Lag0029310 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0029310
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRicin B-type lectin domain-containing protein
Locationchr8: 37528269 .. 37528841 (+)
RNA-Seq ExpressionLag0029310
SyntenyLag0029310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGAGCGAGAAGGTTTCCCCTGGTCCTAGAGATTTCGACATTATTAACGATTACATTGGAATGGAGAGTTATGTCGATTCGAAGGACGAACAGACGGCGGGCGACATGTCTCCGCCGACGAGTTTCACCGATGGAAATAGTAAGAGGGATTACAGAATGTGGGGAAAAGATCAGAGAGAGTATCCTCCGCCGATTCCTTTGCTGGTTCGGACCGAGAATCTGGCTTCCCACATGCCATGGGTGTTGAAACGGCACTACACCGGCGACGGGCGGCTGATTCTGAGGGAGGAGAAAGTGAGGCGCCATGAGTTCTTCCGTGCCCACAGATCCGATGGGCGGCTGATGCTGCAGCTGGTGGCCGTGGACGACCAGGTCTCCGATGAGTCGAATGTGGAAATGGGGGAGGAGGAGAGTCCGGCGGCGGAGGGCGATGAGAGTGAGGGCGGCAGAATGGTCGGCGTCGGCAGGGGGGAGTTTTATACGTATGGGAATGTGAGGGGCAGAGATCCAGCGTTTATGTTCGGAGTTGCAGTGCCTGCAGCAGGGAGCCTGAGGACCGTTCGAAGCTAA

mRNA sequence

ATGCAGAGCGAGAAGGTTTCCCCTGGTCCTAGAGATTTCGACATTATTAACGATTACATTGGAATGGAGAGTTATGTCGATTCGAAGGACGAACAGACGGCGGGCGACATGTCTCCGCCGACGAGTTTCACCGATGGAAATAGTAAGAGGGATTACAGAATGTGGGGAAAAGATCAGAGAGAGTATCCTCCGCCGATTCCTTTGCTGGTTCGGACCGAGAATCTGGCTTCCCACATGCCATGGGTGTTGAAACGGCACTACACCGGCGACGGGCGGCTGATTCTGAGGGAGGAGAAAGTGAGGCGCCATGAGTTCTTCCGTGCCCACAGATCCGATGGGCGGCTGATGCTGCAGCTGGTGGCCGTGGACGACCAGGTCTCCGATGAGTCGAATGTGGAAATGGGGGAGGAGGAGAGTCCGGCGGCGGAGGGCGATGAGAGTGAGGGCGGCAGAATGGTCGGCGTCGGCAGGGGGGAGTTTTATACGTATGGGAATGTGAGGGGCAGAGATCCAGCGTTTATGTTCGGAGTTGCAGTGCCTGCAGCAGGGAGCCTGAGGACCGTTCGAAGCTAA

Coding sequence (CDS)

ATGCAGAGCGAGAAGGTTTCCCCTGGTCCTAGAGATTTCGACATTATTAACGATTACATTGGAATGGAGAGTTATGTCGATTCGAAGGACGAACAGACGGCGGGCGACATGTCTCCGCCGACGAGTTTCACCGATGGAAATAGTAAGAGGGATTACAGAATGTGGGGAAAAGATCAGAGAGAGTATCCTCCGCCGATTCCTTTGCTGGTTCGGACCGAGAATCTGGCTTCCCACATGCCATGGGTGTTGAAACGGCACTACACCGGCGACGGGCGGCTGATTCTGAGGGAGGAGAAAGTGAGGCGCCATGAGTTCTTCCGTGCCCACAGATCCGATGGGCGGCTGATGCTGCAGCTGGTGGCCGTGGACGACCAGGTCTCCGATGAGTCGAATGTGGAAATGGGGGAGGAGGAGAGTCCGGCGGCGGAGGGCGATGAGAGTGAGGGCGGCAGAATGGTCGGCGTCGGCAGGGGGGAGTTTTATACGTATGGGAATGTGAGGGGCAGAGATCCAGCGTTTATGTTCGGAGTTGCAGTGCCTGCAGCAGGGAGCCTGAGGACCGTTCGAAGCTAA

Protein sequence

MQSEKVSPGPRDFDIINDYIGMESYVDSKDEQTAGDMSPPTSFTDGNSKRDYRMWGKDQREYPPPIPLLVRTENLASHMPWVLKRHYTGDGRLILREEKVRRHEFFRAHRSDGRLMLQLVAVDDQVSDESNVEMGEEESPAAEGDESEGGRMVGVGRGEFYTYGNVRGRDPAFMFGVAVPAAGSLRTVRS
Homology
BLAST of Lag0029310 vs. NCBI nr
Match: XP_022141391.1 (uncharacterized protein LOC111011804, partial [Momordica charantia])

HSP 1 Score: 201.4 bits (511), Expect = 6.8e-48
Identity = 115/194 (59.28%), Postives = 133/194 (68.56%), Query Frame = 0

Query: 2   QSEKVSPGPRDFDIINDYIGMESYVDSKDEQTAGDMSPPTSFTDGNSKRDYRMW---GKD 61
           QS++V P       I+DYIGMES VD K+ QTA D  PP      + KR+ +MW   G+ 
Sbjct: 33  QSQRVFPSSTRESDIDDYIGMESCVDLKENQTAADTMPPPPPMKFSDKRENKMWGGTGRK 92

Query: 62  QREYPPPIPLLVRTENLASHMPWVLKRHYTGDGRLILREEKVRRHEFFRAHRSDGRLMLQ 121
           +REYPPPIPLLVRTENLASHMPWVLKRHYTGDGRLIL EEKVR HE+FRAHRSDGRLMLQ
Sbjct: 93  EREYPPPIPLLVRTENLASHMPWVLKRHYTGDGRLILTEEKVRHHEYFRAHRSDGRLMLQ 152

Query: 122 LVAVDDQVSDESNVEMGEEESPAAEGDESEGGRMVGVGRGEFYTYGNVRGRDPAFMFGVA 181
           LVA+DD   +    +  E+E      D  +GG+M  +  G        R RDPA MFGVA
Sbjct: 153 LVALDDGDGESGQDQEDEDE------DFEKGGKMKCLKNGIVR-----RRRDPALMFGVA 212

Query: 182 VPA--AGSLRTVRS 191
           VPA  AG+LRTVRS
Sbjct: 213 VPALSAGTLRTVRS 215

BLAST of Lag0029310 vs. NCBI nr
Match: XP_023551237.1 (uncharacterized protein LOC111809117 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 199.1 bits (505), Expect = 3.4e-47
Identity = 119/193 (61.66%), Postives = 136/193 (70.47%), Query Frame = 0

Query: 2   QSEKVSP-GPRDFDIINDYIGMESYVDSKDEQTAGDMSPPTSFTD-GNSKRDYR---MWG 61
           +S KVS   P D +  +DYIG+ES VD KD  TA D +P  SF + GNSKRD +   M  
Sbjct: 10  RSNKVSSLVPSDIN-SDDYIGVESCVDLKDHDTAVDTTPLASFPEGGNSKRDIKTSWMGR 69

Query: 62  KDQREYPPPIPLLVRTENLASHMPWVLKRHYTGDGRLILREEKVRRHEFFRAHRSDGRLM 121
           KDQ+ YPPPIPLLVRTENLASH+PWV+KR YTGDGRLIL EEKV+ HEFFRAHRSDGRLM
Sbjct: 70  KDQKNYPPPIPLLVRTENLASHIPWVMKRQYTGDGRLILTEEKVKHHEFFRAHRSDGRLM 129

Query: 122 LQLVAVDDQVSDESNVEMGEEESPAAEGDESEGGRMVGVGRGEFYTYGNVRGRDPAFMFG 181
           LQLV +DDQ  DE + E  EEES  A G E           G++  Y NVR RD AFMFG
Sbjct: 130 LQLVTMDDQDLDEEDDEEVEEESTEAGGSEG----------GKWCKYENVRDRDAAFMFG 189

Query: 182 VAVPAAGSLRTVR 190
           V V +AGSLR+VR
Sbjct: 190 VEV-SAGSLRSVR 190

BLAST of Lag0029310 vs. NCBI nr
Match: XP_022939970.1 (uncharacterized protein LOC111445672 [Cucurbita moschata])

HSP 1 Score: 195.3 bits (495), Expect = 4.8e-46
Identity = 115/193 (59.59%), Postives = 133/193 (68.91%), Query Frame = 0

Query: 2   QSEKVSP-GPRDFDIINDYIGMESYVDSKDEQTAGDMSPPTSFTD-GNSKRDYR---MWG 61
           +S KVS   P D +  +DYIG+ES VD KD  TA D++P  SF + GNSKRD +   M  
Sbjct: 10  RSNKVSSLVPSDIN-SDDYIGVESCVDLKDNDTAADITPLASFPEGGNSKRDIKTSWMGR 69

Query: 62  KDQREYPPPIPLLVRTENLASHMPWVLKRHYTGDGRLILREEKVRRHEFFRAHRSDGRLM 121
           KDQ+ YPPPIPLLVRTENL SH+PWV+KR YTGDGRLIL EEKV+ HEFFRAHRSDGRLM
Sbjct: 70  KDQKNYPPPIPLLVRTENLGSHIPWVMKRQYTGDGRLILTEEKVKHHEFFRAHRSDGRLM 129

Query: 122 LQLVAVDDQVSDESNVEMGEEESPAAEGDESEGGRMVGVGRGEFYTYGNVRGRDPAFMFG 181
           LQLV +DDQ  DE   E  ++E     G   EGG+        +  Y NVR RD AFMFG
Sbjct: 130 LQLVTMDDQELDEDGDEEEKKEECTEAGGSEEGGK--------WCKYENVRDRDAAFMFG 189

Query: 182 VAVPAAGSLRTVR 190
           V V  AGSLR+VR
Sbjct: 190 VEV-GAGSLRSVR 192

BLAST of Lag0029310 vs. NCBI nr
Match: KAG7016540.1 (hypothetical protein SDJN02_21649 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 195.3 bits (495), Expect = 4.8e-46
Identity = 110/177 (62.15%), Postives = 125/177 (70.62%), Query Frame = 0

Query: 17  NDYIGMESYVDSKDEQTAGDMSPPTSFTD-GNSKRDYR---MWGKDQREYPPPIPLLVRT 76
           +DYIG+ES VD KD  TA D+SP  SF + GNSKRD +   M  KDQ+ YPPPIPLLVRT
Sbjct: 36  DDYIGVESCVDLKDNDTAADISPLASFPEGGNSKRDIKTSWMERKDQKNYPPPIPLLVRT 95

Query: 77  ENLASHMPWVLKRHYTGDGRLILREEKVRRHEFFRAHRSDGRLMLQLVAVDDQVSDESNV 136
           ENL SH+PWV+KR YTGDGRLIL EEKV+ HEFFRAHRSDGRLMLQLV +DDQ  DE   
Sbjct: 96  ENLGSHIPWVMKRQYTGDGRLILTEEKVKHHEFFRAHRSDGRLMLQLVTMDDQELDEDGD 155

Query: 137 EMGEEESPAAEGDESEGGRMVGVGRGEFYTYGNVRGRDPAFMFGVAVPAAGSLRTVR 190
           E  ++E     G   EGG+        +  Y NVR RD AFMFGV V  AGSLR+VR
Sbjct: 156 EEEKKEECTEAGGSEEGGK--------WCKYENVRDRDAAFMFGVEV-TAGSLRSVR 203

BLAST of Lag0029310 vs. NCBI nr
Match: KAG6579017.1 (hypothetical protein SDJN03_23465, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 194.9 bits (494), Expect = 6.3e-46
Identity = 115/193 (59.59%), Postives = 133/193 (68.91%), Query Frame = 0

Query: 2   QSEKVSP-GPRDFDIINDYIGMESYVDSKDEQTAGDMSPPTSFTD-GNSKRDYR---MWG 61
           +S KVS   P D +  +DYIG+ES VD KD  TA D++P  SF + GNSKRD +   M  
Sbjct: 10  RSNKVSSLVPSDIN-SDDYIGVESCVDLKDNDTAADITPLASFPEGGNSKRDIKTSWMER 69

Query: 62  KDQREYPPPIPLLVRTENLASHMPWVLKRHYTGDGRLILREEKVRRHEFFRAHRSDGRLM 121
           KDQ+ YPPPIPLLVRTENL SH+PWV+KR YTGDGRLIL EEKV+ HEFFRAHRSDGRLM
Sbjct: 70  KDQKNYPPPIPLLVRTENLGSHIPWVMKRQYTGDGRLILTEEKVKHHEFFRAHRSDGRLM 129

Query: 122 LQLVAVDDQVSDESNVEMGEEESPAAEGDESEGGRMVGVGRGEFYTYGNVRGRDPAFMFG 181
           LQLV +DDQ  DE   E  ++E     G   EGG+        +  Y NVR RD AFMFG
Sbjct: 130 LQLVTMDDQELDEDGDEEEKKEKCTEAGGSEEGGK--------WCKYENVRDRDAAFMFG 189

Query: 182 VAVPAAGSLRTVR 190
           V V  AGSLR+VR
Sbjct: 190 VEV-GAGSLRSVR 192

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022141391.16.8e-4859.28uncharacterized protein LOC111011804, partial [Momordica charantia][more]
XP_023551237.13.4e-4761.66uncharacterized protein LOC111809117 [Cucurbita pepo subsp. pepo][more]
XP_022939970.14.8e-4659.59uncharacterized protein LOC111445672 [Cucurbita moschata][more]
KAG7016540.14.8e-4662.15hypothetical protein SDJN02_21649 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6579017.16.3e-4659.59hypothetical protein SDJN03_23465, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021410The fantastic four familyPFAMPF11250FAFcoord: 61..119
e-value: 1.8E-20
score: 72.9
IPR021410The fantastic four familyPANTHERPTHR33155FANTASTIC FOUR-LIKE PROTEIN (DUF3049)coord: 5..134
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 129..143
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..48
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..48
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 126..151
NoneNo IPR availablePANTHERPTHR33155:SF36SUBFAMILY NOT NAMEDcoord: 5..134

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0029310.1Lag0029310.1mRNA