Lag0030740 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0030740
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionWD repeat-containing protein 91-like protein
Locationchr11: 963844 .. 964368 (+)
RNA-Seq ExpressionLag0030740
SyntenyLag0030740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCTAGAGAAGAGTTGCAGAGGAATTTTGATCACTTGAATGTGGCTATTGGGAATCAAGAAGCCAGACTGCGTTACCACGAAACTCGAGCCCAAAAAACAGCCGTGTTCTTCCTCGTCTGGCAGCGCGCTTTCTTCTTCGCTATCGCTTCCACATATTCGTCCCTCAAGTGTACTGATTGGGGTATGGTTTTGGCTTTGAACATCTTGTCTTCCTCTCTGTTCTTTCTGCTCTTCCTCAAGGATGCCATTATGTGTTTCTGGGCTCTGTATGTGCTCGACGTGATCCACAAGGAACAGGTCCAAATTGCCCAACACATTGTGGACGCCACGAACCGAGATCATCGTGAGGCTTTAAGTGATGGGTTCGGCTCCAATTTCAGTTTCAGGCTGAGGACACTCAACTATGATTTGTTTCGAATTGTGCTCACCAAAGTTTTCATTGGCCTCACTGTCTCTGCTCTGCTTCCTGTTGTAGCTACTGAGTTATACGTCTGTAAGTACTCGTTGTGCGGACATTGA

mRNA sequence

ATGGCGTCTAGAGAAGAGTTGCAGAGGAATTTTGATCACTTGAATGTGGCTATTGGGAATCAAGAAGCCAGACTGCGTTACCACGAAACTCGAGCCCAAAAAACAGCCGTGTTCTTCCTCGTCTGGCAGCGCGCTTTCTTCTTCGCTATCGCTTCCACATATTCGTCCCTCAAGTGTACTGATTGGGGTATGGTTTTGGCTTTGAACATCTTGTCTTCCTCTCTGTTCTTTCTGCTCTTCCTCAAGGATGCCATTATGTGTTTCTGGGCTCTGTATGTGCTCGACGTGATCCACAAGGAACAGGTCCAAATTGCCCAACACATTGTGGACGCCACGAACCGAGATCATCGTGAGGCTTTAAGTGATGGGTTCGGCTCCAATTTCAGTTTCAGGCTGAGGACACTCAACTATGATTTGTTTCGAATTGTGCTCACCAAAGTTTTCATTGGCCTCACTGTCTCTGCTCTGCTTCCTGTTGTAGCTACTGAGTTATACGTCTGTAAGTACTCGTTGTGCGGACATTGA

Coding sequence (CDS)

ATGGCGTCTAGAGAAGAGTTGCAGAGGAATTTTGATCACTTGAATGTGGCTATTGGGAATCAAGAAGCCAGACTGCGTTACCACGAAACTCGAGCCCAAAAAACAGCCGTGTTCTTCCTCGTCTGGCAGCGCGCTTTCTTCTTCGCTATCGCTTCCACATATTCGTCCCTCAAGTGTACTGATTGGGGTATGGTTTTGGCTTTGAACATCTTGTCTTCCTCTCTGTTCTTTCTGCTCTTCCTCAAGGATGCCATTATGTGTTTCTGGGCTCTGTATGTGCTCGACGTGATCCACAAGGAACAGGTCCAAATTGCCCAACACATTGTGGACGCCACGAACCGAGATCATCGTGAGGCTTTAAGTGATGGGTTCGGCTCCAATTTCAGTTTCAGGCTGAGGACACTCAACTATGATTTGTTTCGAATTGTGCTCACCAAAGTTTTCATTGGCCTCACTGTCTCTGCTCTGCTTCCTGTTGTAGCTACTGAGTTATACGTCTGTAAGTACTCGTTGTGCGGACATTGA

Protein sequence

MASREELQRNFDHLNVAIGNQEARLRYHETRAQKTAVFFLVWQRAFFFAIASTYSSLKCTDWGMVLALNILSSSLFFLLFLKDAIMCFWALYVLDVIHKEQVQIAQHIVDATNRDHREALSDGFGSNFSFRLRTLNYDLFRIVLTKVFIGLTVSALLPVVATELYVCKYSLCGH
Homology
BLAST of Lag0030740 vs. NCBI nr
Match: XP_022157130.1 (uncharacterized protein LOC111023927 [Momordica charantia])

HSP 1 Score: 125.9 bits (315), Expect = 3.3e-25
Identity = 76/173 (43.93%), Postives = 105/173 (60.69%), Query Frame = 0

Query: 6   ELQRNFDHLNVAIGNQEARLRYHETRAQKTAVFFLVWQRAFFFAIASTYSS-LKCTDWGM 65
           EL+RNF+ L   +  QE+R++YHE+RAQ   + +L+W R FFFAI+ T SS LKC DW M
Sbjct: 5   ELKRNFEALKDLVEKQESRVQYHESRAQNITMAYLIWGRLFFFAISQTSSSLLKCIDWWM 64

Query: 66  VLALNILSSSLFFLLFLKDAIMCFWALYVLDVIHKEQVQIAQHIVDATNRDH-----REA 125
           VL L++  + ++FL FL+   M +   + +D+I KEQ +I Q I+ A ++        EA
Sbjct: 65  VLGLSVSCAFVYFLFFLEAVTMLYRVQHQMDIICKEQAEICQQILVARSQLDDVDLAMEA 124

Query: 126 LSDGFGSNFSFRLRTLNYDLFRIVLTKVFIGLTVSALLPVVATELYVCKYSLC 173
                G  FSF ++ L Y  FRIV  K +I  TVSALL V A ELY C +  C
Sbjct: 125 GDSSDGFQFSFHVKLLEYGAFRIVERKFYICATVSALLAVTAIELYACSWLYC 177

BLAST of Lag0030740 vs. NCBI nr
Match: XP_022157172.1 (uncharacterized protein LOC111023951 [Momordica charantia])

HSP 1 Score: 123.2 bits (308), Expect = 2.1e-24
Identity = 77/167 (46.11%), Postives = 107/167 (64.07%), Query Frame = 0

Query: 7   LQRNFDHLNVAIGNQEARLRYHETRAQKTAVFFLVWQRAFFFAIASTYSSLKCTDWGMVL 66
           L+R+F+ L +    QE  LR++E+RAQ   + +L+W+R FFFA++ T S LKC DW +VL
Sbjct: 6   LKRDFEELKLLAEKQEPILRFYESRAQNITMGYLIWERFFFFALSQTSSPLKCIDWRVVL 65

Query: 67  ALNILSSSLFFLLFLKDAIMCFWALYVLDVIHKEQVQIAQHIVDATNRDH----REA--L 126
            L+++ S ++FLLFL+   M +     +D+I KEQ  I Q I+DA N+D      EA  L
Sbjct: 66  GLSLVCSFVYFLLFLEAVTMLYRTQNQMDMICKEQSDICQQILDAGNQDDGGSAMEAGDL 125

Query: 127 SDGFGSNFSFRLR-TLNYDL-FRIVLTKVFIGLTVSALLPVVATELY 166
           SDG   NFSF +R TLNYD  FRI   KV+I   +S+L+ V A ELY
Sbjct: 126 SDGVAFNFSFHMRTTLNYDYSFRIFQKKVYISAIISSLVAVTALELY 172

BLAST of Lag0030740 vs. NCBI nr
Match: XP_022157182.1 (uncharacterized protein LOC111023958 [Momordica charantia] >XP_022157183.1 uncharacterized protein LOC111023958 [Momordica charantia])

HSP 1 Score: 122.1 bits (305), Expect = 4.8e-24
Identity = 76/171 (44.44%), Postives = 100/171 (58.48%), Query Frame = 0

Query: 6   ELQRNFDHLNVAIGNQEARLRYHETRAQKTAVFFLVWQRAFFFAIASTYSSLKCTDWGMV 65
           EL+R F+ L      QE+R+RY+ET+ Q     +L++ R FFF I+ T SS  C DW ++
Sbjct: 5   ELERKFEELKDINEKQESRVRYYETKVQNIVFGYLIFTRLFFFGISQTSSSFNCKDWWVI 64

Query: 66  LALNILSSSLFFLLFLKDAIMCFWALYVLDVIHKEQVQIAQHIVDATNRD----HREALS 125
           LAL++L S ++FLLFL    M F   Y LD+I KE  ++ Q I+ + N+D      E   
Sbjct: 65  LALSLLCSFIYFLLFLDAVAMLFRTQYQLDIICKELKELFQQILVSKNQDDVGLSMETGE 124

Query: 126 DGFGSNFSFRLRTLNYDLFRIVLTKVFIGLTVSALLPVVATELYVCKYSLC 173
              G  F F  + L  D FRIV  KV+I  TVSALL V A ELYV KY LC
Sbjct: 125 SSGGFEFGFHEKMLMLDHFRIVGRKVYIYFTVSALLAVTAIELYVSKYVLC 175

BLAST of Lag0030740 vs. NCBI nr
Match: XP_022157176.1 (uncharacterized protein LOC111023953 isoform X2 [Momordica charantia])

HSP 1 Score: 110.5 bits (275), Expect = 1.4e-20
Identity = 73/171 (42.69%), Postives = 99/171 (57.89%), Query Frame = 0

Query: 6   ELQRNFDHLNVAIGNQEARLRYHETRAQKTAVFFLVWQRAFFFAIASTYSSLKCTDWGMV 65
           EL+R F  L      QE+R+RYHE + QK    +L+  R FFF I+ T SS KC DW ++
Sbjct: 5   ELRRKFGELKDINEKQESRVRYHEAKFQKIVSGYLILTRLFFFGISQT-SSSKCHDWWVI 64

Query: 66  LALNILSSSLFFLLFLKDAIMCFWALYVLDVIHKEQVQIAQHIVDATNRDHREALSDG-- 125
           L+L++L S ++FLLFL  A   +     LD+I KE +++ Q I+ A N+D  +   +G  
Sbjct: 65  LSLSLLCSFVYFLLFLDAATRLYQTKGQLDMICKELIEVCQQILVAQNQDDVDLAMEGGD 124

Query: 126 --FGSNFSFRLRTLNYDLFRIVLTKVFIGLTVSALLPVVATELYVCKYSLC 173
              G  F F  + L  D FR V  KV+I  TV AL+ V A ELYV KY LC
Sbjct: 125 FSDGFEFGFHEKMLVLDHFRFVGRKVYIYFTVCALVAVTAIELYVSKYLLC 174

BLAST of Lag0030740 vs. NCBI nr
Match: ADN33782.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 105.9 bits (263), Expect = 3.5e-19
Identity = 70/176 (39.77%), Postives = 102/176 (57.95%), Query Frame = 0

Query: 6   ELQRNFDHLNVAIGNQEARLRYHETRAQKTAVFFLVWQRAF---FFAIASTYSSLKCTD- 65
           EL+RNFD L +    QE R+RY+ETRAQ  A+  L+W R F    +  +S+ S L CT  
Sbjct: 7   ELKRNFDGLKLLAEKQEQRVRYYETRAQNVAIACLIWDRLFVVGMYHTSSSLSLLNCTPH 66

Query: 66  -WGMVLALNILSSSLFFLLFLKDAIMCFWALYVLDVIHKEQVQIAQHIVDATNRDHREA- 125
            W MVL  ++ S+SL+ L FL+   M + A   LD+I K+Q++I+  I++  + +  EA 
Sbjct: 67  LW-MVLGFSLASTSLYLLFFLEAVFMLYRAQNQLDIISKKQIEISLQILNTGSPNDDEAG 126

Query: 126 ---LSDGFGSNFSFRLRTLNYDLFRIVLTKVFIGLTVSALLPVVATELYVCKYSLC 173
               SD  G   SF+++ L Y    +V  K++I  T+S LL V A E+Y CK  LC
Sbjct: 127 DTFSSDNGGLELSFQVQLLQYHPLTVVQRKIYIASTISTLLAVSAFEVYTCKLLLC 181

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022157130.13.3e-2543.93uncharacterized protein LOC111023927 [Momordica charantia][more]
XP_022157172.12.1e-2446.11uncharacterized protein LOC111023951 [Momordica charantia][more]
XP_022157182.14.8e-2444.44uncharacterized protein LOC111023958 [Momordica charantia] >XP_022157183.1 uncha... [more]
XP_022157176.11.4e-2042.69uncharacterized protein LOC111023953 isoform X2 [Momordica charantia][more]
ADN33782.13.5e-1939.77hypothetical protein [Cucumis melo subsp. melo][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 4..24
NoneNo IPR availablePANTHERPTHR33287:SF8SUBFAMILY NOT NAMEDcoord: 2..173
NoneNo IPR availablePANTHERPTHR33287OS03G0453550 PROTEINcoord: 2..173

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0030740.1Lag0030740.1mRNA