Lag0028843 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTTTTGTAGAGCCAAAAAGTTTCGATGGAGTCATGAAGTTCGATGGGAAAAATTTTGGATATTGGAAGATGCAAGTCAAGGATTATTTAACTTGCAAGAAAGTGCATAAGACATTGAAGGAGAGACCGAAAGATATGAAGGACGAAGATTGGGAAGCTCTAGATGAAGAGGCAGTTGCAACCATTAGGATGTGTTTGTCGATGGATGTGGCAAGTCTTGTAGCCCATGAGACAACTGCAGTCAAGTTGATGGAATCGCTTACAAACAGGTATGAAAAACCCTCTGCAAATAATAAGGTCTACCTAGTTAAGAAGTTTTTCAACATGCAAATGTCTGAGGATGCTTATGTGAATTCCTATATTAATGAGGTTACCACTTTGATTAATCAATTAAAATCTGTTAAGATAGAATTTTCTGATGAGGTGAATGCTATTCAGTTGTTAACGTCTTTACCTGATAGTTGGGAAACGATGAAGACAGCAGTGTCTAATTCGACTGGAAATAACACTTAAAAATTTTCAGAAGTTTGTGATTTAGCCATAACTGAGGAAATTCGTAGGCAGGGTAGTAATAAAGAGTCTACTGTAGGGTCAGCTTTGGTTATGACTAAAGGTAAAGATAAGGTTGATGAAGATAATGAACCGAGTAGCAGTAAGAAAAAGTGGAAAGGTAGGAATGAGGTAGAATGTTATTACTGCCATAAGAAAGGTCACTTCAAGTATCAGGGTAGGAAATTTAAAGAGGATCAGAAAAGAAAACCAAAGGCAAATATAGTGGATGAGGTTGTCTTAGCTTGTGTTGAGAGTGACACAAAGTATAGTAACCACTCATCAGATTGGATATTAGACAGTGCAACTTCTGTTCACATAGCTTCAGATAGGAGTTTGTTCACATCATTCACAGGAGGGCATCGTGGCCTTGTGAGGATGGGGAATGGTAGAACCTCCAAGACTAGAGGGATTGGAGATGTTAGTCTGAAGACAGAATGTGGAGATAAATTGGTACTGCGAGATGTCAGGTACGTGCCTAATATCAAGATGAATATTATTTCTATTGGTACATTGACAGATGATGGTTACATGTGTGAGTTTGGTAGTCGCCAGTGTAAACTCAAGTTCGGATCCCAGGTAGTGGCAGTTGGTCACAGGAAATCTACACTGTACAGATGTCAGTTGAATGTTGCCAAAGGTTCAGAGAGACATTGGATGCCAGTTAAAGCTGCAGATGGTAATGGTAGAGGTACAGTTGAGCCAGCAGCAAGGATAACCAATTTCGATCAGTCCGATCAAGATCCTTCAGTTCAGAAACAATTGGGAAGTCTAGAAGAGAAAGTTGATGGCTATCGTGAATCCCCAGTTGTCAGACGGTCGAATGAATTGAAGAAGTCGCTTAGGCGAGTCGAGGCATCAAAGTGGAAGGCCAGGGCAGTTGCTAAGGTCAAAGGTCAGGTCTCTAGCTTGGTAACAAGTTTGAATAGAGGATTCAAGCAATTCTCAGATTGTATCTTCTTCAGGAACAGTTGTTCGGGTTGGAAGAAGATGACAGGTGATACCACTTAGCTGAAGTGGGAATACGTGTCTGTCTTTTTCGTCTGGGAGACAGGTCCACGTAGCTAGTCCATACCTCGGGGTGAGCACAGATGAGCTACAATTATACTCTGATAGTTGCCTGTTTTCGTGAGTTTGTTGTTTTTCAGGTATTTTGAGCCTTGGAGTTTACCAAGAAGATCAGAGATAACAGTTGTAATGGGAGTAGATCCTTGGAGTTTGCCAAGATGTTTAGAGTTTTGTTGCAGTGGGAGACGAGATCTTTGTTTTGTCTCCAAGTGGGAAATTGTTGGAGTGTGGAGTCAAAACTCCTTCAGCCTCAATTTGTCGTGCATGGAAAGAAAAGAAGGGAATGGGCCCAAGGCCCATTTGTCAGACGGTCGAATGAATTGAAGAAGTCGCTTAGGCGAGTTGAGGCATCAAAGTGGAAGGCCAGGGCAGTTGCTAAGGTCAAAGGTCAGGTCTCTAGCTTGGTAACAAGTTTGAATAGAGGATTCAAGCAATTCTCAGATTGTATCTTCTTCAGGAACAGTTGTTCGGGTTGGAAGAAGATGACAGGTGATACCACTTAGCTGAAGTGGGAATACGTGTCTGTCTTTTTCGTCTGGGAGACAGGTCCACGTAGCTAGTCCATACCTCGGGGCGAGCACAGATGAGCTACAGTTATACTCTGATAGTTGCCTGTTTTCGTGAGTTTGTTGTTTTTCAGGTATTTTGAGCCTTGGAGTTTACCAAGAAGATCAGAGATAA ATGGGTTTTGTAGAGCCAAAAAGTTTCGATGGAGTCATGAAGTTCGATGGGAAAAATTTTGGATATTGGAAGATGCAAGTCAAGGATTATTTAACTTGCAAGAAAGTGCATAAGACATTGAAGGAGAGACCGAAAGATATGAAGGACGAAGATTGGGAAGCTCTAGATGAAGAGGCAGTTGCAACCATTAGGATGTGTTTGTCGATGGATGTGGCAAGTCTTGTAGCCCATGAGACAACTGCAGTCAAGTTGATGGAATCGCTTACAAACAGGTATGAAAAACCCTCTGCAAATAATAAGGTCTACCTAGTTAAGAAGTTTTTCAACATGCAAATGTCTGAGGATGCTTATGTGAATTCCTATATTAATGAGGTTACCACTTTGATTAATCAATTAAAATCTGTTAAGATAGAATTTTCTGATGAGGTGAATGCTATTCAGTTGTTAACGTCTTTACCTGATAGTTGGGAAACGATGAAGACAGCAGTGCAGGGTAGTAATAAAGAGTCTACTGTAGGGTCAGCTTTGGTTATGACTAAAGGTAAAGATAAGGTTGATGAAGATAATGAACCGAGTAGCAGTAAGAAAAAGTGGAAAGGTAGGAATGAGGTAGAATGTTATTACTGCCATAAGAAAGGTCACTTCAAGTATCAGGGTAGGAAATTTAAAGAGGATCAGAAAAGAAAACCAAAGGCAAATATAGTGGATGAGGTTGTCTTAGCTTGTGTTGAGAGTGACACAAAGTATAGTAACCACTCATCAGATTGGATATTAGACAGTGCAACTTCTGTTCACATAGCTTCAGATAGGAGTTTGTTCACATCATTCACAGGAGGGCATCGTGGCCTTGTGAGGATGGGGAATGGTAGAACCTCCAAGACTAGAGGGATTGGAGATGTTAGTCTGAAGACAGAATGTGGAGATAAATTGGTACTGCGAGATGTCAGGTACGTGCCTAATATCAAGATGAATATTATTTCTATTGGTACATTGACAGATGATGGTTACATGTGTGAGTTTGGTAGTCGCCAGTGTAAACTCAAGTTCGGATCCCAGGTAGTGGCAGTTGGTCACAGGAAATCTACACTGTACAGATGTCAGTTGAATGTTGCCAAAGGTTCAGAGAGACATTGGATGCCAGTTAAAGCTGCAGATGGTAATGGTAGAGGTACAGTTGAGCCAGCAGCAAGGATAACCAATTTCGATCAGTCCGATCAAGATCCTTCAGTTCAGAAACAATTGGGAAGTCTAGAAGAGAAAGTTGATGGCTATCGTGAATCCCCAGTTGTCAGACGGTCGAATGAATTGAAGAAGTCGCTTAGGCGAGTCGAGGCATCAAAGTGGAAGGCCAGGGCAGTTGCTAAGGTCAAAGGTCAGGTCTCTAGCTTGGTAACAAGTTTGAATAGAGGATTCAAGCAATTCTCAGATTGTATCTTCTTCAGGAACAGTTGTTCGGGTTGGAAGAAGATGACAGCCTTGGAGTTTACCAAGAAGATCAGAGATAACAGTTGTAATGGGAGTAGATCCTTGGAGTTTGCCAAGATGTTTAGAGTTTTGTTGCAGTGGGAGACGAGATCTTTGTTTTGTCTCCAAGTGGGAAATTGTTGGAGTGTGGAGTCAAAACTCCTTCAGCCTCAATTTGTCGTGCATGGAAAGAAAAGAAGGGAATGGGCCCAAGGCCCATTTGTCAGACGGTCGAATGAATTGAAGAAGTCGCTTAGGCGAGTTGAGGCATCAAAGTGGAAGGCCAGGGCAGTTGCTAAGGTCAAAGGTCAGGTCTCTAGCTTGGTAACAAGTTTGAATAGAGGATTCAAGCAATTCTCAGATTGTATCTTCTTCAGGAACAGTTGTTCGGGTTGGAAGAAGATGACAGGTATTTTGAGCCTTGGAGTTTACCAAGAAGATCAGAGATAA ATGGGTTTTGTAGAGCCAAAAAGTTTCGATGGAGTCATGAAGTTCGATGGGAAAAATTTTGGATATTGGAAGATGCAAGTCAAGGATTATTTAACTTGCAAGAAAGTGCATAAGACATTGAAGGAGAGACCGAAAGATATGAAGGACGAAGATTGGGAAGCTCTAGATGAAGAGGCAGTTGCAACCATTAGGATGTGTTTGTCGATGGATGTGGCAAGTCTTGTAGCCCATGAGACAACTGCAGTCAAGTTGATGGAATCGCTTACAAACAGGTATGAAAAACCCTCTGCAAATAATAAGGTCTACCTAGTTAAGAAGTTTTTCAACATGCAAATGTCTGAGGATGCTTATGTGAATTCCTATATTAATGAGGTTACCACTTTGATTAATCAATTAAAATCTGTTAAGATAGAATTTTCTGATGAGGTGAATGCTATTCAGTTGTTAACGTCTTTACCTGATAGTTGGGAAACGATGAAGACAGCAGTGCAGGGTAGTAATAAAGAGTCTACTGTAGGGTCAGCTTTGGTTATGACTAAAGGTAAAGATAAGGTTGATGAAGATAATGAACCGAGTAGCAGTAAGAAAAAGTGGAAAGGTAGGAATGAGGTAGAATGTTATTACTGCCATAAGAAAGGTCACTTCAAGTATCAGGGTAGGAAATTTAAAGAGGATCAGAAAAGAAAACCAAAGGCAAATATAGTGGATGAGGTTGTCTTAGCTTGTGTTGAGAGTGACACAAAGTATAGTAACCACTCATCAGATTGGATATTAGACAGTGCAACTTCTGTTCACATAGCTTCAGATAGGAGTTTGTTCACATCATTCACAGGAGGGCATCGTGGCCTTGTGAGGATGGGGAATGGTAGAACCTCCAAGACTAGAGGGATTGGAGATGTTAGTCTGAAGACAGAATGTGGAGATAAATTGGTACTGCGAGATGTCAGGTACGTGCCTAATATCAAGATGAATATTATTTCTATTGGTACATTGACAGATGATGGTTACATGTGTGAGTTTGGTAGTCGCCAGTGTAAACTCAAGTTCGGATCCCAGGTAGTGGCAGTTGGTCACAGGAAATCTACACTGTACAGATGTCAGTTGAATGTTGCCAAAGGTTCAGAGAGACATTGGATGCCAGTTAAAGCTGCAGATGGTAATGGTAGAGGTACAGTTGAGCCAGCAGCAAGGATAACCAATTTCGATCAGTCCGATCAAGATCCTTCAGTTCAGAAACAATTGGGAAGTCTAGAAGAGAAAGTTGATGGCTATCGTGAATCCCCAGTTGTCAGACGGTCGAATGAATTGAAGAAGTCGCTTAGGCGAGTCGAGGCATCAAAGTGGAAGGCCAGGGCAGTTGCTAAGGTCAAAGGTCAGGTCTCTAGCTTGGTAACAAGTTTGAATAGAGGATTCAAGCAATTCTCAGATTGTATCTTCTTCAGGAACAGTTGTTCGGGTTGGAAGAAGATGACAGCCTTGGAGTTTACCAAGAAGATCAGAGATAACAGTTGTAATGGGAGTAGATCCTTGGAGTTTGCCAAGATGTTTAGAGTTTTGTTGCAGTGGGAGACGAGATCTTTGTTTTGTCTCCAAGTGGGAAATTGTTGGAGTGTGGAGTCAAAACTCCTTCAGCCTCAATTTGTCGTGCATGGAAAGAAAAGAAGGGAATGGGCCCAAGGCCCATTTGTCAGACGGTCGAATGAATTGAAGAAGTCGCTTAGGCGAGTTGAGGCATCAAAGTGGAAGGCCAGGGCAGTTGCTAAGGTCAAAGGTCAGGTCTCTAGCTTGGTAACAAGTTTGAATAGAGGATTCAAGCAATTCTCAGATTGTATCTTCTTCAGGAACAGTTGTTCGGGTTGGAAGAAGATGACAGGTATTTTGAGCCTTGGAGTTTACCAAGAAGATCAGAGATAA MGFVEPKSFDGVMKFDGKNFGYWKMQVKDYLTCKKVHKTLKERPKDMKDEDWEALDEEAVATIRMCLSMDVASLVAHETTAVKLMESLTNRYEKPSANNKVYLVKKFFNMQMSEDAYVNSYINEVTTLINQLKSVKIEFSDEVNAIQLLTSLPDSWETMKTAVQGSNKESTVGSALVMTKGKDKVDEDNEPSSSKKKWKGRNEVECYYCHKKGHFKYQGRKFKEDQKRKPKANIVDEVVLACVESDTKYSNHSSDWILDSATSVHIASDRSLFTSFTGGHRGLVRMGNGRTSKTRGIGDVSLKTECGDKLVLRDVRYVPNIKMNIISIGTLTDDGYMCEFGSRQCKLKFGSQVVAVGHRKSTLYRCQLNVAKGSERHWMPVKAADGNGRGTVEPAARITNFDQSDQDPSVQKQLGSLEEKVDGYRESPVVRRSNELKKSLRRVEASKWKARAVAKVKGQVSSLVTSLNRGFKQFSDCIFFRNSCSGWKKMTALEFTKKIRDNSCNGSRSLEFAKMFRVLLQWETRSLFCLQVGNCWSVESKLLQPQFVVHGKKRREWAQGPFVRRSNELKKSLRRVEASKWKARAVAKVKGQVSSLVTSLNRGFKQFSDCIFFRNSCSGWKKMTGILSLGVYQEDQR Homology
BLAST of Lag0028843 vs. NCBI nr
Match: KAG7584790.1 (Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa]) HSP 1 Score: 244.2 bits (622), Expect = 3.0e-60 Identity = 154/412 (37.38%), Postives = 221/412 (53.64%), Query Frame = 0
BLAST of Lag0028843 vs. NCBI nr
Match: KAG7561662.1 (Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa]) HSP 1 Score: 242.7 bits (618), Expect = 8.9e-60 Identity = 152/412 (36.89%), Postives = 219/412 (53.16%), Query Frame = 0
BLAST of Lag0028843 vs. NCBI nr
Match: TKS02608.1 (hypothetical protein D5086_0000161380 [Populus alba]) HSP 1 Score: 241.9 bits (616), Expect = 1.5e-59 Identity = 155/408 (37.99%), Postives = 223/408 (54.66%), Query Frame = 0
BLAST of Lag0028843 vs. NCBI nr
Match: TKS09800.1 (hypothetical protein D5086_0000089010 [Populus alba]) HSP 1 Score: 240.7 bits (613), Expect = 3.4e-59 Identity = 150/387 (38.76%), Postives = 213/387 (55.04%), Query Frame = 0
BLAST of Lag0028843 vs. NCBI nr
Match: TKR89927.1 (hypothetical protein D5086_0000238200 [Populus alba]) HSP 1 Score: 238.4 bits (607), Expect = 1.7e-58 Identity = 148/387 (38.24%), Postives = 212/387 (54.78%), Query Frame = 0
BLAST of Lag0028843 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1) HSP 1 Score: 183.7 bits (465), Expect = 6.4e-45 Identity = 134/404 (33.17%), Postives = 200/404 (49.50%), Query Frame = 0
BLAST of Lag0028843 vs. ExPASy Swiss-Prot
Match: P25601 (Putative transposon Ty5-1 protein YCL075W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5B PE=5 SV=1) HSP 1 Score: 55.5 bits (132), Expect = 2.6e-06 Identity = 32/87 (36.78%), Postives = 49/87 (56.32%), Query Frame = 0
BLAST of Lag0028843 vs. ExPASy TrEMBL
Match: A0A2N9G318 (CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21677 PE=4 SV=1) HSP 1 Score: 244.6 bits (623), Expect = 1.1e-60 Identity = 155/408 (37.99%), Postives = 225/408 (55.15%), Query Frame = 0
BLAST of Lag0028843 vs. ExPASy TrEMBL
Match: A0A2N9FA13 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11593 PE=4 SV=1) HSP 1 Score: 242.7 bits (618), Expect = 4.3e-60 Identity = 154/408 (37.75%), Postives = 224/408 (54.90%), Query Frame = 0
BLAST of Lag0028843 vs. ExPASy TrEMBL
Match: A0A2N9GXF9 (CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS34888 PE=4 SV=1) HSP 1 Score: 242.7 bits (618), Expect = 4.3e-60 Identity = 162/447 (36.24%), Postives = 238/447 (53.24%), Query Frame = 0
BLAST of Lag0028843 vs. ExPASy TrEMBL
Match: A0A2N9IS39 (CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55006 PE=4 SV=1) HSP 1 Score: 242.3 bits (617), Expect = 5.6e-60 Identity = 154/408 (37.75%), Postives = 224/408 (54.90%), Query Frame = 0
BLAST of Lag0028843 vs. ExPASy TrEMBL
Match: A0A4U5PY83 (CCHC-type domain-containing protein OS=Populus alba OX=43335 GN=D5086_0000161380 PE=4 SV=1) HSP 1 Score: 241.9 bits (616), Expect = 7.3e-60 Identity = 155/408 (37.99%), Postives = 223/408 (54.66%), Query Frame = 0
BLAST of Lag0028843 vs. TAIR 10
Match: AT3G29785.1 (unknown protein; Has 90 Blast hits to 90 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 63.9 bits (154), Expect = 5.3e-10 Identity = 32/88 (36.36%), Postives = 56/88 (63.64%), Query Frame = 0
BLAST of Lag0028843 vs. TAIR 10
Match: AT3G21000.1 (Gag-Pol-related retrotransposon family protein ) HSP 1 Score: 46.2 bits (108), Expect = 1.1e-04 Identity = 56/287 (19.51%), Postives = 119/287 (41.46%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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