Lag0031123 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0031123
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionGlutamate receptor
Locationchr11: 5036517 .. 5038182 (-)
RNA-Seq ExpressionLag0031123
SyntenyLag0031123
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGATGAAAATGTGTCTTCTTCCTCTGCTGCAACTATTTCTACTCCAAGTTCGTCAGCTGCAAATATCGTGAGCTCGTTTTTGGTCATCCGCTTAGCACAGTTCTCACAGTGAAGCTTGATGAGAACAATTACTTGCTATGGAGAGGGATGATGCTTGCTATTCTTCGAGGTCAGAATGTTGATGGATATGTGTTAGGCACGAAATCTCAGCCGTCGGAGTTCAAAGAGGTTGTCACCGAAACTGGTAAACAACTTGAACCTAATCCTTCTTATACAGATTAGACAACAGTCGATCAAGCCTTGTTAGGATGGCTATTTGGGTCCATGTCTCCTGCAATTGCTGCAGATGTGGTGAGTTTTACAACATCTAGAGAAGTGTGGAAGGCTTTAGAGAAGGTCTATGGTGCGACAAGCAAGGCTAGGGTTAATCAGCTAAGAGGAGTCTTACAAAACACCAAGAAAGGCACAATGAAGATGGTAGAGTTCTTAGCAATAATGAAACAAGCAGCTGAGAATCTGAAATTGGCGGGTAATCCTATCTCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGATAGTCGGTTCGGTTTTGTCAGTTTTTGACCAAACCGCTAACCGAACCGATCCATTCGGTTCTTAAAAATTGTAAACCGATCCAATGTCCAATATGAGAAAATGTCCAATGGATCGGTTTTATTCGGTTCGGTTTATCCAATGGATCGGTTTTCGGTTTTGGGCCCAATGTGGACTTTTTTATTTTTTAAAAAAATAACAAATTTTCTCTTATAATTTCAAACCAATGCCTTGCACTAATCACTTTTAACTTAAAAGTTATAACCAAATTTTTATTTTTATTTGGTTAAAACATTTTTTCTGTTTTTTGATATGTGGTATTAAATAATCACATGCAAGCAGTTCCAACAATATAAACAAATTAAAGAGAAATAATTAAAAACCCTCCATTTTGCATCTCTATCCTATTCTATTCTATTCAGTATTCACACAAAAGCAAGCTCCTGCATGTTAAACACAGAATAAGGCAAACATTTTGAGAATTGAAAAGGAAAGAAAAAGAGAGTGATTGGGCAAAAATCTTCAAAGATTTAGGGTTCTTTGGAAACATGAAGAGAGCAAGAGATATATGTTGTTTCCAATGGAAGAGAAGTGAAGTTCCACTGAAACTGATTTCATCCTTTTTTTTCATGAAAATGGCTTACCAAATCCCACACCACTTTTCATTTATATACAAAAAAAATTGCAGCAAAGGCGGTGTGTGTGTTCTGTAACTTCAAAATTTCAAATATACAAAGAAATATACAAAAAATATACCGAACTATGTCCACTTGACCTTAGTTTTGTGTTTTGTAACTTGAAATATACAAAAAAAAATTATAACTTAAAATATAAAAGTTATCACAAGATTCACAACCTAATCAGGCGGTCAAACGGTGTGTGTACTTGTTCTATACCTTCTGTTCGACTAGAATAAATTGCAGCAACAACTGGAAGAGTAGAGGCGCGGCTGAAAATGAGCACGGTTGGAATCGACTACACGGCTGCAACAACGAGCACTGCTGGAATCGACTGA

mRNA sequence

ATGGGAGATGAAAATGTGTCTTCTTCCTCTGCTGCAACTATTTCTACTCCAATTCTCACAGTGAAGCTTGATGAGAACAATTACTTGCTATGGAGAGGGATGATGCTTGCTATTCTTCGAGGTCAGAATGTTGATGGATATGTGTTAGGCACGAAATCTCAGCCGTCGGAGTTCAAAGAGGTTGTCACCGAAACTGATGTGGTGAGTTTTACAACATCTAGAGAAGTGTGGAAGGCTTTAGAGAAGGTCTATGGTGCGACAAGCAAGGCTAGGGTTAATCAGCTAAGAGGAGTCTTACAAAACACCAAGAAAGGCACAATGAAGATGGTAGAGTTCTTAGCAATAATGAAACAAGCAGCTGAGAATCTGAAATTGGCGGCAACAACTGGAAGAGTAGAGGCGCGGCTGAAAATGAGCACGGTTGGAATCGACTACACGGCTGCAACAACGAGCACTGCTGGAATCGACTGA

Coding sequence (CDS)

ATGGGAGATGAAAATGTGTCTTCTTCCTCTGCTGCAACTATTTCTACTCCAATTCTCACAGTGAAGCTTGATGAGAACAATTACTTGCTATGGAGAGGGATGATGCTTGCTATTCTTCGAGGTCAGAATGTTGATGGATATGTGTTAGGCACGAAATCTCAGCCGTCGGAGTTCAAAGAGGTTGTCACCGAAACTGATGTGGTGAGTTTTACAACATCTAGAGAAGTGTGGAAGGCTTTAGAGAAGGTCTATGGTGCGACAAGCAAGGCTAGGGTTAATCAGCTAAGAGGAGTCTTACAAAACACCAAGAAAGGCACAATGAAGATGGTAGAGTTCTTAGCAATAATGAAACAAGCAGCTGAGAATCTGAAATTGGCGGCAACAACTGGAAGAGTAGAGGCGCGGCTGAAAATGAGCACGGTTGGAATCGACTACACGGCTGCAACAACGAGCACTGCTGGAATCGACTGA

Protein sequence

MGDENVSSSSAATISTPILTVKLDENNYLLWRGMMLAILRGQNVDGYVLGTKSQPSEFKEVVTETDVVSFTTSREVWKALEKVYGATSKARVNQLRGVLQNTKKGTMKMVEFLAIMKQAAENLKLAATTGRVEARLKMSTVGIDYTAATTSTAGID
Homology
BLAST of Lag0031123 vs. NCBI nr
Match: XP_022157748.1 (uncharacterized protein LOC111024384 isoform X1 [Momordica charantia])

HSP 1 Score: 131.3 bits (329), Expect = 7.0e-27
Identity = 76/146 (52.05%), Postives = 92/146 (63.01%), Query Frame = 0

Query: 18  ILTVKLDENNYLLWRGMMLAILRGQNVDGYVLGTKSQPSEFKEVVTET------------ 77
           +LTVKLD+ NY LWRGM+LA+LRGQ  DGYVLGT ++P +F  V  ET            
Sbjct: 41  VLTVKLDDKNYSLWRGMVLAVLRGQKFDGYVLGTLAKPPQFL-VSPETEGTSDHLQVNPE 100

Query: 78  -------------------------DVVSFTTSREVWKALEKVYGATSKARVNQLRGVLQ 127
                                    DVV F +SREVWKALE +YGATSKAR+NQLR VLQ
Sbjct: 101 YVEWQAVDQALLGWLFGSMTPSIACDVVDFRSSREVWKALEDLYGATSKARINQLRNVLQ 160

BLAST of Lag0031123 vs. NCBI nr
Match: XP_022157750.1 (uncharacterized protein LOC111024384 isoform X2 [Momordica charantia])

HSP 1 Score: 131.3 bits (329), Expect = 7.0e-27
Identity = 76/146 (52.05%), Postives = 92/146 (63.01%), Query Frame = 0

Query: 18  ILTVKLDENNYLLWRGMMLAILRGQNVDGYVLGTKSQPSEFKEVVTET------------ 77
           +LTVKLD+ NY LWRGM+LA+LRGQ  DGYVLGT ++P +F  V  ET            
Sbjct: 41  VLTVKLDDKNYSLWRGMVLAVLRGQKFDGYVLGTLAKPPQFL-VSPETEGTSDHLQVNPE 100

Query: 78  -------------------------DVVSFTTSREVWKALEKVYGATSKARVNQLRGVLQ 127
                                    DVV F +SREVWKALE +YGATSKAR+NQLR VLQ
Sbjct: 101 YVEWQAVDQALLGWLFGSMTPSIACDVVDFRSSREVWKALEDLYGATSKARINQLRNVLQ 160

BLAST of Lag0031123 vs. NCBI nr
Match: XP_022143579.1 (ankyrin repeat-containing protein NPR4-like [Momordica charantia])

HSP 1 Score: 122.5 bits (306), Expect = 3.3e-24
Identity = 69/143 (48.25%), Postives = 86/143 (60.14%), Query Frame = 0

Query: 19  LTVKLDENNYLLWRGMMLAILRGQNVDGYVLGTKSQPSEFKEVVTET------------- 78
           LTVKLD+ NY LW+GM+LA+L GQ VDGYVL TK+ PS++    ++T             
Sbjct: 35  LTVKLDDKNYTLWKGMVLAVLPGQKVDGYVLRTKTCPSKYTTTTSDTGMLEPTLNPAYEE 94

Query: 79  ----------------------DVVSFTTSREVWKALEKVYGATSKARVNQLRGVLQNTK 127
                                 DVV+  TS EVW ALE ++G+TSKAR+NQLR  LQNTK
Sbjct: 95  WSAVDQAFCGWLFGSMTPSIAADVVNLQTSNEVWTALEMLFGSTSKARINQLRNSLQNTK 154

BLAST of Lag0031123 vs. NCBI nr
Match: XP_038874305.1 (uncharacterized protein LOC120067014 [Benincasa hispida])

HSP 1 Score: 89.0 bits (219), Expect = 4.0e-14
Identity = 54/122 (44.26%), Postives = 69/122 (56.56%), Query Frame = 0

Query: 34  MMLAILRGQNVDGYVLGTKSQPSEF------------------------KEVVTE----- 93
           M LAIL+GQ VDG+VLGTK +P+EF                         +V+ +     
Sbjct: 1   MALAILKGQKVDGFVLGTKPKPAEFLKSTEGGETIELLSNPEFEEWNTVDQVLLDCLLGS 60

Query: 94  ------TDVVSFTTSREVWKALEKVYGATSKARVNQLRGVLQNTKKGTMKMVEFLAIMKQ 121
                  DV+ +  SR+VW ALEK+YGA SKARVNQLR  +QNTKKG MK+  +LA MKQ
Sbjct: 61  MTPSIACDVMDYKNSRDVWTALEKLYGAFSKARVNQLRSAMQNTKKGKMKITNYLAYMKQ 120

BLAST of Lag0031123 vs. NCBI nr
Match: XP_020204211.1 (uncharacterized protein LOC109789622 [Cajanus cajan])

HSP 1 Score: 81.3 bits (199), Expect = 8.4e-12
Identity = 50/173 (28.90%), Postives = 87/173 (50.29%), Query Frame = 0

Query: 4   ENVSSSSAATISTPILTVKLDENNYLLWRGMMLAILRGQNVDGYVLGTKSQPSEF----- 63
           ++ SSS+   I +   ++KLD  NY LW+ ++L  LRG N+DGY+ GT   P EF     
Sbjct: 5   DSSSSSNLKNILSIPYSIKLDRGNYRLWKSLVLPSLRGHNLDGYIFGTTKYPQEFIIDET 64

Query: 64  ---------------------------KEVVTETDVVSFTTSREVWKALEKVYGATSKAR 123
                                      +EV T+  ++ + TS+++W+  + + GA ++ R
Sbjct: 65  GKKNTPTFVYWTSTDQLLLGWLINSMTQEVTTQ--LLHYETSQQIWEDAQSLAGAHTRLR 124

Query: 124 VNQLRGVLQNTKKGTMKMVEFLAIMKQAAENLKLAATTGRVEARLKMSTVGID 145
           +  L+   Q T+KG +K  E+L  MK+ A+NL LA ++  +   +  +  G+D
Sbjct: 125 ITFLKTEFQRTRKGGLKKEEYLTKMKEIADNLALAGSSVSIMDLITQTLAGLD 175

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022157748.17.0e-2752.05uncharacterized protein LOC111024384 isoform X1 [Momordica charantia][more]
XP_022157750.17.0e-2752.05uncharacterized protein LOC111024384 isoform X2 [Momordica charantia][more]
XP_022143579.13.3e-2448.25ankyrin repeat-containing protein NPR4-like [Momordica charantia][more]
XP_038874305.14.0e-1444.26uncharacterized protein LOC120067014 [Benincasa hispida][more]
XP_020204211.18.4e-1228.90uncharacterized protein LOC109789622 [Cajanus cajan][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029472Retrotransposon Copia-like, N-terminalPFAMPF14244Retrotran_gag_3coord: 15..55
e-value: 5.8E-7
score: 29.2
NoneNo IPR availablePANTHERPTHR47481:SF3GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATEDcoord: 1..123
NoneNo IPR availablePANTHERPTHR47481FAMILY NOT NAMEDcoord: 1..123

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0031123.1Lag0031123.1mRNA