Lag0031706 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0031706
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionTransposon TX1 uncharacterized 149 kDa protein
Locationchr11: 12415979 .. 12416681 (-)
RNA-Seq ExpressionLag0031706
SyntenyLag0031706
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAACTGATTAGGGATTTCTTTTGGGCTGGTGGGGATGTTAAAGCTAGTAGTCATCTTTTGAATTGGGATGTTCTTCCCCTTCCGCTTTGCCAAGGAGGTCTGAGGAATGGGGCCCTTAAGCGTATGAATATGGTTCTTCTTACTAAGTGGTGCTGGAGGTTTTCTATGGAACAAAACGCTTTATGGAGACAGGTGTGGCTAGCATTTATGGGGAGGAACCTGTTAGTGGTTGGTTTTTCATCCCACAGGAAGCTCCAAAAATAGACCCTGGTTTGACATTGCTAAGATGATGCCTGTATATGGAAAATTCATCAGATTTAATGTCGGTAATGGTACTCGAATTAGTTTCTGGAAGGATAAATGGCTGGGAGAGTCCTATTTTAAAGATGATTTTCTAGATATTTTCAATATTTCCTTGAAGCAAAATGCTAAGGTGGCGGACTGTTGGGATGAGGAGCAAATAACTTGGAAATTGGGTATTAGAAGAGGAGTATTTGATAGAGAATTACAAATGTGGATTTGGCTGACAAAGAAGCTGGAAGGTTTTCACCTGGAGTATGAGGATGATAAAATTACTTGGTCTTTGGAACCTACGAGAGCCTTTTCCACCAAATCCTTGTTCCTAAATTTGGCGATGTCGAGACCCTCTTTAAAATGCCCTCTGCCTAAAGCTAATCTGGGAGTTCGAAGTCCCTAA

mRNA sequence

ATGGAGAAACTGATTAGGGATTTCTTTTGGGCTGGTGGGGATGTTAAAGCTAGTAGTCATCTTTTGAATTGGGATGTTCTTCCCCTTCCGCTTTGCCAAGGAGGTCTGAGGAATGGGGCCCTTAAGCGTATGAATATGGTTCTTCTTACTAAGTGGTGCTGGAGGTTTTCTATGGAACAAAACGCTTTATGGAGACAGGTGTGGCTAGCATTTATGGGGAGGAACCTATTTAATGTCGGTAATGGTACTCGAATTAGTTTCTGGAAGGATAAATGGCTGGGAGAGTCCTATTTTAAAGATGATTTTCTAGATATTTTCAATATTTCCTTGAAGCAAAATGCTAAGGTGGCGGACTGTTGGGATGAGGAGCAAATAACTTGGAAATTGGGTATTAGAAGAGGAGTATTTGATAGAGAATTACAAATGTGGATTTGGCTGACAAAGAAGCTGGAAGGTTTTCACCTGGAGTATGAGGATGATAAAATTACTTGGTCTTTGGAACCTACGAGAGCCTTTTCCACCAAATCCTTGTTCCTAAATTTGGCGATGTCGAGACCCTCTTTAAAATGCCCTCTGCCTAAAGCTAATCTGGGAGTTCGAAGTCCCTAA

Coding sequence (CDS)

ATGGAGAAACTGATTAGGGATTTCTTTTGGGCTGGTGGGGATGTTAAAGCTAGTAGTCATCTTTTGAATTGGGATGTTCTTCCCCTTCCGCTTTGCCAAGGAGGTCTGAGGAATGGGGCCCTTAAGCGTATGAATATGGTTCTTCTTACTAAGTGGTGCTGGAGGTTTTCTATGGAACAAAACGCTTTATGGAGACAGGTGTGGCTAGCATTTATGGGGAGGAACCTATTTAATGTCGGTAATGGTACTCGAATTAGTTTCTGGAAGGATAAATGGCTGGGAGAGTCCTATTTTAAAGATGATTTTCTAGATATTTTCAATATTTCCTTGAAGCAAAATGCTAAGGTGGCGGACTGTTGGGATGAGGAGCAAATAACTTGGAAATTGGGTATTAGAAGAGGAGTATTTGATAGAGAATTACAAATGTGGATTTGGCTGACAAAGAAGCTGGAAGGTTTTCACCTGGAGTATGAGGATGATAAAATTACTTGGTCTTTGGAACCTACGAGAGCCTTTTCCACCAAATCCTTGTTCCTAAATTTGGCGATGTCGAGACCCTCTTTAAAATGCCCTCTGCCTAAAGCTAATCTGGGAGTTCGAAGTCCCTAA

Protein sequence

MEKLIRDFFWAGGDVKASSHLLNWDVLPLPLCQGGLRNGALKRMNMVLLTKWCWRFSMEQNALWRQVWLAFMGRNLFNVGNGTRISFWKDKWLGESYFKDDFLDIFNISLKQNAKVADCWDEEQITWKLGIRRGVFDRELQMWIWLTKKLEGFHLEYEDDKITWSLEPTRAFSTKSLFLNLAMSRPSLKCPLPKANLGVRSP
Homology
BLAST of Lag0031706 vs. NCBI nr
Match: XP_022158566.1 (uncharacterized protein LOC111025019 [Momordica charantia])

HSP 1 Score: 140.2 bits (352), Expect = 2.0e-29
Identity = 69/169 (40.83%), Postives = 87/169 (51.48%), Query Frame = 0

Query: 1   MEKLIRDFFWAGGDVKASSHLLNWDVLPLPLCQGGLRNGALKRMNMVLLTKWCWRFSMEQ 60
           M K++RD FW+G       +L+ WD+  LP+  GGL  GA    N  LL KW W F+ E+
Sbjct: 197 MNKIVRDLFWSGATSHGCKNLVKWDISSLPMKLGGLGIGAFPPKNNALLMKWLWHFTREE 256

Query: 61  NALWRQV-----------WL---------------------AFMGRNLFNVGNGTRISFW 120
           NALWR+V           WL                     AF    +F    G R+SFW
Sbjct: 257 NALWRRVIASIYGVDKYGWLTKAPKGKAKGRPWFDIAKNLSAFQEMVVFKANQGDRLSFW 316

Query: 121 KDKWLGESYFKDDFLDIFNISLKQNAKVADCWDEEQITWKLGIRRGVFD 138
            DKW G     D+F D+F +SLKQNA V DCW+EE  TW L +RRG+FD
Sbjct: 317 MDKWAGNLPLLDEFPDMFALSLKQNAYVKDCWNEENQTWDLALRRGLFD 365

BLAST of Lag0031706 vs. NCBI nr
Match: RVW53321.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 133.7 bits (335), Expect = 1.8e-27
Identity = 70/213 (32.86%), Postives = 105/213 (49.30%), Query Frame = 0

Query: 1    MEKLIRDFFWAGGDVKASSHLLNWDVLPLPLCQGGLRNGALKRMNMVLLTKWCWRFSMEQ 60
            +EK+ RDF W GG ++   HL+ W+++ L   +GGL    L  MN  LL KW WRF++E 
Sbjct: 1101 LEKIQRDFLWGGGALEQRPHLVRWNLVCLERKKGGLGVRNLALMNKALLGKWNWRFAIES 1160

Query: 61   NALWRQV--------------------------------WLAFMGRNLFNVGNGTRISFW 120
             ALW+Q                                 WL       + VGNG R+ FW
Sbjct: 1161 EALWKQAINHKYGVEEEGWCTRAVSGRHGVGLWKAIRKEWLGMYSNLAYRVGNGRRVRFW 1220

Query: 121  KDKWLGESYFKDDFLDIFNISLKQNAKVADCWDEEQI--TWKLGIRRGVFDRELQMWIWL 179
            KDKW G+    + F  +F ISL ++A V++ W+ + +   W     R + D E++M  W 
Sbjct: 1221 KDKWCGDEPLCESFPSLFAISLAKDAWVSEVWNPDGVGNGWTPLFSRALNDWEIEMVEWF 1280

BLAST of Lag0031706 vs. NCBI nr
Match: RVX16265.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 132.1 bits (331), Expect = 5.3e-27
Identity = 70/213 (32.86%), Postives = 108/213 (50.70%), Query Frame = 0

Query: 1   MEKLIRDFFWAGGDVKASSHLLNWDVLPLPLCQGGLRNGALKRMNMVLLTKWCWRFSMEQ 60
           +EK+ RDF W GG +    HL+ W+++ L   +GGL    L  MN  LL KW WRF+ E+
Sbjct: 366 LEKIQRDFLWGGGTLAHKPHLVRWNLVCLEKRKGGLGVRNLSLMNNALLCKWNWRFANER 425

Query: 61  NALWRQV--------------------------------WLAFMGRNLFNVGNGTRISFW 120
           NALWR V                                W  F G+  F++GNG R+ FW
Sbjct: 426 NALWRSVISLKYGVEERGWCTQDVMGRNEVGLWKAIRKKWGLFDGKVAFHLGNGQRVKFW 485

Query: 121 KDKWLGESYFKDDFLDIFNISLKQNAKVADCWD--EEQITWKLGIRRGVFDRELQMWIWL 179
           KDKW G+    + F  +F++S+ +NA V++ W+   + I W     R   D E+ +   L
Sbjct: 486 KDKWCGDGPLCESFPSLFSMSMSKNAWVSEVWNPVSDGIGWTPLFARAFNDWEIDLVERL 545

BLAST of Lag0031706 vs. NCBI nr
Match: RVW45168.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 131.7 bits (330), Expect = 7.0e-27
Identity = 73/215 (33.95%), Postives = 108/215 (50.23%), Query Frame = 0

Query: 1   MEKLIRDFFWAGGDVKASSHLLNWDVLPLPLCQG--GLRNGALKRMNMVLLTKWCWRFSM 60
           +EK+ RDF W GG ++   HL+ W+++ L   +G  G+RN AL  MN  LL KW WRF++
Sbjct: 158 LEKIQRDFLWGGGALEQRPHLVRWNLVCLERKKGDLGVRNLAL--MNKALLGKWNWRFAI 217

Query: 61  EQNALWRQV--------------------------------WLAFMGRNLFNVGNGTRIS 120
           E  ALW+Q                                 WL       + VGNG R+ 
Sbjct: 218 ENEALWKQAINHKYGVEEGGWCTWAVSGRHGVGLWKAIRKEWLGMNSSLAYRVGNGRRVR 277

Query: 121 FWKDKWLGESYFKDDFLDIFNISLKQNAKVADCWDEEQI--TWKLGIRRGVFDRELQMWI 179
           FWKDKW G+    + F  +F ISL ++A V+D W+ + +   W     R + D E++M  
Sbjct: 278 FWKDKWCGDEPLCESFPSLFAISLAKDAWVSDVWNPDGVGDGWTPLFSRALNDWEIEMVE 337

BLAST of Lag0031706 vs. NCBI nr
Match: RVW65502.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 131.0 bits (328), Expect = 1.2e-26
Identity = 70/213 (32.86%), Postives = 107/213 (50.23%), Query Frame = 0

Query: 1    MEKLIRDFFWAGGDVKASSHLLNWDVLPLPLCQGGLRNGALKRMNMVLLTKWCWRFSMEQ 60
            +EK+ RDF W GG +    HL+ W+++ L   +GGL    L  MN  LL KW WRF+ E+
Sbjct: 932  LEKIQRDFLWGGGTLTHKPHLVRWNLICLEKRKGGLGVRNLSLMNNALLCKWNWRFANER 991

Query: 61   NALWRQV--------------------------------WLAFMGRNLFNVGNGTRISFW 120
            +ALWR V                                W  F GR  F++GNG R+ FW
Sbjct: 992  DALWRSVISLKYDVEEGGWCTRDVLGRNGVGLWKAIRKKWGLFDGRVAFHLGNGQRVKFW 1051

Query: 121  KDKWLGESYFKDDFLDIFNISLKQNAKVADCWDE--EQITWKLGIRRGVFDRELQMWIWL 179
            KDKW G+    + F  +F+IS+ +NA V+D W+   + I W     R   D E+ +   L
Sbjct: 1052 KDKWCGDGPLCESFPSLFSISMSKNAWVSDVWNPVGDGIGWTPLFARAFNDWEIILLERL 1111

BLAST of Lag0031706 vs. ExPASy TrEMBL
Match: A0A6J1E196 (uncharacterized protein LOC111025019 OS=Momordica charantia OX=3673 GN=LOC111025019 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 9.5e-30
Identity = 69/169 (40.83%), Postives = 87/169 (51.48%), Query Frame = 0

Query: 1   MEKLIRDFFWAGGDVKASSHLLNWDVLPLPLCQGGLRNGALKRMNMVLLTKWCWRFSMEQ 60
           M K++RD FW+G       +L+ WD+  LP+  GGL  GA    N  LL KW W F+ E+
Sbjct: 197 MNKIVRDLFWSGATSHGCKNLVKWDISSLPMKLGGLGIGAFPPKNNALLMKWLWHFTREE 256

Query: 61  NALWRQV-----------WL---------------------AFMGRNLFNVGNGTRISFW 120
           NALWR+V           WL                     AF    +F    G R+SFW
Sbjct: 257 NALWRRVIASIYGVDKYGWLTKAPKGKAKGRPWFDIAKNLSAFQEMVVFKANQGDRLSFW 316

Query: 121 KDKWLGESYFKDDFLDIFNISLKQNAKVADCWDEEQITWKLGIRRGVFD 138
            DKW G     D+F D+F +SLKQNA V DCW+EE  TW L +RRG+FD
Sbjct: 317 MDKWAGNLPLLDEFPDMFALSLKQNAYVKDCWNEENQTWDLALRRGLFD 365

BLAST of Lag0031706 vs. ExPASy TrEMBL
Match: A0A438EZY9 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_1301 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 8.9e-28
Identity = 70/213 (32.86%), Postives = 105/213 (49.30%), Query Frame = 0

Query: 1    MEKLIRDFFWAGGDVKASSHLLNWDVLPLPLCQGGLRNGALKRMNMVLLTKWCWRFSMEQ 60
            +EK+ RDF W GG ++   HL+ W+++ L   +GGL    L  MN  LL KW WRF++E 
Sbjct: 1101 LEKIQRDFLWGGGALEQRPHLVRWNLVCLERKKGGLGVRNLALMNKALLGKWNWRFAIES 1160

Query: 61   NALWRQV--------------------------------WLAFMGRNLFNVGNGTRISFW 120
             ALW+Q                                 WL       + VGNG R+ FW
Sbjct: 1161 EALWKQAINHKYGVEEEGWCTRAVSGRHGVGLWKAIRKEWLGMYSNLAYRVGNGRRVRFW 1220

Query: 121  KDKWLGESYFKDDFLDIFNISLKQNAKVADCWDEEQI--TWKLGIRRGVFDRELQMWIWL 179
            KDKW G+    + F  +F ISL ++A V++ W+ + +   W     R + D E++M  W 
Sbjct: 1221 KDKWCGDEPLCESFPSLFAISLAKDAWVSEVWNPDGVGNGWTPLFSRALNDWEIEMVEWF 1280

BLAST of Lag0031706 vs. ExPASy TrEMBL
Match: A0A803QQM3 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.0e-27
Identity = 76/217 (35.02%), Postives = 105/217 (48.39%), Query Frame = 0

Query: 1    MEKLIRDFFWAGGDVKASSHLLNWDVLPLPLCQGGLRNGALKRMNMVLLTKWCWRFSMEQ 60
            +EK++RDFFW GGD+    HL+ WD +  P  +GGL  G L+  N  LL KW WRF +E 
Sbjct: 1744 LEKMMRDFFWEGGDLAGGDHLVAWDEVCKPRAEGGLAIGRLEMRNKGLLMKWLWRFPLES 1803

Query: 61   NALWRQVWLAFMGRN--------------------------------LFNVGNGTRISFW 120
            N+LW +V  +  GR                                  F VGNG  I FW
Sbjct: 1804 NSLWHKVIKSRYGRADNFWDTKHGVRLSPRGPWKDISDLYDEYGKLVKFKVGNGACIRFW 1863

Query: 121  KDKWLGESYFKDDFLDIFNISLKQNAKVAD-CWDEEQI-----TWKLGIRRGVFDRELQM 179
            +D+W+G S  +D FL++  IS  +NA + +   DE ++     +W L  RR + DRE+  
Sbjct: 1864 EDEWIGGSSLRDQFLNLAVISRAKNASIQEMIGDEGEVGDCVASWDLNFRRNIMDREIPS 1923

BLAST of Lag0031706 vs. ExPASy TrEMBL
Match: A0A438K4Y4 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_474 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 2.6e-27
Identity = 70/213 (32.86%), Postives = 108/213 (50.70%), Query Frame = 0

Query: 1   MEKLIRDFFWAGGDVKASSHLLNWDVLPLPLCQGGLRNGALKRMNMVLLTKWCWRFSMEQ 60
           +EK+ RDF W GG +    HL+ W+++ L   +GGL    L  MN  LL KW WRF+ E+
Sbjct: 366 LEKIQRDFLWGGGTLAHKPHLVRWNLVCLEKRKGGLGVRNLSLMNNALLCKWNWRFANER 425

Query: 61  NALWRQV--------------------------------WLAFMGRNLFNVGNGTRISFW 120
           NALWR V                                W  F G+  F++GNG R+ FW
Sbjct: 426 NALWRSVISLKYGVEERGWCTQDVMGRNEVGLWKAIRKKWGLFDGKVAFHLGNGQRVKFW 485

Query: 121 KDKWLGESYFKDDFLDIFNISLKQNAKVADCWD--EEQITWKLGIRRGVFDRELQMWIWL 179
           KDKW G+    + F  +F++S+ +NA V++ W+   + I W     R   D E+ +   L
Sbjct: 486 KDKWCGDGPLCESFPSLFSMSMSKNAWVSEVWNPVSDGIGWTPLFARAFNDWEIDLVERL 545

BLAST of Lag0031706 vs. ExPASy TrEMBL
Match: A0A438EBY2 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_893 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 3.4e-27
Identity = 73/215 (33.95%), Postives = 108/215 (50.23%), Query Frame = 0

Query: 1   MEKLIRDFFWAGGDVKASSHLLNWDVLPLPLCQG--GLRNGALKRMNMVLLTKWCWRFSM 60
           +EK+ RDF W GG ++   HL+ W+++ L   +G  G+RN AL  MN  LL KW WRF++
Sbjct: 158 LEKIQRDFLWGGGALEQRPHLVRWNLVCLERKKGDLGVRNLAL--MNKALLGKWNWRFAI 217

Query: 61  EQNALWRQV--------------------------------WLAFMGRNLFNVGNGTRIS 120
           E  ALW+Q                                 WL       + VGNG R+ 
Sbjct: 218 ENEALWKQAINHKYGVEEGGWCTWAVSGRHGVGLWKAIRKEWLGMNSSLAYRVGNGRRVR 277

Query: 121 FWKDKWLGESYFKDDFLDIFNISLKQNAKVADCWDEEQI--TWKLGIRRGVFDRELQMWI 179
           FWKDKW G+    + F  +F ISL ++A V+D W+ + +   W     R + D E++M  
Sbjct: 278 FWKDKWCGDEPLCESFPSLFAISLAKDAWVSDVWNPDGVGDGWTPLFSRALNDWEIEMVE 337

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022158566.12.0e-2940.83uncharacterized protein LOC111025019 [Momordica charantia][more]
RVW53321.11.8e-2732.86putative ribonuclease H protein [Vitis vinifera][more]
RVX16265.15.3e-2732.86putative ribonuclease H protein [Vitis vinifera][more]
RVW45168.17.0e-2733.95putative ribonuclease H protein [Vitis vinifera][more]
RVW65502.11.2e-2632.86Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1E1969.5e-3040.83uncharacterized protein LOC111025019 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A438EZY98.9e-2832.86Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_1301 ... [more]
A0A803QQM32.0e-2735.02Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A438K4Y42.6e-2732.86Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_474 P... [more]
A0A438EBY23.4e-2733.95Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_893 P... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36617:SF4SUBFAMILY NOT NAMEDcoord: 46..182
NoneNo IPR availablePANTHERPTHR36617PROTEIN, PUTATIVE-RELATEDcoord: 46..182

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0031706.1Lag0031706.1mRNA