLD
Sbjct: 68  WQYQRSPPTIQCLIEEALTGATRLERKDLHLVGASRTDTGVHAWGQVAHFITPFNYDSLD 127

Query: 109 NVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNGTILDPFQRCYTYHCVY 168
            +HAALNGLLPADIRVREISPAVPDFHARFST+SKVYHYKIYN  ILDPFQRCYTYHCVY
Sbjct: 128 RIHAALNGLLPADIRVREISPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVY 187

Query: 169 KLNYAAMREAANYFIGKHDFSAFANAAHNDRVVDPVKVIFRFDVIEMGPLVQLEVEGSGF 228
           KLNYAAM+EAANYF+GKHDFSAFANAAHNDRVV+PVKV+FRFDVIEMG L+QLEVEGSGF
Sbjct: 188 KLNYAAMKEAANYFVGKHDFSAFANAAHNDRVVNPVKVVFRFDVIEMGALIQLEVEGSGF 247

Query: 229 LYRQVRNMVALLIQIGKEAIAPDVVPKILASRDRKELAKYAPCIPPQGLCLMSINYKEDH 288
           LYRQVRNMVALL+QIGKEAI PDVVPKILA+RDRKELAKY  CIPP GLCL+ INYKEDH
Sbjct: 248 LYRQVRNMVALLLQIGKEAIPPDVVPKILATRDRKELAKYTTCIPPHGLCLVRINYKEDH 307

Query: 289 LKLPSGCPGTSFGRRHSVSKCKLPFY 315
           LKLPS CPGTSFGR HSVSKCKLPFY
Sbjct: 308 LKLPSDCPGTSFGRSHSVSKCKLPFY 333

[Close]

BLAST of Lag0031709 vs. NCBI nr
Match: XP_022959477.1 (uncharacterized protein LOC111460439 isoform X1 [Cucurbita moschata])

HSP 1 Score: 510.0 bits (1312), Expect = 1.5e-140
Identity = 239/266 (89.85%), Postives = 252/266 (94.74%), Query Frame = 0


Query: 49  WQYQRSPPTIQCLIENALTRATKLERKDLRLVGASRTDTGVHAWGQVAHFITPFNYDSLD 108
           WQYQRSPPTIQCL+E ALT AT+LERKDL LVGASRTDTGVHAWGQVAHFITPFNYDSLD
Sbjct: 71  WQYQRSPPTIQCLVEEALTGATRLERKDLHLVGASRTDTGVHAWGQVAHFITPFNYDSLD 130

Query: 109 NVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNGTILDPFQRCYTYHCVY 168
            +HAALNGLLPADIRVRE+SPAVPDFHARFST+SKVYHYKIYN  ILDPFQRCYTYHCVY
Sbjct: 131 RIHAALNGLLPADIRVREMSPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVY 190

Query: 169 KLNYAAMREAANYFIGKHDFSAFANAAHNDRVVDPVKVIFRFDVIEMGPLVQLEVEGSGF 228
           KLNYAAM+EAANYF+GKHDFSAFAN AHNDRVV+PVKVIFRFDVIEMG L+QLEVEGSGF
Sbjct: 191 KLNYAAMKEAANYFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVIEMGALIQLEVEGSGF 250

Query: 229 LYRQVRNMVALLIQIGKEAIAPDVVPKILASRDRKELAKYAPCIPPQGLCLMSINYKEDH 288
           LYRQVRNMVALL+QIGKEAI PD+VPKILA+RDRKELAKY  CIPPQGLCL+ INYKEDH
Sbjct: 251 LYRQVRNMVALLLQIGKEAIPPDIVPKILATRDRKELAKYTTCIPPQGLCLVRINYKEDH 310

Query: 289 LKLPSGCPGTSFGRRHSVSKCKLPFY 315
           LKLPS CPGTSFGR HSVSKCKLPFY
Sbjct: 311 LKLPSDCPGTSFGRSHSVSKCKLPFY 336

[Close]

BLAST of Lag0031709 vs. ExPASy Swiss-Prot
Match: Q6MEE7 (tRNA pseudouridine synthase A 1 OS=Protochlamydia amoebophila (strain UWE25) OX=264201 GN=truA1 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.4e-45
Identity = 95/241 (39.42%), Postives = 151/241 (62.66%), Query Frame = 0


Query: 49  WQYQRSPPTIQCLIENALTRATKLERKDLRLVGASRTDTGVHAWGQVAHFITPFNYDSLD 108
           WQ Q +  +IQ  I+ AL     L+++ + LVG+ RTD GVHA GQVAHF    +Y  L 
Sbjct: 18  WQIQPNASSIQQKIQEAL--CILLKKEKVVLVGSGRTDAGVHAKGQVAHFHFQ-DYIDLS 77

Query: 109 NVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNGTILDPFQRCYTYHCVY 168
            +H +LNGLLP DIR++ + P  P FH+++S I K YHY ++   ++DPFQR Y++H   
Sbjct: 78  RLHVSLNGLLPRDIRIKAVEPVSPRFHSQYSAIRKEYHYYLHLNKVMDPFQRLYSWHFQR 137

Query: 169 KLNYAAMREAANYFIGKHDFSAFANAAHNDRVV-DPVKVIFRFDVIEMGPLVQLEVEGSG 228
           K++   +++AA  F G HDF++FAN AH      +PV+ ++R D+      ++LE EG G
Sbjct: 138 KIDVNILKKAAILFTGTHDFTSFANEAHRGTAAKNPVRTLYRLDIKPNEGGLRLEFEGDG 197

Query: 229 FLYRQVRNMVALLIQIGKEAIAPDVVPKILASRDRKELAKYAPCIPPQGLCLMSINYKED 288
           FLY+ VRN+V  L+ +     A + + +I A+++R++ +  A   PP+GL L+ + Y+ +
Sbjct: 198 FLYKMVRNIVGTLMDVASHKRAIEEINQIFAAKNRRQASLAA---PPEGLFLIQVFYENE 252

[Close]

BLAST of Lag0031709 vs. ExPASy Swiss-Prot
Match: B1I1B5 (tRNA pseudouridine synthase A OS=Desulforudis audaxviator (strain MP104C) OX=477974 GN=truA PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.1e-42
Identity = 96/229 (41.92%), Postives = 130/229 (56.77%), Query Frame = 0


Query: 56  PTIQCLIENALTRATKLERKDLRLVGASRTDTGVHAWGQVAHFITPFNYDSLDNVHAALN 115
           PTIQ  +E  L    +L    L++ GASRTD GVHA GQV +F+T       + + AALN
Sbjct: 27  PTIQETLERCL---AELSGAALKVTGASRTDAGVHARGQVVNFVTGRWGIPTERIPAALN 86

Query: 116 GLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNGTILDPFQRCYTYHCVYKLNYAAM 175
           G+LP DI   +      DFHAR+S ++K Y Y +YN  +  PFQR Y+ H    L+  AM
Sbjct: 87  GVLPGDIAALDAREVPADFHARYSAVAKTYSYTLYNHPVRSPFQRLYSLHVPRALDLRAM 146

Query: 176 REAANYFIGKHDFSAFANAAHNDRVVDPVKVIFRFDVIEMGPLVQLEVEGSGFLYRQVRN 235
           R AA + +G+HDFS F  A     V   V+ + R D+    PLV+L     GFLY  VR 
Sbjct: 147 RLAARHLMGRHDFSTFQAAGR--PVQSAVRTLTRADIEAQAPLVRLVFRADGFLYNMVRI 206

Query: 236 MVALLIQIGKEAIAPDVVPKILASRDRKELAKYAPCIPPQGLCLMSINY 285
           M   L+++G E + P+ +P I+AS DR   A+  P +PP GLCL  + Y
Sbjct: 207 MAGTLLEVGLERLDPEALPDIIASGDR---ARAGPTVPPHGLCLEEVEY 247

[Close]

BLAST of Lag0031709 vs. ExPASy Swiss-Prot
Match: A4J151 (tRNA pseudouridine synthase A OS=Desulfotomaculum reducens (strain MI-1) OX=349161 GN=truA PE=3 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.2e-39
Identity = 92/228 (40.35%), Postives = 132/228 (57.89%), Query Frame = 0


Query: 57  TIQCLIENALTRATKLERKDLRLVGASRTDTGVHAWGQVAHFITPFNYDSLDNVHAALNG 116
           TIQ  +E AL   + + +  ++++GA RTD GVHA GQV +F +       +    ALN 
Sbjct: 28  TIQEALEKAL---STIAQTPIQVIGAGRTDAGVHAQGQVVNFRSEKWPVPAEKAPLALNV 87

Query: 117 LLPADIRVREISPAVPDFHARFSTISKVYHYKIYNGTILDPFQRCYTYHCVYKLNYAAMR 176
           LLP DI+V +      DFHARFS ++K Y Y IY+  ++ PF R Y YH   +L+  AM+
Sbjct: 88  LLPGDIKVVKAEEVPMDFHARFSAVAKTYRYSIYHHRVMSPFHRYYCYHEPRRLDVNAMQ 147

Query: 177 EAANYFIGKHDFSAFANAAHNDRVVDPVKVIFRFDVIEMGPLVQLEVEGSGFLYRQVRNM 236
           E A Y +G +DF +F   A    V D ++ I+R D+IE  P++ L + G+GFLY  VR +
Sbjct: 148 EGAAYLLGTYDFKSF--QAQGTPVKDTIRTIYRADIIEDAPVINLYLRGNGFLYNMVRII 207

Query: 237 VALLIQIGKEAIAPDVVPKILASRDRKELAKYAPCIPPQGLCLMSINY 285
              L+ IG   I P+ + KI+ S++R      A   PPQGLCLM + Y
Sbjct: 208 TGTLLNIGFGKIKPEDMVKIIESKNRTLAGTTA---PPQGLCLMEVEY 247

[Close]

BLAST of Lag0031709 vs. ExPASy Swiss-Prot
Match: Q8R7Y7 (tRNA pseudouridine synthase A OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=truA PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 9.8e-39
Identity = 98/236 (41.53%), Postives = 135/236 (57.20%), Query Frame = 0


Query: 49  WQYQRSPPTIQCLIENALTRATKLERKDLRLVGASRTDTGVHAWGQVAHFITPFNYDSLD 108
           WQYQ++  T+Q ++E A+ + T    + + L+G+SRTDTGVHA  QVA+F T       +
Sbjct: 14  WQYQKNAITVQEVLEKAIEKVT---GEKVNLIGSSRTDTGVHALYQVANFKTKTKIPP-E 73

Query: 109 NVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNGTILDPFQRCYTYHCVY 168
            +  ALN +LP D+ V +       FHAR+S  SK Y Y I N     P  R Y +H  Y
Sbjct: 74  KLPYALNAVLPDDVVVVKAKEVDKSFHARYSARSKRYRYLILNRQFPMPTMRNYCWHVPY 133

Query: 169 KLNYAAMREAANYFIGKHDFSAFANAAHNDRVVDPVKVIFRFDVIEMGPLVQLEVEGSGF 228
            L+  AM++AA +F G HDFSAF   A  ++ V+PVK IF   V + G L+++EVE  GF
Sbjct: 134 PLDVEAMKKAAFFFRGTHDFSAF--KASGNKKVNPVKTIFDLTVEKEGDLIKIEVEADGF 193

Query: 229 LYRQVRNMVALLIQIGKEAIAPDVVPKILASRDRKELAKYAPCIPPQGLCLMSINY 285
           LY  VR +V  L+ +G   I    +P I+ S+DR    K     PPQGL L+ I Y
Sbjct: 194 LYNMVRIIVGTLVYVGLGKIKAGEIPAIIESKDR---TKAGITAPPQGLYLVRIVY 240

[Close]

BLAST of Lag0031709 vs. ExPASy Swiss-Prot
Match: A3DJK8 (tRNA pseudouridine synthase A OS=Hungateiclostridium thermocellum (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372) OX=203119 GN=truA PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.4e-38
Identity = 95/236 (40.25%), Postives = 133/236 (56.36%), Query Frame = 0


Query: 49  WQYQRSPPTIQCLIENALTRATKLERKDLRLVGASRTDTGVHAWGQVAHFITPFNYDSLD 108
           WQ Q++  T+Q  IE A+   T  E+ D  L+GASRTD GVHA GQVA+FIT       D
Sbjct: 18  WQKQKNAKTVQDTIERAIKGLTG-EKVD--LIGASRTDFGVHALGQVANFITNSGIPG-D 77

Query: 109 NVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNGTILDPFQRCYTYHCVY 168
               ALN +LP DI ++E      DFHAR+    K Y Y IYN        R  TYH  +
Sbjct: 78  RFSYALNRMLPDDIVIKESQEVDMDFHARYKAKGKRYRYLIYNSQFPSALLRHRTYHVSH 137

Query: 169 KLNYAAMREAANYFIGKHDFSAFANAAHNDRVVDPVKVIFRFDVIEMGPLVQLEVEGSGF 228
           KL++ +M+ AA+YF+G HDFSAF ++  + +    V+ I    +     +V+ E+ G GF
Sbjct: 138 KLDFESMQRAASYFLGTHDFSAFRSSGSSAKT--SVRTITDVSLEREDKIVKFEIAGDGF 197

Query: 229 LYRQVRNMVALLIQIGKEAIAPDVVPKILASRDRKELAKYAPCIPPQGLCLMSINY 285
           LY  VR +V  L+++G   I  D +P+I+ SR RK   + AP    +GL L+ + Y
Sbjct: 198 LYNMVRIIVGTLMEVGIGKIRADEIPQIIESRKRKRAGRTAPA---EGLYLVEVYY 244

[Close]

BLAST of Lag0031709 vs. ExPASy TrEMBL
Match: A0A6J1H621 (tRNA pseudouridine synthase OS=Cucurbita moschata OX=3662 GN=LOC111460439 PE=3 SV=1)

HSP 1 Score: 510.0 bits (1312), Expect = 7.1e-141
Identity = 239/266 (89.85%), Postives = 252/266 (94.74%), Query Frame = 0


Query: 49  WQYQRSPPTIQCLIENALTRATKLERKDLRLVGASRTDTGVHAWGQVAHFITPFNYDSLD 108
           WQYQRSPPTIQCL+E ALT AT+LERKDL LVGASRTDTGVHAWGQVAHFITPFNYDSLD
Sbjct: 69  WQYQRSPPTIQCLVEEALTGATRLERKDLHLVGASRTDTGVHAWGQVAHFITPFNYDSLD 128

Query: 109 NVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNGTILDPFQRCYTYHCVY 168
            +HAALNGLLPADIRVRE+SPAVPDFHARFST+SKVYHYKIYN  ILDPFQRCYTYHCVY
Sbjct: 129 RIHAALNGLLPADIRVREMSPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVY 188

Query: 169 KLNYAAMREAANYFIGKHDFSAFANAAHNDRVVDPVKVIFRFDVIEMGPLVQLEVEGSGF 228
           KLNYAAM+EAANYF+GKHDFSAFAN AHNDRVV+PVKVIFRFDVIEMG L+QLEVEGSGF
Sbjct: 189 KLNYAAMKEAANYFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVIEMGALIQLEVEGSGF 248

Query: 229 LYRQVRNMVALLIQIGKEAIAPDVVPKILASRDRKELAKYAPCIPPQGLCLMSINYKEDH 288
           LYRQVRNMVALL+QIGKEAI PD+VPKILA+RDRKELAKY  CIPPQGLCL+ INYKEDH
Sbjct: 249 LYRQVRNMVALLLQIGKEAIPPDIVPKILATRDRKELAKYTTCIPPQGLCLVRINYKEDH 308

Query: 289 LKLPSGCPGTSFGRRHSVSKCKLPFY 315
           LKLPS CPGTSFGR HSVSKCKLPFY
Sbjct: 309 LKLPSDCPGTSFGRSHSVSKCKLPFY 334

[Close]

BLAST of Lag0031709 vs. ExPASy TrEMBL
Match: A0A6J1H4M7 (tRNA pseudouridine synthase OS=Cucurbita moschata OX=3662 GN=LOC111460439 PE=3 SV=1)

HSP 1 Score: 510.0 bits (1312), Expect = 7.1e-141
Identity = 239/266 (89.85%), Postives = 252/266 (94.74%), Query Frame = 0


Query: 49  WQYQRSPPTIQCLIENALTRATKLERKDLRLVGASRTDTGVHAWGQVAHFITPFNYDSLD 108
           WQYQRSPPTIQCL+E ALT AT+LERKDL LVGASRTDTGVHAWGQVAHFITPFNYDSLD
Sbjct: 71  WQYQRSPPTIQCLVEEALTGATRLERKDLHLVGASRTDTGVHAWGQVAHFITPFNYDSLD 130

Query: 109 NVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNGTILDPFQRCYTYHCVY 168
            +HAALNGLLPADIRVRE+SPAVPDFHARFST+SKVYHYKIYN  ILDPFQRCYTYHCVY
Sbjct: 131 RIHAALNGLLPADIRVREMSPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVY 190

Query: 169 KLNYAAMREAANYFIGKHDFSAFANAAHNDRVVDPVKVIFRFDVIEMGPLVQLEVEGSGF 228
           KLNYAAM+EAANYF+GKHDFSAFAN AHNDRVV+PVKVIFRFDVIEMG L+QLEVEGSGF
Sbjct: 191 KLNYAAMKEAANYFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVIEMGALIQLEVEGSGF 250

Query: 229 LYRQVRNMVALLIQIGKEAIAPDVVPKILASRDRKELAKYAPCIPPQGLCLMSINYKEDH 288
           LYRQVRNMVALL+QIGKEAI PD+VPKILA+RDRKELAKY  CIPPQGLCL+ INYKEDH
Sbjct: 251 LYRQVRNMVALLLQIGKEAIPPDIVPKILATRDRKELAKYTTCIPPQGLCLVRINYKEDH 310

Query: 289 LKLPSGCPGTSFGRRHSVSKCKLPFY 315
           LKLPS CPGTSFGR HSVSKCKLPFY
Sbjct: 311 LKLPSDCPGTSFGRSHSVSKCKLPFY 336

[Close]

BLAST of Lag0031709 vs. ExPASy TrEMBL
Match: A0A6J1L0L1 (tRNA pseudouridine synthase OS=Cucurbita maxima OX=3661 GN=LOC111499282 PE=3 SV=1)

HSP 1 Score: 508.1 bits (1307), Expect = 2.7e-140
Identity = 241/266 (90.60%), Postives = 250/266 (93.98%), Query Frame = 0


Query: 49  WQYQRSPPTIQCLIENALTRATKLERKDLRLVGASRTDTGVHAWGQVAHFITPFNYDSLD 108
           WQYQRSPPTIQCLIE ALT AT+LERKDL LVGASRTD GVHAWGQVAHFITPFNYDSLD
Sbjct: 68  WQYQRSPPTIQCLIEEALTGATRLERKDLHLVGASRTDKGVHAWGQVAHFITPFNYDSLD 127

Query: 109 NVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNGTILDPFQRCYTYHCVY 168
            +HAALNGLLPADIRVREISPAVPDFHARFST+SKVYHYKIYN  ILDPFQRCYTYHCVY
Sbjct: 128 RIHAALNGLLPADIRVREISPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVY 187

Query: 169 KLNYAAMREAANYFIGKHDFSAFANAAHNDRVVDPVKVIFRFDVIEMGPLVQLEVEGSGF 228
           KLNYAAM+EAANYF+GKHDFSAFAN AHNDRVV+PVKVIFRFDVIEMG L+QLEVEGSGF
Sbjct: 188 KLNYAAMKEAANYFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVIEMGALIQLEVEGSGF 247

Query: 229 LYRQVRNMVALLIQIGKEAIAPDVVPKILASRDRKELAKYAPCIPPQGLCLMSINYKEDH 288
           LYRQVRNMVALL+QIGKEAI PDVVPKILASRDRK LAKY  CIPPQGLCL+ INYKEDH
Sbjct: 248 LYRQVRNMVALLLQIGKEAIPPDVVPKILASRDRKVLAKYTTCIPPQGLCLVRINYKEDH 307

Query: 289 LKLPSGCPGTSFGRRHSVSKCKLPFY 315
           LKLPS CPGTSFGR HSVSKCKLPFY
Sbjct: 308 LKLPSDCPGTSFGRSHSVSKCKLPFY 333

[Close]

BLAST of Lag0031709 vs. ExPASy TrEMBL
Match: A0A6J1L2M8 (tRNA pseudouridine synthase OS=Cucurbita maxima OX=3661 GN=LOC111499282 PE=3 SV=1)

HSP 1 Score: 508.1 bits (1307), Expect = 2.7e-140
Identity = 241/266 (90.60%), Postives = 250/266 (93.98%), Query Frame = 0


Query: 49  WQYQRSPPTIQCLIENALTRATKLERKDLRLVGASRTDTGVHAWGQVAHFITPFNYDSLD 108
           WQYQRSPPTIQCLIE ALT AT+LERKDL LVGASRTD GVHAWGQVAHFITPFNYDSLD
Sbjct: 70  WQYQRSPPTIQCLIEEALTGATRLERKDLHLVGASRTDKGVHAWGQVAHFITPFNYDSLD 129

Query: 109 NVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNGTILDPFQRCYTYHCVY 168
            +HAALNGLLPADIRVREISPAVPDFHARFST+SKVYHYKIYN  ILDPFQRCYTYHCVY
Sbjct: 130 RIHAALNGLLPADIRVREISPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVY 189

Query: 169 KLNYAAMREAANYFIGKHDFSAFANAAHNDRVVDPVKVIFRFDVIEMGPLVQLEVEGSGF 228
           KLNYAAM+EAANYF+GKHDFSAFAN AHNDRVV+PVKVIFRFDVIEMG L+QLEVEGSGF
Sbjct: 190 KLNYAAMKEAANYFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVIEMGALIQLEVEGSGF 249

Query: 229 LYRQVRNMVALLIQIGKEAIAPDVVPKILASRDRKELAKYAPCIPPQGLCLMSINYKEDH 288
           LYRQVRNMVALL+QIGKEAI PDVVPKILASRDRK LAKY  CIPPQGLCL+ INYKEDH
Sbjct: 250 LYRQVRNMVALLLQIGKEAIPPDVVPKILASRDRKVLAKYTTCIPPQGLCLVRINYKEDH 309

Query: 289 LKLPSGCPGTSFGRRHSVSKCKLPFY 315
           LKLPS CPGTSFGR HSVSKCKLPFY
Sbjct: 310 LKLPSDCPGTSFGRSHSVSKCKLPFY 335

[Close]

BLAST of Lag0031709 vs. ExPASy TrEMBL
Match: A0A1S3C7H4 (tRNA pseudouridine synthase OS=Cucumis melo OX=3656 GN=LOC103497746 PE=3 SV=1)

HSP 1 Score: 503.4 bits (1295), Expect = 6.6e-139
Identity = 248/314 (78.98%), Postives = 267/314 (85.03%), Query Frame = 0


Query: 1   MQRIPVMSQSPLSLALNGGWSLLMTVNGNSNRLKLLRLVAVGCLFIISWQYQRSPPTIQC 60
           M+RIP++SQSPLS A NGG S LMTV                         QRSPPTIQC
Sbjct: 13  MRRIPLISQSPLSPASNGGCSSLMTV----------------------LDMQRSPPTIQC 72

Query: 61  LIENALTRATKLERKDLRLVGASRTDTGVHAWGQVAHFITPFNYDSLDNVHAALNGLLPA 120
           LIE AL  ATKLERKDL LVGASRTD GVHAWGQVAHF+TPFNYDSL++VHAALNGLLP 
Sbjct: 73  LIEEALIGATKLERKDLHLVGASRTDKGVHAWGQVAHFVTPFNYDSLESVHAALNGLLPV 132

Query: 121 DIRVREISPAVPDFHARFSTISKVYHYKIYNGTILDPFQRCYTYHCVYKLNYAAMREAAN 180
           DIRVRE+SPA PDFHARFST+SKVYHYKIYNGTI+DPFQRCYTYHCVYKLNYAAM+EAAN
Sbjct: 133 DIRVREMSPAAPDFHARFSTLSKVYHYKIYNGTIMDPFQRCYTYHCVYKLNYAAMKEAAN 192

Query: 181 YFIGKHDFSAFANAAHNDRVVDPVKVIFRFDVIEMGPLVQLEVEGSGFLYRQVRNMVALL 240
           YF+GKHDFSAF NAAHN+RVV+PVKVIFRFDVIEMG LVQLEVEGSGFLYRQVRNMV LL
Sbjct: 193 YFVGKHDFSAFTNAAHNNRVVNPVKVIFRFDVIEMGALVQLEVEGSGFLYRQVRNMVGLL 252

Query: 241 IQIGKEAIAPDVVPKILASRDRKELAKYAPCIPPQGLCLMSINYKEDHLKLPSGCPGTSF 300
           +QIGKEA+ P+VVPKILASRDRKELAKYA  +PPQGLCL+SINYKEDHLKLPS CPGTS 
Sbjct: 253 VQIGKEALPPEVVPKILASRDRKELAKYASGVPPQGLCLVSINYKEDHLKLPSDCPGTSL 304

Query: 301 GRRHSVSKCKLPFY 315
           GR  SV KCK+PFY
Sbjct: 313 GRSRSVGKCKVPFY 304

[Close]

BLAST of Lag0031709 vs. TAIR 10
Match: AT3G06950.1 (Pseudouridine synthase family protein )

HSP 1 Score: 398.3 bits (1022), Expect = 5.8e-111
Identity = 189/267 (70.79%), Postives = 218/267 (81.65%), Query Frame = 0


Query: 49  WQYQRSPPTIQCLIENALTRATKLERKDLRLVGASRTDTGVHAWGQVAHFITPFNYDSLD 108
           WQYQ SPPTIQ ++E AL + T+L RK+L+L+GA RTD GVHAWGQVAHF+TPFNY SLD
Sbjct: 57  WQYQESPPTIQSMLEKALIQITELGRKELQLIGAGRTDAGVHAWGQVAHFVTPFNYTSLD 116

Query: 109 NVHAALNGLLPADIRVREISPAVPDFHARFSTISKVYHYKIYNGTILDPFQRCYTYHCVY 168
           + HAALNGLLP DIRVRE+S AVP+FHARFS  SKVY Y+IYN T +DPFQR + YHC Y
Sbjct: 117 SFHAALNGLLPKDIRVRELSAAVPEFHARFSASSKVYRYQIYNDTFMDPFQRHWAYHCAY 176

Query: 169 KLNYAAMREAANYFIGKHDFSAFANAAHNDRVVDPVKVIFRFDVIEMGPLVQLEVEGSGF 228
           KLN + MREAAN F+GKHDFSAFANA   D V DP+K I RFDVI+MG L+QLEVEGSGF
Sbjct: 177 KLNASKMREAANLFVGKHDFSAFANATREDGVPDPLKTISRFDVIQMGSLLQLEVEGSGF 236

Query: 229 LYRQVRNMVALLIQIGKEAIAPDVVPKILASRDRKELAKYAPC-IPPQGLCLMSINYKED 288
           LYRQVRNMVALLIQIGKEA+  D+VP IL ++DR+ LAKY      P GLCL+S+ YKED
Sbjct: 237 LYRQVRNMVALLIQIGKEALDSDIVPMILETKDRRVLAKYTSLPASPHGLCLVSVKYKED 296

Query: 289 HLKLPSGCPGTSFGRRHSVSKCKLPFY 315
           HLKLP  CP TS GR H+++KCKLPFY
Sbjct: 297 HLKLPLDCPVTSSGRHHTITKCKLPFY 323

[Close]

BLAST of Lag0031709 vs. TAIR 10
Match: AT1G34150.1 (Pseudouridine synthase family protein )

HSP 1 Score: 77.4 bits (189), Expect = 2.3e-14
Identity = 79/263 (30.04%), Postives = 108/263 (41.06%), Query Frame = 0


Query: 30  SNRLKLLRLVAVGCLFIISWQYQRSPPTIQCLIENALTRATKL--ERKDLRLVGASRTDT 89
           S R   L+++  G  F       +  P+I+  +  AL R   L  ++KD       RTD 
Sbjct: 88  SKRYVALKIMYFGKRFYGFSAEAQMEPSIESEVFKALERTRLLVGDKKDSCYSRCGRTDK 147

Query: 90  GVHAWGQVAHFITPFNY-----DSLDNVHA------------ALNGLLPADIRVREISPA 149
           GV + GQV              DS   V+              LN  LP DIRV   SPA
Sbjct: 148 GVSSTGQVIALFLRSRLKSPPGDSKAQVNGRTGERPEYDYVRVLNRALPDDIRVIGWSPA 207

Query: 150 VPDFHARFSTISKVYHYKIYNGTILDPFQRCYTYHCVYKLNYAAMREAANYFIGKHDFSA 209
             DFHARFS  ++ Y Y  +                   LN +AM  A   FIG+HDF  
Sbjct: 208 PIDFHARFSCYAREYKYFFWR----------------QNLNLSAMDFAGKKFIGEHDFRN 267

Query: 210 F-----ANAAHNDRVVDPVKVIFRFDVIEMGPLVQLEVEGSGFLYRQVRNMVALLIQIGK 269
           F     AN     R V   +V    +  E   L    + GS FL+ Q+R MVA+L  IG+
Sbjct: 268 FCKMDVANVHCYTRRVTFFEVSPCQNSHEGDQLCTFTMRGSAFLWHQIRCMVAVLFMIGQ 327

The following BLAST results are available for this feature:

BLAST of Lag0031709 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023549334.1	6.6e-141	90.60	uncharacterized protein LOC111807720 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023549333.1	6.6e-141	90.60	uncharacterized protein LOC111807720 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023549335.1	6.6e-141	90.60	uncharacterized protein LOC111807720 isoform X3 [Cucurbita pepo subsp. pepo]	[more]
XP_023549337.1	6.6e-141	90.60	uncharacterized protein LOC111807720 isoform X4 [Cucurbita pepo subsp. pepo]	[more]
XP_022959477.1	1.5e-140	89.85	uncharacterized protein LOC111460439 isoform X1 [Cucurbita moschata]	[more]

BLAST of Lag0031709 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6MEE7	1.4e-45	39.42	tRNA pseudouridine synthase A 1 OS=Protochlamydia amoebophila (strain UWE25) OX=...	[more]
B1I1B5	1.1e-42	41.92	tRNA pseudouridine synthase A OS=Desulforudis audaxviator (strain MP104C) OX=477...	[more]
A4J151	1.2e-39	40.35	tRNA pseudouridine synthase A OS=Desulfotomaculum reducens (strain MI-1) OX=3491...	[more]
Q8R7Y7	9.8e-39	41.53	tRNA pseudouridine synthase A OS=Caldanaerobacter subterraneus subsp. tengcongen...	[more]
A3DJK8	6.4e-38	40.25	tRNA pseudouridine synthase A OS=Hungateiclostridium thermocellum (strain ATCC 2...	[more]

BLAST of Lag0031709 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H621	7.1e-141	89.85	tRNA pseudouridine synthase OS=Cucurbita moschata OX=3662 GN=LOC111460439 PE=3 S...	[more]
A0A6J1H4M7	7.1e-141	89.85	tRNA pseudouridine synthase OS=Cucurbita moschata OX=3662 GN=LOC111460439 PE=3 S...	[more]
A0A6J1L0L1	2.7e-140	90.60	tRNA pseudouridine synthase OS=Cucurbita maxima OX=3661 GN=LOC111499282 PE=3 SV=...	[more]
A0A6J1L2M8	2.7e-140	90.60	tRNA pseudouridine synthase OS=Cucurbita maxima OX=3661 GN=LOC111499282 PE=3 SV=...	[more]
A0A1S3C7H4	6.6e-139	78.98	tRNA pseudouridine synthase OS=Cucumis melo OX=3656 GN=LOC103497746 PE=3 SV=1	[more]

BLAST of Lag0031709 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G06950.1	5.8e-111	70.79	Pseudouridine synthase family protein	[more]
AT1G34150.1	2.3e-14	30.04	Pseudouridine synthase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020095	Pseudouridine synthase I, TruA, C-terminal	GENE3D	3.30.70.660		coord: 141..283 e-value: 1.1E-38 score: 134.1
IPR020097	Pseudouridine synthase I, TruA, alpha/beta domain	PFAM	PF01416	PseudoU_synth_1	coord: 178..284 e-value: 9.1E-25 score: 87.2
IPR020094	Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminal	GENE3D	3.30.70.580		coord: 47..140 e-value: 1.4E-21 score: 78.8
IPR001406	Pseudouridine synthase I, TruA	TIGRFAM	TIGR00071	TIGR00071	coord: 48..270 e-value: 2.2E-49 score: 166.2
IPR001406	Pseudouridine synthase I, TruA	PANTHER	PTHR11142	PSEUDOURIDYLATE SYNTHASE	coord: 49..298
IPR001406	Pseudouridine synthase I, TruA	HAMAP	MF_00171	TruA	coord: 32..284 score: 29.177597
IPR001406	Pseudouridine synthase I, TruA	CDD	cd02570	PseudoU_synth_EcTruA	coord: 49..284 e-value: 8.28862E-99 score: 288.988
None	No IPR available	PIRSR	PIRSR001430-2	PIRSR001430-2	coord: 74..279 e-value: 3.1E-62 score: 207.7
None	No IPR available	PANTHER	PTHR11142:SF0	TRNA PSEUDOURIDINE SYNTHASE-LIKE 1	coord: 49..298
IPR020103	Pseudouridine synthase, catalytic domain superfamily	SUPERFAMILY	55120	Pseudouridine synthase	coord: 49..289

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0031709.1	Lag0031709.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0008033	tRNA processing
biological_process	GO:0009451	RNA modification
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0106029	tRNA pseudouridine synthase activity
molecular_function	GO:0009982	pseudouridine synthase activity