Lag0029489 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0029489
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr8: 39460740 .. 39463211 (+)
RNA-Seq ExpressionLag0029489
SyntenyLag0029489
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGGTCGGCGAACGGAAGAAAGCTGCTGTTTTCGTGAAGAAGAGGTGGAGAAAAACGCTGAGTTCGTGGGTGGGTGGTGAAGTGTGAAACGAAAAGAGGAAAAGGCAATAATGGGAATTGGGAAAATTAAAAAACCCTAAGTGGAGCTGGAGCAAAACCCAGGTTTTTGTTTCCTATTTCTTTTTTTTTTTTAATTAAACAGCCCACCAGAAATTGGGCTTCAATTTCAGCCCACTTCAACTTAAAAATTCTGAAGCAGTCGTGTCCTGGGCGTGTCCTAGCCGTATCCAGCTGTGTAGGACACGCAAAATTGCGTGACGGACACGTGTCCGGAGCGTGTCAGGACGAATCCGTGTCTGACACAGATCCTCCCCCCATTTTGGCGTGTCCGTGCTTCATAGGCCAGGACCAATAATGTTCCATGGGAGGATCCTCATCAGAAATGATTACCACCCCAATTCAACTAAAATATATTCCCTATCATAATTAATAGTAGACACCAATTCCATCAAATTCCTAACCCCCTCTCTCTTATATCCTTGAGCATTGTGCTTTTAACACCAATTTACCAACATTTATTACCATGAAGTCATTCGATATGGAGATGCAAAGTGCAAAGTCATTTGCCAAATTGAAGAAGTGCTACTTAATTGCATGGTAATGCAAGGAGTGGCAATAGGTTTAGGGATGAATTGAAAAATTAAATCATTAGAAGCAAAGAAGTGATCTTCAATGAAAAGGTTTGGCATAAGGATAGAAGTAGAACTATCTTTCCTTGTTTAAGCTCCCGATCAAGGTTGCCAAAATTTTGGAGAAGCTTATTAGAGATTTTTTCTGGGAAGGATCTCGAGGAAATGGTGGTATGCATAACATTAATTGGGAGACAACTCAGCTCCCTATTCTTTTGGGTGGTTTGAATATTGGCCATTTTAGAATTCGAAATATGGCTCTTATGGCTAAATGGATTTGGAGATTCTTACATGAACGGGATTCTCTTTGGTATAATATCATTGTCGGTAAATACTATTATGCTAATGATAATTTTAACTAGCCACACAAAATTTTGAGAGGTCCTTACAAATCGCCGTGGCGTCATATTTGTTCTACAATTGATCTTATTGAAAATAGGATTCAGAGAGTTCTTGGAAATGGTCATAATATTTATTTCTGGCATGACTGTTGGCTACCATGTGGAATTATTGCAGAAGCATATCCAAGACTATTTCGATTAACTACCAGATCTACTGCTATGGTGGACCAAGTCTGGAATAGTTCCAATGCGGCTTGGGATTTGGGACTTAGACGTAATCTAAATGATTTGGAGGTAATTGAATGGACTAGTCTCTCTCATATTCTTTTATCTGTTACGATTCGATCAGTGAATGACTCATGGTGTCGGCCTCTTGATCATTCTAAGAGTTTTTCTGTCAAATCTCTTATGTCTGATATGCTTACTGATTGTGATTCCACACCATCCAATTTTTACTTGGAGCTTTGGAAAGATGTCTATCCTAAGAAAATCAAAATTTTTCTATGGGAGCTTAGCCATGGAGGTATTAATACGGCAGATCGATTGCAAAGGAGAATGCCTCATCTGACTCTCTCTCCATCTTGTTGTGTGATGTGTTATTCTGCCCCAGAAAATCCTTGTCATCTTTTTGTTCACTGCCTTTATGCCTCTAAATATTGGTTAATCATGAAGAATGCCTTTGGTTGGTCCTTGATCTTGCCCAACAATATTTATGGAATTCTCGACTATGTGTTTACAGGACACCCATTTCATGGTGTGAAAAAAATCTTATGTTTATCTATTAACAGAGTATTCTTCTGGTACCTTTGGTGTGAGCGAAATGGTCGACTTTTCAGGGACGTCTCCTCAACTTTTGACTCTTTTTGGGATTTAATTATCTTTCATGCTATGTATTGGTGTAAAAATAAACACCCTTTTAATGCATACAGTCTCTCTACTTTGATTACTAGTGGAGATCTTTATTGTAATTGTCTTTAGACGTTGGGTGTTTTTTTAGCATCCTTTATTTCATCTATCAATGAAATGAATTGTTTCTCTTCTAAAAAAAAAAGGATAGAAGTAGAACAAGTGATATGTATTCAACTCAGATCAAGTTGAATACATATCACTTGTTCTACTTTTATTAGTTTATTAGCCCGACTATTGGTCTCATTGGCAATCGCATCCAAAAAGAAATGACCTTCACACTTCTTTTTGGCATGAAGCTTGGCCGAATAGTGAAGTTCTTGCTACTGTTTTCCCAAGGTCATCGTTTGTCTACCAGGCCTGAATCTGATGTTACTGACTTACTGTTGCCCATGTTTGGAATTCAGATCAAAAAGCATGGGATTTGAATCTCCAGAGGAATCTTAATGAGTTTGAAATTGTAGAATGGGCTAACCCATCAAATCTTCTATCTTCGGTTACTTTGAGGAATACAAATGACTCTCGGTACTAG

mRNA sequence

ATGGGTGGTCGGCGAACGGAAGAAAGCTGCTGTTTTCGTGAAGAAGAGGTGGAGAAAAACGCTGAGTTCCTCCCGATCAAGGTTGCCAAAATTTTGGAGAAGCTTATTAGAGATTTTTTCTGGGAAGGATCTCGAGGAAATGGTGGTATGCATAACATTAATTGGGAGACAACTCAGCTCCCTATTCTTTTGGGTGGTTTGAATATTGGCCATTTTAGAATTCGAAATATGGCTCTTATGGCTAAATGGATTTGGAGATTCTTACATGAACGGGATTCTCTTTGGTATAATATCATTGTCGAAGCATATCCAAGACTATTTCGATTAACTACCAGATCTACTGCTATGGTGGACCAAGTCTGGAATAGTTCCAATGCGGCTTGGGATTTGGGACTTAGACGTAATCTAAATGATTTGGAGGTAATTGAATGGACTAGTCTCTCTCATATTCTTTTATCTGTTACGATTCGATCAGTGAATGACTCATGGTGTCGGCCTCTTGATCATTCTAAGAGTTTTTCTGTCAAATCTCTTATGTCTGATATGCTTACTGATTGTGATTCCACACCATCCAATTTTTACTTGGAGCTTTGGAAAGATGTCTATCCTAAGAAAATCAAAATTTTTCTATGGGAGCTTAGCCATGGAGGTATTAATACGGCAGATCGATTGCAAAGGAGAATGCCTCATCTGACTCTCTCTCCATCTTGTTGTGTGATGTGTTATTCTGCCCCAGAAAATCCTTGTCATCTTTTTGTTCACTGCCTTTATGCCTCTAAATATTGGTTAATCATGAAGAATGCCTTTGGTTGGTCCTTGATCTTGCCCAACAATATTTATGGAATTCTCGACTATGTGTTTACAGGACACCCATTTCATGATCAAAAAGCATGGGATTTGAATCTCCAGAGGAATCTTAATGAGTTTGAAATTGTAGAATGGGCTAACCCATCAAATCTTCTATCTTCGGTTACTTTGAGGAATACAAATGACTCTCGGTACTAG

Coding sequence (CDS)

ATGGGTGGTCGGCGAACGGAAGAAAGCTGCTGTTTTCGTGAAGAAGAGGTGGAGAAAAACGCTGAGTTCCTCCCGATCAAGGTTGCCAAAATTTTGGAGAAGCTTATTAGAGATTTTTTCTGGGAAGGATCTCGAGGAAATGGTGGTATGCATAACATTAATTGGGAGACAACTCAGCTCCCTATTCTTTTGGGTGGTTTGAATATTGGCCATTTTAGAATTCGAAATATGGCTCTTATGGCTAAATGGATTTGGAGATTCTTACATGAACGGGATTCTCTTTGGTATAATATCATTGTCGAAGCATATCCAAGACTATTTCGATTAACTACCAGATCTACTGCTATGGTGGACCAAGTCTGGAATAGTTCCAATGCGGCTTGGGATTTGGGACTTAGACGTAATCTAAATGATTTGGAGGTAATTGAATGGACTAGTCTCTCTCATATTCTTTTATCTGTTACGATTCGATCAGTGAATGACTCATGGTGTCGGCCTCTTGATCATTCTAAGAGTTTTTCTGTCAAATCTCTTATGTCTGATATGCTTACTGATTGTGATTCCACACCATCCAATTTTTACTTGGAGCTTTGGAAAGATGTCTATCCTAAGAAAATCAAAATTTTTCTATGGGAGCTTAGCCATGGAGGTATTAATACGGCAGATCGATTGCAAAGGAGAATGCCTCATCTGACTCTCTCTCCATCTTGTTGTGTGATGTGTTATTCTGCCCCAGAAAATCCTTGTCATCTTTTTGTTCACTGCCTTTATGCCTCTAAATATTGGTTAATCATGAAGAATGCCTTTGGTTGGTCCTTGATCTTGCCCAACAATATTTATGGAATTCTCGACTATGTGTTTACAGGACACCCATTTCATGATCAAAAAGCATGGGATTTGAATCTCCAGAGGAATCTTAATGAGTTTGAAATTGTAGAATGGGCTAACCCATCAAATCTTCTATCTTCGGTTACTTTGAGGAATACAAATGACTCTCGGTACTAG

Protein sequence

MGGRRTEESCCFREEEVEKNAEFLPIKVAKILEKLIRDFFWEGSRGNGGMHNINWETTQLPILLGGLNIGHFRIRNMALMAKWIWRFLHERDSLWYNIIVEAYPRLFRLTTRSTAMVDQVWNSSNAAWDLGLRRNLNDLEVIEWTSLSHILLSVTIRSVNDSWCRPLDHSKSFSVKSLMSDMLTDCDSTPSNFYLELWKDVYPKKIKIFLWELSHGGINTADRLQRRMPHLTLSPSCCVMCYSAPENPCHLFVHCLYASKYWLIMKNAFGWSLILPNNIYGILDYVFTGHPFHDQKAWDLNLQRNLNEFEIVEWANPSNLLSSVTLRNTNDSRY
Homology
BLAST of Lag0029489 vs. NCBI nr
Match: RVW29080.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 158.3 bits (399), Expect = 1.2e-34
Identity = 101/324 (31.17%), Postives = 145/324 (44.75%), Query Frame = 0

Query: 1   MGGRRT-EESCCFREEEVEKNAEFLPIKVAKILEKLIRDFFWEGSRGNGGMHNINWETTQ 60
           +GGR T  +SC         +   +P+ +A  +EK+ RDF W G+      H I WE   
Sbjct: 224 LGGRITLIQSCLSHIPSYFLSLFKIPVSIASKIEKMQRDFLWSGAGEGKRDHLIRWEVVS 283

Query: 61  LPILLGGLNIGHFRIRNMALMAKWIWRFLHERDSLWYNIIVEAY---------------- 120
            P  +GGL  G   +RN AL+ KW+WRFL ER  LW+ +I   Y                
Sbjct: 284 RPREMGGLGFGKTSMRNSALLGKWLWRFLRERSDLWHKVIASIYGTHPNGWDANMVVRWS 343

Query: 121 --------------PRLFRLTTRSTAMVDQVWNSSNAAWDLGLRRNLNDLEVIEWTSLSH 180
                           L  ++ ++  + + + NS   +W+   RRNL D E+     L  
Sbjct: 344 HRCPWKAIAQVFKSSPLLVISVKNLTVSNVLGNSLPLSWNFNFRRNLTDSEIDLLQRLMS 403

Query: 181 ILLSVTIR-SVNDSWCRPLDHSKSFSVKSLMSDMLTDCDS---TPSNFYLELWKDVYPKK 240
            L SV +  S +DS    L  S SFSVKS    +  D +     P+ F   LW    P K
Sbjct: 404 SLHSVLLSPSSSDSRAWSLSSSGSFSVKSFFYALSKDSNPLMFLPAKF---LWSSKVPSK 463

Query: 241 IKIFLWELSHGGINTADRLQRRMPHLTLSPSCCVMCYSAPENPCHLFVHCLYASKYWLIM 290
           +K   W ++HG +NT D+LQ R P+  L P  C++C    E+  HLF+HC      W  +
Sbjct: 464 VKALAWLVAHGKVNTNDKLQLRRPYKALCPQWCILCKGNGESINHLFLHCPVTIGLWHRL 523

BLAST of Lag0029489 vs. NCBI nr
Match: VVA25489.1 (Hypothetical predicted protein, partial [Prunus dulcis])

HSP 1 Score: 156.8 bits (395), Expect = 3.4e-34
Identity = 104/363 (28.65%), Postives = 153/363 (42.15%), Query Frame = 0

Query: 24  LPIKVAKILEKLIRDFFWEGSRGNGGMHNINWETTQLPILLGGLNIGHFRIRNMALMAKW 83
           +PI VA  +EKL+RDF WEG  G    H ++WE        GGL +G  R R++AL AKW
Sbjct: 626 IPIGVANRIEKLMRDFLWEGLDGKSN-HAVSWEVVGKAKFCGGLGVGSLRARSVALRAKW 685

Query: 84  IWRFLHERDSLWYNII-------------------------------------------- 143
           +WRF +E  +LW+ +I                                            
Sbjct: 686 LWRFPNEPHALWHKVIRSIYGMDTNGWDAKPATRGSCRCPWRDISSGYNLFLQGCVFVVG 745

Query: 144 ------------------VEAYPRLFRLTTRSTAMVDQVWNSSN--AAWDLGLRRNLNDL 203
                              E +PRLF L+ +    +    +S     +WD G RRNLN+L
Sbjct: 746 SGVRVRFWEDDWGRGGVLKEVFPRLFNLSRKQNHNISSFASSDGLLLSWDFGFRRNLNEL 805

Query: 204 EVIEWTSLSHILLSVTI-RSVNDSWCRPLDHSKSFSVKSLMSDMLTDCDSTPSNFYLELW 263
           E+ E   L  +L  V +  S  D      D S  F+  SL S +    +      Y ++W
Sbjct: 806 EITEVARLLDLLEGVRLFTSRLDKRIWKFDPSGLFTCHSLCSHIQNCGEGETFPPYTQIW 865

Query: 264 KDVYPKKIKIFLWELSHGGINTADRLQRRMPHLTLSPSCCVMCYSAPENPCHLFVHCLYA 311
           K   P K+KIF+W+   G +NT D LQRR P+L +SP  C +C  A ++  HL +HC ++
Sbjct: 866 KAKTPLKVKIFVWQAVLGKLNTGDTLQRRCPYLCMSPHWCALCNMAGDSVNHLLLHCPFS 925

BLAST of Lag0029489 vs. NCBI nr
Match: VVA39726.1 (Hypothetical predicted protein, partial [Prunus dulcis])

HSP 1 Score: 155.2 bits (391), Expect = 9.8e-34
Identity = 104/363 (28.65%), Postives = 152/363 (41.87%), Query Frame = 0

Query: 24  LPIKVAKILEKLIRDFFWEGSRGNGGMHNINWETTQLPILLGGLNIGHFRIRNMALMAKW 83
           +PI VA  +EKL+RDF WEG  G    H ++WE        GGL +G  R R+  L AKW
Sbjct: 626 IPIGVANRIEKLMRDFLWEGLDGKRN-HAVSWEVVGKAKFCGGLGVGSLRARSAVLRAKW 685

Query: 84  IWRFLHERDSLWYNII-------------------------------------------- 143
           +WRF +E  +LW+ +I                                            
Sbjct: 686 LWRFPNEPHALWHKVIRSIYGMDTNGWDAKPATRGSCRSPWRDISSGYNLFLRGCVFVVG 745

Query: 144 ------------------VEAYPRLFRLTTRSTAMVDQVWNSSN--AAWDLGLRRNLNDL 203
                              E +PRLF L+ +    +    +S     +WD G RRNLN+L
Sbjct: 746 CGVRVRFWEDDWSQGGVLKEVFPRLFNLSRKQNHNISSFTSSDGLPLSWDFGFRRNLNEL 805

Query: 204 EVIEWTSLSHILLSVTI-RSVNDSWCRPLDHSKSFSVKSLMSDMLTDCDSTPSNFYLELW 263
           E+ E   L  +L  V +  S  D     LD S  F+  SL S +    +      Y ++W
Sbjct: 806 EITEVARLLDLLEGVRLFTSRLDKRIWKLDPSGLFTCHSLCSHIQNCGEGEIFPPYTQIW 865

Query: 264 KDVYPKKIKIFLWELSHGGINTADRLQRRMPHLTLSPSCCVMCYSAPENPCHLFVHCLYA 311
           K   P K+KIF+W+   G +NT D LQRR P+L +SP  C +C  A ++  HL +HC ++
Sbjct: 866 KAKTPLKVKIFVWQAVLGKLNTGDTLQRRCPYLCISPHWCALCNKAGDSVDHLLLHCPFS 925

BLAST of Lag0029489 vs. NCBI nr
Match: BBN69746.1 (VIRB2-interacting protein 2 [Prunus dulcis])

HSP 1 Score: 154.5 bits (389), Expect = 1.7e-33
Identity = 103/363 (28.37%), Postives = 152/363 (41.87%), Query Frame = 0

Query: 24  LPIKVAKILEKLIRDFFWEGSRGNGGMHNINWETTQLPILLGGLNIGHFRIRNMALMAKW 83
           +PI VA  +EKL+RDF WEG  G    H ++WE        GGL +G  R R++AL AKW
Sbjct: 569 IPIGVANRIEKLMRDFLWEGLDGKSN-HAVSWEVVGKAKFCGGLGVGSLRARSVALRAKW 628

Query: 84  IWRFLHERDSLWYNII-------------------------------------------- 143
           +WRF +E  +LW+ +I                                            
Sbjct: 629 LWRFPNEPHALWHKVIRSIYGMDTNGWDAKPATRGSCRCPWRDISSGYNLFLQGCVFVVG 688

Query: 144 ------------------VEAYPRLFRLTTRSTAMVDQVWNSSN--AAWDLGLRRNLNDL 203
                              E +PRLF L+ +    +    +S     +WD G RRNLN+L
Sbjct: 689 SGVRVRFWEDDWGRGGVLKEVFPRLFNLSRKQNHNISSFASSDGLLLSWDFGFRRNLNEL 748

Query: 204 EVIEWTSLSHILLSVTI-RSVNDSWCRPLDHSKSFSVKSLMSDMLTDCDSTPSNFYLELW 263
           E+ E   L  +L  V +  S  D      D S  F+  S  S +    +      Y ++W
Sbjct: 749 EITEVARLLDLLEGVRLFTSRLDKRIWKFDPSGLFTCHSFCSHIQNCGEGEIFPPYTQIW 808

Query: 264 KDVYPKKIKIFLWELSHGGINTADRLQRRMPHLTLSPSCCVMCYSAPENPCHLFVHCLYA 311
           K   P K+KIF+W+   G +NT D LQRR P+L +SP  C +C  A ++  HL +HC ++
Sbjct: 809 KAKTPLKVKIFVWQAVLGKLNTGDTLQRRCPYLCMSPHWCALCNMAGDSVNHLLLHCPFS 868

BLAST of Lag0029489 vs. NCBI nr
Match: BBN67784.1 (VIRB2-interacting protein 2 [Prunus dulcis])

HSP 1 Score: 154.5 bits (389), Expect = 1.7e-33
Identity = 103/363 (28.37%), Postives = 152/363 (41.87%), Query Frame = 0

Query: 24   LPIKVAKILEKLIRDFFWEGSRGNGGMHNINWETTQLPILLGGLNIGHFRIRNMALMAKW 83
            +PI VA  +EKL+RDF WEG  G    H ++WE        GGL +G  R R++AL AKW
Sbjct: 1276 IPIGVANRIEKLMRDFLWEGLDGKSN-HAVSWEVVGKAKFCGGLGVGSLRARSVALRAKW 1335

Query: 84   IWRFLHERDSLWYNII-------------------------------------------- 143
            +WRF +E  +LW+ +I                                            
Sbjct: 1336 LWRFPNEPHALWHKVIRSIYGMDTNGWDAKPATRGSCRCPWRDISSGYNLFLQGCVFVVG 1395

Query: 144  ------------------VEAYPRLFRLTTRSTAMVDQVWNSSN--AAWDLGLRRNLNDL 203
                               E +PRLF L+ +    +    +S     +WD G RRNLN+L
Sbjct: 1396 SGVRVRFWEDDWGRGGVLKEVFPRLFNLSRKQNHNISSFASSDGLLLSWDFGFRRNLNEL 1455

Query: 204  EVIEWTSLSHILLSVTI-RSVNDSWCRPLDHSKSFSVKSLMSDMLTDCDSTPSNFYLELW 263
            E+ E   L  +L  V +  S  D      D S  F+  S  S +    +      Y ++W
Sbjct: 1456 EITEVARLLDLLEGVRLFTSRLDKRIWKFDPSGLFTCHSFCSHIQNCGEGEIFPPYTQIW 1515

Query: 264  KDVYPKKIKIFLWELSHGGINTADRLQRRMPHLTLSPSCCVMCYSAPENPCHLFVHCLYA 311
            K   P K+KIF+W+   G +NT D LQRR P+L +SP  C +C  A ++  HL +HC ++
Sbjct: 1516 KAKTPLKVKIFVWQAVLGKLNTGDTLQRRCPYLCMSPHWCALCNMAGDSVNHLLLHCPFS 1575

BLAST of Lag0029489 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.3e-08
Identity = 62/302 (20.53%), Postives = 109/302 (36.09%), Query Frame = 0

Query: 24  LPIKVAKILEKLIRDFFWEGSRGNGGMHNINWETTQLPILLGGLNIGHFRIRNMALMAKW 83
           LP  +   L++L R F W  +      H + W     P   GGL +   +  N AL++K 
Sbjct: 58  LPQSILNRLDQLSRTFLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKV 117

Query: 84  IWRFLHERDSLWYNIIVEAYPRLFRLTTRSTAMVDQVWNSSNAAWDLGLRRNL------- 143
            WR L E++SLW  ++ + Y  +  +      +    W+S+  +  +GLR  +       
Sbjct: 118 GWRLLQEKNSLWTLVLQKKY-HVGEIRDSRWLIPKGSWSSTWRSIAIGLRDVVSHGVGWI 177

Query: 144 --NDLEVIEWT------------------------------------------------- 203
             +  ++  WT                                                 
Sbjct: 178 PGDGQQIRFWTDRWVSGKPLLELDNGERPTDCDTVVAKDLWIPGRGWDFAKIDPYTTNNT 237

Query: 204 --SLSHILLSVTIRSVNDSWCRPLDHSKSFSVKSLMSDMLTDCDSTP--SNFYLELWKDV 263
              L  ++L + +    D           FSV+S    +  D    P  ++F+  LWK  
Sbjct: 238 RLELRAVVLDL-VTGARDRLSWKFSQDGQFSVRSAYEMLTVDEVPRPNMASFFNCLWKVR 297

BLAST of Lag0029489 vs. ExPASy TrEMBL
Match: A0A438D0T1 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_370 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 5.6e-35
Identity = 101/324 (31.17%), Postives = 145/324 (44.75%), Query Frame = 0

Query: 1   MGGRRT-EESCCFREEEVEKNAEFLPIKVAKILEKLIRDFFWEGSRGNGGMHNINWETTQ 60
           +GGR T  +SC         +   +P+ +A  +EK+ RDF W G+      H I WE   
Sbjct: 224 LGGRITLIQSCLSHIPSYFLSLFKIPVSIASKIEKMQRDFLWSGAGEGKRDHLIRWEVVS 283

Query: 61  LPILLGGLNIGHFRIRNMALMAKWIWRFLHERDSLWYNIIVEAY---------------- 120
            P  +GGL  G   +RN AL+ KW+WRFL ER  LW+ +I   Y                
Sbjct: 284 RPREMGGLGFGKTSMRNSALLGKWLWRFLRERSDLWHKVIASIYGTHPNGWDANMVVRWS 343

Query: 121 --------------PRLFRLTTRSTAMVDQVWNSSNAAWDLGLRRNLNDLEVIEWTSLSH 180
                           L  ++ ++  + + + NS   +W+   RRNL D E+     L  
Sbjct: 344 HRCPWKAIAQVFKSSPLLVISVKNLTVSNVLGNSLPLSWNFNFRRNLTDSEIDLLQRLMS 403

Query: 181 ILLSVTIR-SVNDSWCRPLDHSKSFSVKSLMSDMLTDCDS---TPSNFYLELWKDVYPKK 240
            L SV +  S +DS    L  S SFSVKS    +  D +     P+ F   LW    P K
Sbjct: 404 SLHSVLLSPSSSDSRAWSLSSSGSFSVKSFFYALSKDSNPLMFLPAKF---LWSSKVPSK 463

Query: 241 IKIFLWELSHGGINTADRLQRRMPHLTLSPSCCVMCYSAPENPCHLFVHCLYASKYWLIM 290
           +K   W ++HG +NT D+LQ R P+  L P  C++C    E+  HLF+HC      W  +
Sbjct: 464 VKALAWLVAHGKVNTNDKLQLRRPYKALCPQWCILCKGNGESINHLFLHCPVTIGLWHRL 523

BLAST of Lag0029489 vs. ExPASy TrEMBL
Match: A0A5E4FED8 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2B035166 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.6e-34
Identity = 104/363 (28.65%), Postives = 153/363 (42.15%), Query Frame = 0

Query: 24  LPIKVAKILEKLIRDFFWEGSRGNGGMHNINWETTQLPILLGGLNIGHFRIRNMALMAKW 83
           +PI VA  +EKL+RDF WEG  G    H ++WE        GGL +G  R R++AL AKW
Sbjct: 626 IPIGVANRIEKLMRDFLWEGLDGKSN-HAVSWEVVGKAKFCGGLGVGSLRARSVALRAKW 685

Query: 84  IWRFLHERDSLWYNII-------------------------------------------- 143
           +WRF +E  +LW+ +I                                            
Sbjct: 686 LWRFPNEPHALWHKVIRSIYGMDTNGWDAKPATRGSCRCPWRDISSGYNLFLQGCVFVVG 745

Query: 144 ------------------VEAYPRLFRLTTRSTAMVDQVWNSSN--AAWDLGLRRNLNDL 203
                              E +PRLF L+ +    +    +S     +WD G RRNLN+L
Sbjct: 746 SGVRVRFWEDDWGRGGVLKEVFPRLFNLSRKQNHNISSFASSDGLLLSWDFGFRRNLNEL 805

Query: 204 EVIEWTSLSHILLSVTI-RSVNDSWCRPLDHSKSFSVKSLMSDMLTDCDSTPSNFYLELW 263
           E+ E   L  +L  V +  S  D      D S  F+  SL S +    +      Y ++W
Sbjct: 806 EITEVARLLDLLEGVRLFTSRLDKRIWKFDPSGLFTCHSLCSHIQNCGEGETFPPYTQIW 865

Query: 264 KDVYPKKIKIFLWELSHGGINTADRLQRRMPHLTLSPSCCVMCYSAPENPCHLFVHCLYA 311
           K   P K+KIF+W+   G +NT D LQRR P+L +SP  C +C  A ++  HL +HC ++
Sbjct: 866 KAKTPLKVKIFVWQAVLGKLNTGDTLQRRCPYLCMSPHWCALCNMAGDSVNHLLLHCPFS 925

BLAST of Lag0029489 vs. ExPASy TrEMBL
Match: A0A2N9EGZ3 (Molybdenum cofactor biosynthesis protein C OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS1924 PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.6e-34
Identity = 99/307 (32.25%), Postives = 148/307 (48.21%), Query Frame = 0

Query: 24  LPIKVAKILEKLIRDFFWEGSRGNGGMHNINWETTQLPILLGGLNIGHFRIRNMALMAKW 83
           LP +VA  L+KL RDF W G       H +NW     PI  GGL + + R  N +L+ KW
Sbjct: 437 LPFEVANRLKKLQRDFLWNGMGDQPKFHLVNWAKVCEPIQNGGLGVKYLRFFNQSLLGKW 496

Query: 84  IWRFLHERDSLWYNIIVEAYPRLFRLTTRSTAMVDQVWN--SSNAAWDLGLRRNLNDLEV 143
           +WR+  +R++LW  ++  A+P LF +     A V  + +  + N  W++   RNL D E+
Sbjct: 497 LWRYGMDREALWRKVVEGAFPDLFSIAADREATVADLLSIRNGNLYWEVTFVRNLQDWEI 556

Query: 144 IEWTSLSHILLSVTIR-SVNDSWCRPLDHSKSFSVKSLMSDMLTDCDSTPSNFYLELWKD 203
           +  TS   +L SV +  S  D  C     SKSFSV S    +  +  +     + E+WK 
Sbjct: 557 VALTSCLDLLYSVALHDSGLDQLCWKRHSSKSFSVSSYYRCL--NAHTIKQFPWKEVWKT 616

Query: 204 VYPKKIKIFLWELSHGGINTADRLQRRMPHLTLSPSCCVMCYSAPENPCHLFVHCLYASK 263
             P ++  F+W    G I T D L++R   + L   CC MC +A E+  HLF+HC  A +
Sbjct: 617 KAPPRVAFFVWTAVLGKILTNDNLRKR--RVVLVDWCC-MCKAAGESSDHLFLHCSMAKQ 676

Query: 264 YWLIMKNAFGWSLILPNNIYGILDY--VFTGHPFHDQ--------KAWDLNLQRNLNEFE 318
            W  +   FG   ++P  +  ++       GH  H +          W L  +RNL  FE
Sbjct: 677 LWDTILLLFGAPWVMPRTVQDLITCWPGALGHRRHAEIWRVFPHCLMWCLWRERNLRTFE 736

BLAST of Lag0029489 vs. ExPASy TrEMBL
Match: M5XUF8 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa015473mg PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 3.6e-34
Identity = 103/350 (29.43%), Postives = 152/350 (43.43%), Query Frame = 0

Query: 24   LPIKVAKILEKLIRDFFWEGSRGNGGMHNINWETTQLPILLGGLNIGHFRIRNMALMAKW 83
            +PI VA  +EKL+RDF WEG       H ++WE        GGL +G  R R+ AL AKW
Sbjct: 1067 IPIGVANRIEKLMRDFLWEGLDRKRN-HAVSWEVVGKAKFCGGLGVGSLRARSAALRAKW 1126

Query: 84   IWRFLHERDSLWYNII-------------------------------------------- 143
            +WRF +E  +LW+ +I                                            
Sbjct: 1127 LWRFPNEPHALWHKVIRSIYGLDTNGPWRDISSGYNLFLQGCVFVVGCGVRVRFWEDDWN 1186

Query: 144  -----VEAYPRLFRLTTRSTAMVDQVWNSS--NAAWDLGLRRNLNDLEVIEWTSLSHILL 203
                  E +PRLF L+ +    +     S   + +WD G RR+LN+LE+ E   L  +L 
Sbjct: 1187 RGGVLKEVFPRLFNLSRKQNHNISSFTGSDGFSLSWDFGFRRDLNELEITEAARLLDLLE 1246

Query: 204  SV-TIRSVNDSWCRPLDHSKSFSVKSLMSDMLTDCDSTPSNFYLELWKDVYPKKIKIFLW 263
             V  I S  D     LD S  F+  S  + +    +    + Y ++WK   P K+KIF+W
Sbjct: 1247 GVRLITSRLDRRRWKLDPSGLFTCHSFCAHIQNCGEGEIFSPYTQIWKAKTPPKVKIFVW 1306

Query: 264  ELSHGGINTADRLQRRMPHLTLSPSCCVMCYSAPENPCHLFVHCLYASKYWLIMKNAFGW 311
            +   G +NT D LQRR P+L +SP  C +C  A E+  HL +HC ++ K W  +      
Sbjct: 1307 QAVLGKLNTGDTLQRRCPYLCISPHWCALCNKAGESVDHLLLHCPFSLKLWEPLLKEVNT 1366

BLAST of Lag0029489 vs. ExPASy TrEMBL
Match: A0A5E4GJ11 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2B035891 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 4.7e-34
Identity = 104/363 (28.65%), Postives = 152/363 (41.87%), Query Frame = 0

Query: 24  LPIKVAKILEKLIRDFFWEGSRGNGGMHNINWETTQLPILLGGLNIGHFRIRNMALMAKW 83
           +PI VA  +EKL+RDF WEG  G    H ++WE        GGL +G  R R+  L AKW
Sbjct: 626 IPIGVANRIEKLMRDFLWEGLDGKRN-HAVSWEVVGKAKFCGGLGVGSLRARSAVLRAKW 685

Query: 84  IWRFLHERDSLWYNII-------------------------------------------- 143
           +WRF +E  +LW+ +I                                            
Sbjct: 686 LWRFPNEPHALWHKVIRSIYGMDTNGWDAKPATRGSCRSPWRDISSGYNLFLRGCVFVVG 745

Query: 144 ------------------VEAYPRLFRLTTRSTAMVDQVWNSSN--AAWDLGLRRNLNDL 203
                              E +PRLF L+ +    +    +S     +WD G RRNLN+L
Sbjct: 746 CGVRVRFWEDDWSQGGVLKEVFPRLFNLSRKQNHNISSFTSSDGLPLSWDFGFRRNLNEL 805

Query: 204 EVIEWTSLSHILLSVTI-RSVNDSWCRPLDHSKSFSVKSLMSDMLTDCDSTPSNFYLELW 263
           E+ E   L  +L  V +  S  D     LD S  F+  SL S +    +      Y ++W
Sbjct: 806 EITEVARLLDLLEGVRLFTSRLDKRIWKLDPSGLFTCHSLCSHIQNCGEGEIFPPYTQIW 865

Query: 264 KDVYPKKIKIFLWELSHGGINTADRLQRRMPHLTLSPSCCVMCYSAPENPCHLFVHCLYA 311
           K   P K+KIF+W+   G +NT D LQRR P+L +SP  C +C  A ++  HL +HC ++
Sbjct: 866 KAKTPLKVKIFVWQAVLGKLNTGDTLQRRCPYLCISPHWCALCNKAGDSVDHLLLHCPFS 925

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RVW29080.11.2e-3431.17putative ribonuclease H protein [Vitis vinifera][more]
VVA25489.13.4e-3428.65Hypothetical predicted protein, partial [Prunus dulcis][more]
VVA39726.19.8e-3428.65Hypothetical predicted protein, partial [Prunus dulcis][more]
BBN69746.11.7e-3328.37VIRB2-interacting protein 2 [Prunus dulcis][more]
BBN67784.11.7e-3328.37VIRB2-interacting protein 2 [Prunus dulcis][more]
Match NameE-valueIdentityDescription
P0C2F63.3e-0820.53Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1... [more]
Match NameE-valueIdentityDescription
A0A438D0T15.6e-3531.17Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_370 P... [more]
A0A5E4FED81.6e-3428.65Reverse transcriptase domain-containing protein (Fragment) OS=Prunus dulcis OX=3... [more]
A0A2N9EGZ31.6e-3432.25Molybdenum cofactor biosynthesis protein C OS=Fagus sylvatica OX=28930 GN=FSB_LO... [more]
M5XUF83.6e-3429.43Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=... [more]
A0A5E4GJ114.7e-3428.65Reverse transcriptase domain-containing protein (Fragment) OS=Prunus dulcis OX=3... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 173..262
e-value: 1.5E-13
score: 51.3
NoneNo IPR availablePANTHERPTHR33116:SF38OS01G0158850 PROTEINcoord: 163..279
NoneNo IPR availablePANTHERPTHR33116:SF38OS01G0158850 PROTEINcoord: 28..130
NoneNo IPR availablePANTHERPTHR33116REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATEDcoord: 163..279
coord: 28..130

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0029489.1Lag0029489.1mRNA