Lag0031247 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0031247
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Transmembrane protein
Location	chr11: 6237005 .. 6237352 (-)
RNA-Seq Expression	Lag0031247
Synteny	Lag0031247

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCGACGAGGAGGATCCATGGTTAGCTCCGGACAAGCTCTACCACTTTCTTCTCTGTTTCACTCTCACTATCTTCTTCGCTGGATTGGCCATTCACACGCGCTATCCATTCATCCGCCGCCACTCCATTCTCATCGGATCCGTCCTTTCTCTTTTCGCCGGAGCCGCCAAAGAGGTCGCCGACGAGCTCGGCTTCTTCAAGTCCGCCGGCGCCTCTGCCAGGGACGCCGTCGCCGATCTGATCGGCGTCTTGATCGCTTCTTTCCTTCTTCACGCCCTCAGATTCTCGATCCGTAGCGGCGGCGACAAAGAAGCTAGCCCTAATCGGGACATTTCAATGGTCTGA

mRNA sequence

ATGGGCGACGAGGAGGATCCATGGTTAGCTCCGGACAAGCTCTACCACTTTCTTCTCTGTTTCACTCTCACTATCTTCTTCGCTGGATTGGCCATTCACACGCGCTATCCATTCATCCGCCGCCACTCCATTCTCATCGGATCCGTCCTTTCTCTTTTCGCCGGAGCCGCCAAAGAGGTCGCCGACGAGCTCGGCTTCTTCAAGTCCGCCGGCGCCTCTGCCAGGGACGCCGTCGCCGATCTGATCGGCGTCTTGATCGCTTCTTTCCTTCTTCACGCCCTCAGATTCTCGATCCGTAGCGGCGGCGACAAAGAAGCTAGCCCTAATCGGGACATTTCAATGGTCTGA

Coding sequence (CDS)

ATGGGCGACGAGGAGGATCCATGGTTAGCTCCGGACAAGCTCTACCACTTTCTTCTCTGTTTCACTCTCACTATCTTCTTCGCTGGATTGGCCATTCACACGCGCTATCCATTCATCCGCCGCCACTCCATTCTCATCGGATCCGTCCTTTCTCTTTTCGCCGGAGCCGCCAAAGAGGTCGCCGACGAGCTCGGCTTCTTCAAGTCCGCCGGCGCCTCTGCCAGGGACGCCGTCGCCGATCTGATCGGCGTCTTGATCGCTTCTTTCCTTCTTCACGCCCTCAGATTCTCGATCCGTAGCGGCGGCGACAAAGAAGCTAGCCCTAATCGGGACATTTCAATGGTCTGA

Protein sequence

MGDEEDPWLAPDKLYHFLLCFTLTIFFAGLAIHTRYPFIRRHSILIGSVLSLFAGAAKEVADELGFFKSAGASARDAVADLIGVLIASFLLHALRFSIRSGGDKEASPNRDISMV

Homology

[Close]

BLAST of Lag0031247 vs. NCBI nr
Match: XP_038890690.1 (uncharacterized protein LOC120080188 [Benincasa hispida])

HSP 1 Score: 207.2 bits (526), Expect = 7.4e-50
Identity = 102/115 (88.70%), Postives = 108/115 (93.91%), Query Frame = 0


Query: 1   MGDEEDPWLAPDKLYHFLLCFTLTIFFAGLAIHTRYPFIRRHSILIGSVLSLFAGAAKEV 60
           M D++DPWLAPDKLYHFLLCFTLTI FA LA+HTRYPFIRRHSILIGSV+SLFAGAAKEV
Sbjct: 33  MEDDDDPWLAPDKLYHFLLCFTLTILFASLALHTRYPFIRRHSILIGSVVSLFAGAAKEV 92

Query: 61  ADELGFFKSAGASARDAVADLIGVLIASFLLHALRFSIRSGGDKEASPNRDISMV 116
           ADELGFFKSAGAS RDA+ADLIGVLIASFLLH LRFSIRS GDKEASP+RDI MV
Sbjct: 93  ADELGFFKSAGASTRDAIADLIGVLIASFLLHTLRFSIRSSGDKEASPDRDILMV 147

[Close]

BLAST of Lag0031247 vs. NCBI nr
Match: XP_022948457.1 (uncharacterized protein LOC111452136 [Cucurbita moschata] >XP_022948458.1 uncharacterized protein LOC111452136 [Cucurbita moschata] >XP_023524714.1 uncharacterized protein LOC111788574 [Cucurbita pepo subsp. pepo] >XP_023524715.1 uncharacterized protein LOC111788574 [Cucurbita pepo subsp. pepo] >XP_023524717.1 uncharacterized protein LOC111788574 [Cucurbita pepo subsp. pepo] >XP_023524718.1 uncharacterized protein LOC111788574 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 203.8 bits (517), Expect = 8.2e-49
Identity = 101/115 (87.83%), Postives = 105/115 (91.30%), Query Frame = 0


Query: 1   MGDEEDPWLAPDKLYHFLLCFTLTIFFAGLAIHTRYPFIRRHSILIGSVLSLFAGAAKEV 60
           M D+EDPW APDKLYHFLLCFTLT+FFA LA  TRYPFIRRHSI+IGSVLSLFAGAAKEV
Sbjct: 1   MDDDEDPWFAPDKLYHFLLCFTLTVFFAALATLTRYPFIRRHSIMIGSVLSLFAGAAKEV 60

Query: 61  ADELGFFKSAGASARDAVADLIGVLIASFLLHALRFSIRSGGDKEASPNRDISMV 116
           ADELGFFKSAGAS RDAVADL+GVLIASF LHALRFSIR GG KEASPNRDI MV
Sbjct: 61  ADELGFFKSAGASTRDAVADLVGVLIASFFLHALRFSIRRGGGKEASPNRDILMV 115

[Close]

BLAST of Lag0031247 vs. NCBI nr
Match: KAG7036537.1 (hypothetical protein SDJN02_00156, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 203.8 bits (517), Expect = 8.2e-49
Identity = 101/115 (87.83%), Postives = 105/115 (91.30%), Query Frame = 0


Query: 1   MGDEEDPWLAPDKLYHFLLCFTLTIFFAGLAIHTRYPFIRRHSILIGSVLSLFAGAAKEV 60
           M D+EDPW APDKLYHFLLCFTLT+FFA LA  TRYPFIRRHSI+IGSVLSLFAGAAKEV
Sbjct: 1   MDDDEDPWFAPDKLYHFLLCFTLTVFFAALATLTRYPFIRRHSIMIGSVLSLFAGAAKEV 60

Query: 61  ADELGFFKSAGASARDAVADLIGVLIASFLLHALRFSIRSGGDKEASPNRDISMV 116
           ADELGFFKSAGAS RDAVADL+GVLIASF LHALRFSIR GG KEASPNRDI MV
Sbjct: 61  ADELGFFKSAGASTRDAVADLVGVLIASFFLHALRFSIRRGGGKEASPNRDILMV 115

[Close]

BLAST of Lag0031247 vs. NCBI nr
Match: KAG6606831.1 (hypothetical protein SDJN03_00173, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 201.8 bits (512), Expect = 3.1e-48
Identity = 100/114 (87.72%), Postives = 104/114 (91.23%), Query Frame = 0


Query: 1   MGDEEDPWLAPDKLYHFLLCFTLTIFFAGLAIHTRYPFIRRHSILIGSVLSLFAGAAKEV 60
           M D+EDPW APDKLYHFLLCFTLT+FFA LA  TRYPFIRRHSI+IGSVLSLFAGAAKEV
Sbjct: 1   MDDDEDPWFAPDKLYHFLLCFTLTVFFAALATLTRYPFIRRHSIMIGSVLSLFAGAAKEV 60

Query: 61  ADELGFFKSAGASARDAVADLIGVLIASFLLHALRFSIRSGGDKEASPNRDISM 115
           ADELGFFKSAGAS RDAVADL+GVLIASF LHALRFSIR GG KEASPNRDI M
Sbjct: 61  ADELGFFKSAGASTRDAVADLVGVLIASFFLHALRFSIRRGGGKEASPNRDILM 114

[Close]

BLAST of Lag0031247 vs. NCBI nr
Match: XP_022997696.1 (uncharacterized protein LOC111492582 [Cucurbita maxima] >XP_022997697.1 uncharacterized protein LOC111492582 [Cucurbita maxima])

HSP 1 Score: 199.9 bits (507), Expect = 1.2e-47
Identity = 100/115 (86.96%), Postives = 104/115 (90.43%), Query Frame = 0


Query: 1   MGDEEDPWLAPDKLYHFLLCFTLTIFFAGLAIHTRYPFIRRHSILIGSVLSLFAGAAKEV 60
           M D+EDPW APDKLYHFLLCFTLT+FFA LA  TR+PFIRRHSI+IGSVLSLFAGAAKEV
Sbjct: 1   MDDDEDPWFAPDKLYHFLLCFTLTVFFAALATLTRHPFIRRHSIMIGSVLSLFAGAAKEV 60

Query: 61  ADELGFFKSAGASARDAVADLIGVLIASFLLHALRFSIRSGGDKEASPNRDISMV 116
           ADELGFFKSAGAS RDAVADLIGVLIASF LHALRF IR GG KEASPNRDI MV
Sbjct: 61  ADELGFFKSAGASTRDAVADLIGVLIASFFLHALRFLIRRGGGKEASPNRDILMV 115

The following BLAST results are available for this feature:

BLAST of Lag0031247 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890690.1	7.4e-50	88.70	uncharacterized protein LOC120080188 [Benincasa hispida]	[more]
XP_022948457.1	8.2e-49	87.83	uncharacterized protein LOC111452136 [Cucurbita moschata] >XP_022948458.1 unchar...	[more]
KAG7036537.1	8.2e-49	87.83	hypothetical protein SDJN02_00156, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6606831.1	3.1e-48	87.72	hypothetical protein SDJN03_00173, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022997696.1	1.2e-47	86.96	uncharacterized protein LOC111492582 [Cucurbita maxima] >XP_022997697.1 uncharac...	[more]

BLAST of Lag0031247 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35462	FAMILY NOT NAMED	coord: 3..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0031247.1	Lag0031247.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane