Lag0030646 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0030646
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionprotein TOPLESS
Locationchr11: 52432 .. 52898 (+)
RNA-Seq ExpressionLag0030646
SyntenyLag0030646
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAATGTTCAACTTTTGATGACCGTAGATGCTGATGGAGGCGTTTGTGCAAGTTTCCCGGTAAGTTTTCGTGCAAGTCAATTGAAAAATTAAAAGAAAATTGTAATTAACATTTGCATACTGTTTTTTGTTCATTCCATTTAATATCAAAGGCAAGTCCGCACATCTGCTTTAACAAGGATTGGGCCCTTTTTGCTGTTTCTAGCAATGAGAATGGAATTAAAATCTTAGCAAATGTGGATGGAATCCAACTATTGCAAGCATTTGAAAATCTTTCTTATGATGCATCTAGAACGTCAGAGGCCGGGATAAAGGTAGTTTGATTCTATGTTCAATTAATGTGACTTTTAACCATGTTAATTCTTGTGCTTAATATCTAATTAACTTATATTTAATTTTTGCAGCCCACAGTAAATCTAATTTCAACTGCTACTTGTAGTGTAGGCCTTGCTGAGAGAGCATAG

mRNA sequence

ATGGACAATGTTCAACTTTTGATGACCGTAGATGCTGATGGAGGCGTTTGTGCAAGTTTCCCGGCAAGTCCGCACATCTGCTTTAACAAGGATTGGGCCCTTTTTGCTGTTTCTAGCAATGAGAATGGAATTAAAATCTTAGCAAATGTGGATGGAATCCAACTATTGCAAGCATTTGAAAATCTTTCTTATGATGCATCTAGAACGTCAGAGGCCGGGATAAAGCCCACAGTAAATCTAATTTCAACTGCTACTTGTAGTGTAGGCCTTGCTGAGAGAGCATAG

Coding sequence (CDS)

ATGGACAATGTTCAACTTTTGATGACCGTAGATGCTGATGGAGGCGTTTGTGCAAGTTTCCCGGCAAGTCCGCACATCTGCTTTAACAAGGATTGGGCCCTTTTTGCTGTTTCTAGCAATGAGAATGGAATTAAAATCTTAGCAAATGTGGATGGAATCCAACTATTGCAAGCATTTGAAAATCTTTCTTATGATGCATCTAGAACGTCAGAGGCCGGGATAAAGCCCACAGTAAATCTAATTTCAACTGCTACTTGTAGTGTAGGCCTTGCTGAGAGAGCATAG

Protein sequence

MDNVQLLMTVDADGGVCASFPASPHICFNKDWALFAVSSNENGIKILANVDGIQLLQAFENLSYDASRTSEAGIKPTVNLISTATCSVGLAERA
Homology
BLAST of Lag0030646 vs. NCBI nr
Match: PON51665.1 (Topless-like WD40 repeat containing protein [Parasponia andersonii])

HSP 1 Score: 125.6 bits (314), Expect = 2.3e-25
Identity = 66/94 (70.21%), Postives = 76/94 (80.85%), Query Frame = 0

Query: 1   MDNVQLLMTVDADGGVCASFPASPHICFNKDWALFAVSSNENGIKILANVDGIQLLQAFE 60
           MDNVQLL TVDADGG+    PASP I FNKD +L AVS+N+NGIK+LAN DG++LL+ FE
Sbjct: 623 MDNVQLLTTVDADGGL----PASPRIRFNKDGSLLAVSANDNGIKVLANTDGLRLLRTFE 682

Query: 61  NLSYDASRTSEAGIKPTVNLISTATCSVGLAERA 95
           NLSYDASRTSEA  KPTV+ IS A  S GL+ERA
Sbjct: 683 NLSYDASRTSEAVAKPTVSPISAAATSAGLSERA 712

BLAST of Lag0030646 vs. NCBI nr
Match: XP_023526905.1 (protein TPR3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 122.5 bits (306), Expect = 2.0e-24
Identity = 65/91 (71.43%), Postives = 70/91 (76.92%), Query Frame = 0

Query: 1   MDNVQLLMTVDADGGVCASFPASPHICFNKDWALFAVSSNENGIKILANVDGIQLLQAFE 60
           MDNVQLL TVDADGG+    PASP I FNKD  L AVS NENGIKILANVDG++LL+ FE
Sbjct: 625 MDNVQLLTTVDADGGL----PASPRIRFNKDGTLLAVSGNENGIKILANVDGVRLLRTFE 684

Query: 61  NLSYDASRTSEAGIKPTVNLISTATCSVGLA 92
           NLSYDASRTSEAG KPT+N IS A      A
Sbjct: 685 NLSYDASRTSEAGTKPTINPISAAAAVAAAA 711

BLAST of Lag0030646 vs. NCBI nr
Match: KAG7018371.1 (Protein TOPLESS [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122.5 bits (306), Expect = 2.0e-24
Identity = 65/91 (71.43%), Postives = 70/91 (76.92%), Query Frame = 0

Query: 1   MDNVQLLMTVDADGGVCASFPASPHICFNKDWALFAVSSNENGIKILANVDGIQLLQAFE 60
           MDNVQLL TVDADGG+    PASP I FNKD  L AVS NENGIKILANVDG++LL+ FE
Sbjct: 625 MDNVQLLTTVDADGGL----PASPRIRFNKDGTLLAVSGNENGIKILANVDGVRLLRTFE 684

Query: 61  NLSYDASRTSEAGIKPTVNLISTATCSVGLA 92
           NLSYDASRTSEAG KPT+N IS A      A
Sbjct: 685 NLSYDASRTSEAGTKPTINPISAAAAVAAAA 711

BLAST of Lag0030646 vs. NCBI nr
Match: XP_022955701.1 (protein TOPLESS [Cucurbita moschata])

HSP 1 Score: 122.5 bits (306), Expect = 2.0e-24
Identity = 65/91 (71.43%), Postives = 70/91 (76.92%), Query Frame = 0

Query: 1   MDNVQLLMTVDADGGVCASFPASPHICFNKDWALFAVSSNENGIKILANVDGIQLLQAFE 60
           MDNVQLL TVDADGG+    PASP I FNKD  L AVS NENGIKILANVDG++LL+ FE
Sbjct: 625 MDNVQLLTTVDADGGL----PASPRIRFNKDGTLLAVSGNENGIKILANVDGVRLLRTFE 684

Query: 61  NLSYDASRTSEAGIKPTVNLISTATCSVGLA 92
           NLSYDASRTSEAG KPT+N IS A      A
Sbjct: 685 NLSYDASRTSEAGTKPTINPISAAAAVAAAA 711

BLAST of Lag0030646 vs. NCBI nr
Match: XP_022980163.1 (protein TOPLESS [Cucurbita maxima])

HSP 1 Score: 122.5 bits (306), Expect = 2.0e-24
Identity = 65/91 (71.43%), Postives = 70/91 (76.92%), Query Frame = 0

Query: 1   MDNVQLLMTVDADGGVCASFPASPHICFNKDWALFAVSSNENGIKILANVDGIQLLQAFE 60
           MDNVQLL TVDADGG+    PASP I FNKD  L AVS NENGIKILANVDG++LL+ FE
Sbjct: 625 MDNVQLLTTVDADGGL----PASPRIRFNKDGTLLAVSGNENGIKILANVDGVRLLRTFE 684

Query: 61  NLSYDASRTSEAGIKPTVNLISTATCSVGLA 92
           NLSYDASRTSEAG KPT+N IS A      A
Sbjct: 685 NLSYDASRTSEAGTKPTINPISAAAAVAAAA 711

BLAST of Lag0030646 vs. ExPASy Swiss-Prot
Match: Q10NY2 (Protein TPR3 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR3 PE=1 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.7e-18
Identity = 50/95 (52.63%), Postives = 65/95 (68.42%), Query Frame = 0

Query: 1   MDNVQLLMTVDADGGVCASFPASPHICFNKDWALFAVSSNENGIKILANVDGIQLLQAFE 60
           MDN  LL T+DADGG+    PASP + FNK+  L AVS++ENGIKILAN DG++LL+  E
Sbjct: 621 MDNTSLLTTIDADGGL----PASPRVRFNKEGTLLAVSTHENGIKILANADGVRLLRTLE 680

Query: 61  NLSYDASRT-SEAGIKPTVNLISTATCSVGLAERA 95
           N S+DASR+ SE   KP +N ++ A  +   A  A
Sbjct: 681 NRSFDASRSASETVTKPLMNPLTAAAAAAASAAAA 711

BLAST of Lag0030646 vs. ExPASy Swiss-Prot
Match: Q94AI7 (Protein TOPLESS OS=Arabidopsis thaliana OX=3702 GN=TPL PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 5.6e-14
Identity = 47/98 (47.96%), Postives = 61/98 (62.24%), Query Frame = 0

Query: 1   MDNVQLLMTVDADGGVCASFPASPHICFNKDWALFAVSSNENGIKILANVDGIQLLQAFE 60
           MD VQLL  +D DGG+     ASP I FNK+ +L AVS NEN IKI+AN DG++LL  FE
Sbjct: 626 MDAVQLLTAIDGDGGL----QASPRIRFNKEGSLLAVSGNENVIKIMANSDGLRLLHTFE 685

Query: 61  NLSYDASRTSEAGIKPTVNLISTATC----SVGLAERA 95
           N+S ++S       KP +N I+ A      S G A+R+
Sbjct: 686 NISSESS-------KPAINSIAAAAAAAATSAGHADRS 712

BLAST of Lag0030646 vs. ExPASy Swiss-Prot
Match: Q0J7U6 (Protein TOPLESS-RELATED PROTEIN 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR2 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.6e-13
Identity = 38/83 (45.78%), Postives = 54/83 (65.06%), Query Frame = 0

Query: 1   MDNVQLLMTVDADGGVCASFPASPHICFNKDWALFAVSSNENGIKILANVDGIQLLQAFE 60
           MDN  +L T D DGG+    PASP + FN++ +L AV++NENGIKILAN DG +LL+  E
Sbjct: 617 MDNTNILTTTDCDGGL----PASPRLRFNREGSLLAVTANENGIKILANTDGQRLLRMLE 676

Query: 61  NLSYDASRTSEAGIKPTVNLIST 84
           + +Y+ SR     I     +++T
Sbjct: 677 SRAYEGSRGPPQQINTKPPIVNT 695

BLAST of Lag0030646 vs. ExPASy Swiss-Prot
Match: Q0WV90 (Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3)

HSP 1 Score: 74.7 bits (182), Expect = 6.2e-13
Identity = 40/81 (49.38%), Postives = 54/81 (66.67%), Query Frame = 0

Query: 1   MDNVQLLMTVDADGGVCASFPASPHICFNKDWALFAVSSNENGIKILANVDGIQLLQAFE 60
           MD +QLL  +DADGG+     ASP I FNK+ +L AVS+N+N IK++AN DG++LL   E
Sbjct: 626 MDTIQLLTAIDADGGL----QASPRIRFNKEGSLLAVSANDNMIKVMANSDGLRLLHTVE 685

Query: 61  NLSYDASRTSEAGIKPTVNLI 82
           NLS ++S       KP +N I
Sbjct: 686 NLSSESS-------KPAINSI 695

BLAST of Lag0030646 vs. ExPASy Swiss-Prot
Match: Q9LRZ0 (Topless-related protein 2 OS=Arabidopsis thaliana OX=3702 GN=TPR2 PE=1 SV=2)

HSP 1 Score: 69.3 bits (168), Expect = 2.6e-11
Identity = 39/92 (42.39%), Postives = 57/92 (61.96%), Query Frame = 0

Query: 1   MDNVQLLMTVDADGGVCASFPASPHICFNKDWALFAVSSNENGIKILANVDGIQLLQAFE 60
           MDN  LL  V+A+GG+    P  P + FNKD  L AV++ +NG KILAN DG++ L+AFE
Sbjct: 616 MDNTNLLTVVEAEGGL----PNLPRLRFNKDGNLLAVTTADNGFKILANTDGLRTLRAFE 675

Query: 61  NLSYDASRTSEAGIKPTVNLISTATCSVGLAE 93
             S++AS+ S      T  + S+ + ++G  E
Sbjct: 676 ARSFEASKASIDMKVSTSAMASSISPAIGKIE 703

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PON51665.12.3e-2570.21Topless-like WD40 repeat containing protein [Parasponia andersonii][more]
XP_023526905.12.0e-2471.43protein TPR3-like [Cucurbita pepo subsp. pepo][more]
KAG7018371.12.0e-2471.43Protein TOPLESS [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022955701.12.0e-2471.43protein TOPLESS [Cucurbita moschata][more]
XP_022980163.12.0e-2471.43protein TOPLESS [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Q10NY21.7e-1852.63Protein TPR3 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR3 PE=1 SV=1[more]
Q94AI75.6e-1447.96Protein TOPLESS OS=Arabidopsis thaliana OX=3702 GN=TPL PE=1 SV=1[more]
Q0J7U63.6e-1345.78Protein TOPLESS-RELATED PROTEIN 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TP... [more]
Q0WV906.2e-1349.38Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3[more]
Q9LRZ02.6e-1142.39Topless-related protein 2 OS=Arabidopsis thaliana OX=3702 GN=TPR2 PE=1 SV=2[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR44083:SF7TOPLESS-LIKE PROTEINcoord: 1..94
IPR027728Topless familyPANTHERPTHR44083TOPLESS-RELATED PROTEIN 1-RELATEDcoord: 1..94

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0030646.1Lag0030646.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009791 post-embryonic development
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0048608 reproductive structure development
biological_process GO:0048367 shoot system development