Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAACTGATTAGGGATTTCTTTTGGGCTGGTGGGGATGTTAAAGCTAGTAGTCATCTTTTGAATTGGGATGTTCTTCCCCTTCCGCTTTGCCAAGGAGGTCTGAGGAATGGGGCCCTTAAGCGTATGAATATGGTTCTTCTTACTAAGTGGTGCTGGAGGTTTTCTATGGAACAAAACGCTTTATGGAGACAGGTGTGGCTAGCATTTATGGGGAGGAACCTGTTAGTGGTTGGTTTTTCATCCCACAGGAAGCTCCAAAAATAGACCCTGGTTTGACATTGCTAAGATGATGCCTGTATATGGAAAATTCATCAGATTTAATGTCGGTAATGGTACTCGAATTAGTTTCTGGAAGGATAAATGGCTGGGAGAGTCCTATTTTAAAGATGATTTTCTAGATATTTTCAATATTTCCTTGAAGCAAAATGCTAAGGTGGCGGACTGTTGGGATGAGGAGCAAATAACTTGGAAATTGGGTATTAGAAGAGGAGTATTTGATAGAGAATTACAAATGTGGATTTGGCTGACAAAGAAGCTGGAAGGTTTTCACCTGGAGTATGAGGATGATAAAATTACTTGGTCTTTGGAACCTACGAGAGCCTTTTCCACCAAATCCTTGTTCCTAAATTTGGCGATGTCGAGACCCTCTTTAAAATGCCCTCTGCCTAAAGCTAATCTGGGAGTTCGAAGTCCCTAA
mRNA sequence
ATGGAGAAACTGATTAGGGATTTCTTTTGGGCTGGTGGGGATGTTAAAGCTAGTAGTCATCTTTTGAATTGGGATGTTCTTCCCCTTCCGCTTTGCCAAGGAGGTCTGAGGAATGGGGCCCTTAAGCGTATGAATATGGTTCTTCTTACTAAGTGGTGCTGGAGGTTTTCTATGGAACAAAACGCTTTATGGAGACAGGTGTGGCTAGCATTTATGGGGAGGAACCTATTTAATGTCGGTAATGGTACTCGAATTAGTTTCTGGAAGGATAAATGGCTGGGAGAGTCCTATTTTAAAGATGATTTTCTAGATATTTTCAATATTTCCTTGAAGCAAAATGCTAAGGTGGCGGACTGTTGGGATGAGGAGCAAATAACTTGGAAATTGGGTATTAGAAGAGGAGTATTTGATAGAGAATTACAAATGTGGATTTGGCTGACAAAGAAGCTGGAAGGTTTTCACCTGGAGTATGAGGATGATAAAATTACTTGGTCTTTGGAACCTACGAGAGCCTTTTCCACCAAATCCTTGTTCCTAAATTTGGCGATGTCGAGACCCTCTTTAAAATGCCCTCTGCCTAAAGCTAATCTGGGAGTTCGAAGTCCCTAA
Coding sequence (CDS)
ATGGAGAAACTGATTAGGGATTTCTTTTGGGCTGGTGGGGATGTTAAAGCTAGTAGTCATCTTTTGAATTGGGATGTTCTTCCCCTTCCGCTTTGCCAAGGAGGTCTGAGGAATGGGGCCCTTAAGCGTATGAATATGGTTCTTCTTACTAAGTGGTGCTGGAGGTTTTCTATGGAACAAAACGCTTTATGGAGACAGGTGTGGCTAGCATTTATGGGGAGGAACCTATTTAATGTCGGTAATGGTACTCGAATTAGTTTCTGGAAGGATAAATGGCTGGGAGAGTCCTATTTTAAAGATGATTTTCTAGATATTTTCAATATTTCCTTGAAGCAAAATGCTAAGGTGGCGGACTGTTGGGATGAGGAGCAAATAACTTGGAAATTGGGTATTAGAAGAGGAGTATTTGATAGAGAATTACAAATGTGGATTTGGCTGACAAAGAAGCTGGAAGGTTTTCACCTGGAGTATGAGGATGATAAAATTACTTGGTCTTTGGAACCTACGAGAGCCTTTTCCACCAAATCCTTGTTCCTAAATTTGGCGATGTCGAGACCCTCTTTAAAATGCCCTCTGCCTAAAGCTAATCTGGGAGTTCGAAGTCCCTAA
Protein sequence
MEKLIRDFFWAGGDVKASSHLLNWDVLPLPLCQGGLRNGALKRMNMVLLTKWCWRFSMEQNALWRQVWLAFMGRNLFNVGNGTRISFWKDKWLGESYFKDDFLDIFNISLKQNAKVADCWDEEQITWKLGIRRGVFDRELQMWIWLTKKLEGFHLEYEDDKITWSLEPTRAFSTKSLFLNLAMSRPSLKCPLPKANLGVRSP
Homology
BLAST of Lag0031706 vs. NCBI nr
Match:
XP_022158566.1 (uncharacterized protein LOC111025019 [Momordica charantia])
HSP 1 Score: 140.2 bits (352), Expect = 2.0e-29
Identity = 69/169 (40.83%), Postives = 87/169 (51.48%), Query Frame = 0
Query: 1 MEKLIRDFFWAGGDVKASSHLLNWDVLPLPLCQGGLRNGALKRMNMVLLTKWCWRFSMEQ 60
M K++RD FW+G +L+ WD+ LP+ GGL GA N LL KW W F+ E+
Sbjct: 197 MNKIVRDLFWSGATSHGCKNLVKWDISSLPMKLGGLGIGAFPPKNNALLMKWLWHFTREE 256
Query: 61 NALWRQV-----------WL---------------------AFMGRNLFNVGNGTRISFW 120
NALWR+V WL AF +F G R+SFW
Sbjct: 257 NALWRRVIASIYGVDKYGWLTKAPKGKAKGRPWFDIAKNLSAFQEMVVFKANQGDRLSFW 316
Query: 121 KDKWLGESYFKDDFLDIFNISLKQNAKVADCWDEEQITWKLGIRRGVFD 138
DKW G D+F D+F +SLKQNA V DCW+EE TW L +RRG+FD
Sbjct: 317 MDKWAGNLPLLDEFPDMFALSLKQNAYVKDCWNEENQTWDLALRRGLFD 365
BLAST of Lag0031706 vs. NCBI nr
Match:
RVW53321.1 (putative ribonuclease H protein [Vitis vinifera])
HSP 1 Score: 133.7 bits (335), Expect = 1.8e-27
Identity = 70/213 (32.86%), Postives = 105/213 (49.30%), Query Frame = 0
Query: 1 MEKLIRDFFWAGGDVKASSHLLNWDVLPLPLCQGGLRNGALKRMNMVLLTKWCWRFSMEQ 60
+EK+ RDF W GG ++ HL+ W+++ L +GGL L MN LL KW WRF++E
Sbjct: 1101 LEKIQRDFLWGGGALEQRPHLVRWNLVCLERKKGGLGVRNLALMNKALLGKWNWRFAIES 1160
Query: 61 NALWRQV--------------------------------WLAFMGRNLFNVGNGTRISFW 120
ALW+Q WL + VGNG R+ FW
Sbjct: 1161 EALWKQAINHKYGVEEEGWCTRAVSGRHGVGLWKAIRKEWLGMYSNLAYRVGNGRRVRFW 1220
Query: 121 KDKWLGESYFKDDFLDIFNISLKQNAKVADCWDEEQI--TWKLGIRRGVFDRELQMWIWL 179
KDKW G+ + F +F ISL ++A V++ W+ + + W R + D E++M W
Sbjct: 1221 KDKWCGDEPLCESFPSLFAISLAKDAWVSEVWNPDGVGNGWTPLFSRALNDWEIEMVEWF 1280
BLAST of Lag0031706 vs. NCBI nr
Match:
RVX16265.1 (putative ribonuclease H protein [Vitis vinifera])
HSP 1 Score: 132.1 bits (331), Expect = 5.3e-27
Identity = 70/213 (32.86%), Postives = 108/213 (50.70%), Query Frame = 0
Query: 1 MEKLIRDFFWAGGDVKASSHLLNWDVLPLPLCQGGLRNGALKRMNMVLLTKWCWRFSMEQ 60
+EK+ RDF W GG + HL+ W+++ L +GGL L MN LL KW WRF+ E+
Sbjct: 366 LEKIQRDFLWGGGTLAHKPHLVRWNLVCLEKRKGGLGVRNLSLMNNALLCKWNWRFANER 425
Query: 61 NALWRQV--------------------------------WLAFMGRNLFNVGNGTRISFW 120
NALWR V W F G+ F++GNG R+ FW
Sbjct: 426 NALWRSVISLKYGVEERGWCTQDVMGRNEVGLWKAIRKKWGLFDGKVAFHLGNGQRVKFW 485
Query: 121 KDKWLGESYFKDDFLDIFNISLKQNAKVADCWD--EEQITWKLGIRRGVFDRELQMWIWL 179
KDKW G+ + F +F++S+ +NA V++ W+ + I W R D E+ + L
Sbjct: 486 KDKWCGDGPLCESFPSLFSMSMSKNAWVSEVWNPVSDGIGWTPLFARAFNDWEIDLVERL 545
BLAST of Lag0031706 vs. NCBI nr
Match:
RVW45168.1 (putative ribonuclease H protein [Vitis vinifera])
HSP 1 Score: 131.7 bits (330), Expect = 7.0e-27
Identity = 73/215 (33.95%), Postives = 108/215 (50.23%), Query Frame = 0
Query: 1 MEKLIRDFFWAGGDVKASSHLLNWDVLPLPLCQG--GLRNGALKRMNMVLLTKWCWRFSM 60
+EK+ RDF W GG ++ HL+ W+++ L +G G+RN AL MN LL KW WRF++
Sbjct: 158 LEKIQRDFLWGGGALEQRPHLVRWNLVCLERKKGDLGVRNLAL--MNKALLGKWNWRFAI 217
Query: 61 EQNALWRQV--------------------------------WLAFMGRNLFNVGNGTRIS 120
E ALW+Q WL + VGNG R+
Sbjct: 218 ENEALWKQAINHKYGVEEGGWCTWAVSGRHGVGLWKAIRKEWLGMNSSLAYRVGNGRRVR 277
Query: 121 FWKDKWLGESYFKDDFLDIFNISLKQNAKVADCWDEEQI--TWKLGIRRGVFDRELQMWI 179
FWKDKW G+ + F +F ISL ++A V+D W+ + + W R + D E++M
Sbjct: 278 FWKDKWCGDEPLCESFPSLFAISLAKDAWVSDVWNPDGVGDGWTPLFSRALNDWEIEMVE 337
BLAST of Lag0031706 vs. NCBI nr
Match:
RVW65502.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])
HSP 1 Score: 131.0 bits (328), Expect = 1.2e-26
Identity = 70/213 (32.86%), Postives = 107/213 (50.23%), Query Frame = 0
Query: 1 MEKLIRDFFWAGGDVKASSHLLNWDVLPLPLCQGGLRNGALKRMNMVLLTKWCWRFSMEQ 60
+EK+ RDF W GG + HL+ W+++ L +GGL L MN LL KW WRF+ E+
Sbjct: 932 LEKIQRDFLWGGGTLTHKPHLVRWNLICLEKRKGGLGVRNLSLMNNALLCKWNWRFANER 991
Query: 61 NALWRQV--------------------------------WLAFMGRNLFNVGNGTRISFW 120
+ALWR V W F GR F++GNG R+ FW
Sbjct: 992 DALWRSVISLKYDVEEGGWCTRDVLGRNGVGLWKAIRKKWGLFDGRVAFHLGNGQRVKFW 1051
Query: 121 KDKWLGESYFKDDFLDIFNISLKQNAKVADCWDE--EQITWKLGIRRGVFDRELQMWIWL 179
KDKW G+ + F +F+IS+ +NA V+D W+ + I W R D E+ + L
Sbjct: 1052 KDKWCGDGPLCESFPSLFSISMSKNAWVSDVWNPVGDGIGWTPLFARAFNDWEIILLERL 1111
BLAST of Lag0031706 vs. ExPASy TrEMBL
Match:
A0A6J1E196 (uncharacterized protein LOC111025019 OS=Momordica charantia OX=3673 GN=LOC111025019 PE=4 SV=1)
HSP 1 Score: 140.2 bits (352), Expect = 9.5e-30
Identity = 69/169 (40.83%), Postives = 87/169 (51.48%), Query Frame = 0
Query: 1 MEKLIRDFFWAGGDVKASSHLLNWDVLPLPLCQGGLRNGALKRMNMVLLTKWCWRFSMEQ 60
M K++RD FW+G +L+ WD+ LP+ GGL GA N LL KW W F+ E+
Sbjct: 197 MNKIVRDLFWSGATSHGCKNLVKWDISSLPMKLGGLGIGAFPPKNNALLMKWLWHFTREE 256
Query: 61 NALWRQV-----------WL---------------------AFMGRNLFNVGNGTRISFW 120
NALWR+V WL AF +F G R+SFW
Sbjct: 257 NALWRRVIASIYGVDKYGWLTKAPKGKAKGRPWFDIAKNLSAFQEMVVFKANQGDRLSFW 316
Query: 121 KDKWLGESYFKDDFLDIFNISLKQNAKVADCWDEEQITWKLGIRRGVFD 138
DKW G D+F D+F +SLKQNA V DCW+EE TW L +RRG+FD
Sbjct: 317 MDKWAGNLPLLDEFPDMFALSLKQNAYVKDCWNEENQTWDLALRRGLFD 365
BLAST of Lag0031706 vs. ExPASy TrEMBL
Match:
A0A438EZY9 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_1301 PE=4 SV=1)
HSP 1 Score: 133.7 bits (335), Expect = 8.9e-28
Identity = 70/213 (32.86%), Postives = 105/213 (49.30%), Query Frame = 0
Query: 1 MEKLIRDFFWAGGDVKASSHLLNWDVLPLPLCQGGLRNGALKRMNMVLLTKWCWRFSMEQ 60
+EK+ RDF W GG ++ HL+ W+++ L +GGL L MN LL KW WRF++E
Sbjct: 1101 LEKIQRDFLWGGGALEQRPHLVRWNLVCLERKKGGLGVRNLALMNKALLGKWNWRFAIES 1160
Query: 61 NALWRQV--------------------------------WLAFMGRNLFNVGNGTRISFW 120
ALW+Q WL + VGNG R+ FW
Sbjct: 1161 EALWKQAINHKYGVEEEGWCTRAVSGRHGVGLWKAIRKEWLGMYSNLAYRVGNGRRVRFW 1220
Query: 121 KDKWLGESYFKDDFLDIFNISLKQNAKVADCWDEEQI--TWKLGIRRGVFDRELQMWIWL 179
KDKW G+ + F +F ISL ++A V++ W+ + + W R + D E++M W
Sbjct: 1221 KDKWCGDEPLCESFPSLFAISLAKDAWVSEVWNPDGVGNGWTPLFSRALNDWEIEMVEWF 1280
BLAST of Lag0031706 vs. ExPASy TrEMBL
Match:
A0A803QQM3 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 132.5 bits (332), Expect = 2.0e-27
Identity = 76/217 (35.02%), Postives = 105/217 (48.39%), Query Frame = 0
Query: 1 MEKLIRDFFWAGGDVKASSHLLNWDVLPLPLCQGGLRNGALKRMNMVLLTKWCWRFSMEQ 60
+EK++RDFFW GGD+ HL+ WD + P +GGL G L+ N LL KW WRF +E
Sbjct: 1744 LEKMMRDFFWEGGDLAGGDHLVAWDEVCKPRAEGGLAIGRLEMRNKGLLMKWLWRFPLES 1803
Query: 61 NALWRQVWLAFMGRN--------------------------------LFNVGNGTRISFW 120
N+LW +V + GR F VGNG I FW
Sbjct: 1804 NSLWHKVIKSRYGRADNFWDTKHGVRLSPRGPWKDISDLYDEYGKLVKFKVGNGACIRFW 1863
Query: 121 KDKWLGESYFKDDFLDIFNISLKQNAKVAD-CWDEEQI-----TWKLGIRRGVFDRELQM 179
+D+W+G S +D FL++ IS +NA + + DE ++ +W L RR + DRE+
Sbjct: 1864 EDEWIGGSSLRDQFLNLAVISRAKNASIQEMIGDEGEVGDCVASWDLNFRRNIMDREIPS 1923
BLAST of Lag0031706 vs. ExPASy TrEMBL
Match:
A0A438K4Y4 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_474 PE=4 SV=1)
HSP 1 Score: 132.1 bits (331), Expect = 2.6e-27
Identity = 70/213 (32.86%), Postives = 108/213 (50.70%), Query Frame = 0
Query: 1 MEKLIRDFFWAGGDVKASSHLLNWDVLPLPLCQGGLRNGALKRMNMVLLTKWCWRFSMEQ 60
+EK+ RDF W GG + HL+ W+++ L +GGL L MN LL KW WRF+ E+
Sbjct: 366 LEKIQRDFLWGGGTLAHKPHLVRWNLVCLEKRKGGLGVRNLSLMNNALLCKWNWRFANER 425
Query: 61 NALWRQV--------------------------------WLAFMGRNLFNVGNGTRISFW 120
NALWR V W F G+ F++GNG R+ FW
Sbjct: 426 NALWRSVISLKYGVEERGWCTQDVMGRNEVGLWKAIRKKWGLFDGKVAFHLGNGQRVKFW 485
Query: 121 KDKWLGESYFKDDFLDIFNISLKQNAKVADCWD--EEQITWKLGIRRGVFDRELQMWIWL 179
KDKW G+ + F +F++S+ +NA V++ W+ + I W R D E+ + L
Sbjct: 486 KDKWCGDGPLCESFPSLFSMSMSKNAWVSEVWNPVSDGIGWTPLFARAFNDWEIDLVERL 545
BLAST of Lag0031706 vs. ExPASy TrEMBL
Match:
A0A438EBY2 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_893 PE=4 SV=1)
HSP 1 Score: 131.7 bits (330), Expect = 3.4e-27
Identity = 73/215 (33.95%), Postives = 108/215 (50.23%), Query Frame = 0
Query: 1 MEKLIRDFFWAGGDVKASSHLLNWDVLPLPLCQG--GLRNGALKRMNMVLLTKWCWRFSM 60
+EK+ RDF W GG ++ HL+ W+++ L +G G+RN AL MN LL KW WRF++
Sbjct: 158 LEKIQRDFLWGGGALEQRPHLVRWNLVCLERKKGDLGVRNLAL--MNKALLGKWNWRFAI 217
Query: 61 EQNALWRQV--------------------------------WLAFMGRNLFNVGNGTRIS 120
E ALW+Q WL + VGNG R+
Sbjct: 218 ENEALWKQAINHKYGVEEGGWCTWAVSGRHGVGLWKAIRKEWLGMNSSLAYRVGNGRRVR 277
Query: 121 FWKDKWLGESYFKDDFLDIFNISLKQNAKVADCWDEEQI--TWKLGIRRGVFDRELQMWI 179
FWKDKW G+ + F +F ISL ++A V+D W+ + + W R + D E++M
Sbjct: 278 FWKDKWCGDEPLCESFPSLFAISLAKDAWVSDVWNPDGVGDGWTPLFSRALNDWEIEMVE 337
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022158566.1 | 2.0e-29 | 40.83 | uncharacterized protein LOC111025019 [Momordica charantia] | [more] |
RVW53321.1 | 1.8e-27 | 32.86 | putative ribonuclease H protein [Vitis vinifera] | [more] |
RVX16265.1 | 5.3e-27 | 32.86 | putative ribonuclease H protein [Vitis vinifera] | [more] |
RVW45168.1 | 7.0e-27 | 33.95 | putative ribonuclease H protein [Vitis vinifera] | [more] |
RVW65502.1 | 1.2e-26 | 32.86 | Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1E196 | 9.5e-30 | 40.83 | uncharacterized protein LOC111025019 OS=Momordica charantia OX=3673 GN=LOC111025... | [more] |
A0A438EZY9 | 8.9e-28 | 32.86 | Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_1301 ... | [more] |
A0A803QQM3 | 2.0e-27 | 35.02 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A438K4Y4 | 2.6e-27 | 32.86 | Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_474 P... | [more] |
A0A438EBY2 | 3.4e-27 | 33.95 | Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_893 P... | [more] |
Match Name | E-value | Identity | Description | |