Lag0028262 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0028262
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRT_RNaseH_2 domain-containing protein
Locationchr8: 17044098 .. 17044694 (+)
RNA-Seq ExpressionLag0028262
SyntenyLag0028262
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGAACGAGAAGAACAGAAGAAAAAGAGGTCGAAGACAAGACAAGAGAAGAAGTAGAGAAAAAAGCAGAGGAAGAAATTTTCCCAGACAAAGGGAAGACAAGGGCAAAGGTATTGTTAAAGCATCACCGGAACCTGAAGATAGTGAAACAGAGGAGCCACGATTGCCATATAACCACTTCATCAACAATCTTGCTCGAGCAAAATATGTCGAGATGCTGAGAAGAGACTTTTTGTTTGACCGTGGGTTTGGCGATGATTTGCCACGACTCTTGTGGACTGGAATAGCGAACCATGGCTGGAGTCAATTTTGTGCAAAGCCGGATCCGGTCAATTCCAACATTGTTCGAGAGTTTTATGCAAATATTGATGATCAAGAGGGATTTCAGGCTATCGTCCGAGGAGTGCCCGTTGACTGGAGCCCAAGAGCTATCAATTCTTTATTCAACCTCCAGGACTTTCCACACGCATGCTTCAATGAGATGGTGGTGGCACCATCGAATGATCAGTTAAATGCGGCTGTCCGAGAGGTTGGCATCGATGGAGACTATCGAAGACGAAAAACGCACATTTCAAGCTACTTATCTGAAGAGTGA

mRNA sequence

ATGCAGAACGAGAAGAACAGAAGAAAAAGAGGTCGAAGACAAGACAAGAGAAGAAGTAGAGAAAAAAGCAGAGGAAGAAATTTTCCCAGACAAAGGGAAGACAAGGGCAAAGGTATTGTTAAAGCATCACCGGAACCTGAAGATAGTGAAACAGAGGAGCCACGATTGCCATATAACCACTTCATCAACAATCTTGCTCGAGCAAAATATGTCGAGATGCTGAGAAGAGACTTTTTGTTTGACCGTGGGTTTGGCGATGATTTGCCACGACTCTTGTGGACTGGAATAGCGAACCATGGCTGGAGTCAATTTTGTGCAAAGCCGGATCCGGTCAATTCCAACATTGTTCGAGAGTTTTATGCAAATATTGATGATCAAGAGGGATTTCAGGCTATCGTCCGAGGAGTGCCCGTTGACTGGAGCCCAAGAGCTATCAATTCTTTATTCAACCTCCAGGACTTTCCACACGCATGCTTCAATGAGATGGTGGTGGCACCATCGAATGATCAGTTAAATGCGGCTGTCCGAGAGGTTGGCATCGATGGAGACTATCGAAGACGAAAAACGCACATTTCAAGCTACTTATCTGAAGAGTGA

Coding sequence (CDS)

ATGCAGAACGAGAAGAACAGAAGAAAAAGAGGTCGAAGACAAGACAAGAGAAGAAGTAGAGAAAAAAGCAGAGGAAGAAATTTTCCCAGACAAAGGGAAGACAAGGGCAAAGGTATTGTTAAAGCATCACCGGAACCTGAAGATAGTGAAACAGAGGAGCCACGATTGCCATATAACCACTTCATCAACAATCTTGCTCGAGCAAAATATGTCGAGATGCTGAGAAGAGACTTTTTGTTTGACCGTGGGTTTGGCGATGATTTGCCACGACTCTTGTGGACTGGAATAGCGAACCATGGCTGGAGTCAATTTTGTGCAAAGCCGGATCCGGTCAATTCCAACATTGTTCGAGAGTTTTATGCAAATATTGATGATCAAGAGGGATTTCAGGCTATCGTCCGAGGAGTGCCCGTTGACTGGAGCCCAAGAGCTATCAATTCTTTATTCAACCTCCAGGACTTTCCACACGCATGCTTCAATGAGATGGTGGTGGCACCATCGAATGATCAGTTAAATGCGGCTGTCCGAGAGGTTGGCATCGATGGAGACTATCGAAGACGAAAAACGCACATTTCAAGCTACTTATCTGAAGAGTGA

Protein sequence

MQNEKNRRKRGRRQDKRRSREKSRGRNFPRQREDKGKGIVKASPEPEDSETEEPRLPYNHFINNLARAKYVEMLRRDFLFDRGFGDDLPRLLWTGIANHGWSQFCAKPDPVNSNIVREFYANIDDQEGFQAIVRGVPVDWSPRAINSLFNLQDFPHACFNEMVVAPSNDQLNAAVREVGIDGDYRRRKTHISSYLSEE
Homology
BLAST of Lag0028262 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 68.2 bits (165), Expect = 9.3e-08
Identity = 30/58 (51.72%), Postives = 35/58 (60.34%), Query Frame = 0

Query: 96  IANHGWSQFCAKPDPVNSNIVREFYANIDDQEGFQAIVRGVPVDWSPRAINSLFNLQD 154
           I  H W QFCA P+     +VREFYAN+ D E     VRGV V WS  AIN++F L D
Sbjct: 67  ITQHNWKQFCAHPEDPIVPLVREFYANLTDPEENTVYVRGVQVSWSEEAINAVFGLGD 124

BLAST of Lag0028262 vs. NCBI nr
Match: KAE8695166.1 (hypothetical protein F3Y22_tig00110733pilonHSYRG00282 [Hibiscus syriacus])

HSP 1 Score: 67.4 bits (163), Expect = 1.6e-07
Identity = 32/98 (32.65%), Postives = 50/98 (51.02%), Query Frame = 0

Query: 61  FINNLARAKYVEMLRRDFLFDRGF------GDDLPRLLWTGIANHGWSQFCAKPDPVNSN 120
           F++  A+  Y  +  R   F+ GF        +L   +   +  H W +F   P PVN+ 
Sbjct: 15  FVDEAAKEHYQTIKNRRVFFELGFVFSEAENANLGSEVLDVVTKHKWQKFAKHPVPVNAT 74

Query: 121 IVREFYANIDDQEGFQAIVRGVPVDWSPRAINSLFNLQ 153
           IV+EFY+NI +      +VRG+ + ++P AIN  F LQ
Sbjct: 75  IVKEFYSNITEPNQHAVMVRGISIRFTPTAINRYFKLQ 112

BLAST of Lag0028262 vs. NCBI nr
Match: PON42276.1 (hypothetical protein PanWU01x14_283280 [Parasponia andersonii])

HSP 1 Score: 66.6 bits (161), Expect = 2.7e-07
Identity = 42/124 (33.87%), Postives = 63/124 (50.81%), Query Frame = 0

Query: 66  ARAKYVEMLR-RDFLFDRGF-GD-----DLPRLLWTGIANHGWSQFCAKPDPVNSNIVRE 125
           A  +Y E ++ R    ++GF GD     + P  +   I  H W  FCA P+ + + +VRE
Sbjct: 21  AETRYEENIQNRPLSAEKGFVGDNSKPLEKPPFIEDVITQHNWQLFCAHPEDLIAPLVRE 80

Query: 126 FYANIDDQEGFQAIVRGVPVDWSPRAINSLFNLQDFPHACFNEMVVAPSNDQLNAAVREV 183
           FYAN+ + +     VRGV V  S  AIN+++ L D P    +E V A +  +L   +  V
Sbjct: 81  FYANMTNPDDDTVYVRGVQVPLSAEAINTIYGLGD-PVDEHSEFVEAITEPELATVLETV 140

BLAST of Lag0028262 vs. NCBI nr
Match: PON90635.1 (hypothetical protein TorRG33x02_134920 [Trema orientale])

HSP 1 Score: 65.9 bits (159), Expect = 4.6e-07
Identity = 41/112 (36.61%), Postives = 55/112 (49.11%), Query Frame = 0

Query: 61  FINNLARAKYVEMLRRDFL-FDRGFGDD------LPRLLWTGIANHGWSQFCAKPDPVNS 120
           F +  A A+Y E ++   L  ++GF  +       P  +   I  H W  FCA  +    
Sbjct: 16  FDSEAAEARYEEHIKNQPLGAEKGFAWNNNEPLGQPPFIADVIIQHNWQLFCAHHEDPIV 75

Query: 121 NIVREFYANIDDQEGFQAIVRGVPVDWSPRAINSLFNLQD--FPHACFNEMV 164
            +VREFYAN+ D E     V+GV V WS  AIN+LF L D    H+ F E V
Sbjct: 76  PLVREFYANLTDPEEDTVYVKGVQVPWSEEAINTLFGLGDPVDEHSAFVEDV 127

BLAST of Lag0028262 vs. NCBI nr
Match: PON85987.1 (hypothetical protein TorRG33x02_181920, partial [Trema orientale])

HSP 1 Score: 65.5 bits (158), Expect = 6.0e-07
Identity = 29/58 (50.00%), Postives = 35/58 (60.34%), Query Frame = 0

Query: 96  IANHGWSQFCAKPDPVNSNIVREFYANIDDQEGFQAIVRGVPVDWSPRAINSLFNLQD 154
           I  H W QFCA P+     +VREFYAN+ D E     VRGV V W+  AIN++F L D
Sbjct: 90  INQHNWRQFCAHPEDPIVPLVREFYANLTDPEEDTVYVRGVQVPWTEEAINTVFGLGD 147

BLAST of Lag0028262 vs. ExPASy TrEMBL
Match: A0A2P5BCG4 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_251180 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.5e-08
Identity = 30/58 (51.72%), Postives = 35/58 (60.34%), Query Frame = 0

Query: 96  IANHGWSQFCAKPDPVNSNIVREFYANIDDQEGFQAIVRGVPVDWSPRAINSLFNLQD 154
           I  H W QFCA P+     +VREFYAN+ D E     VRGV V WS  AIN++F L D
Sbjct: 67  ITQHNWKQFCAHPEDPIVPLVREFYANLTDPEENTVYVRGVQVSWSEEAINAVFGLGD 124

BLAST of Lag0028262 vs. ExPASy TrEMBL
Match: A0A6A2ZUE4 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110733pilonHSYRG00282 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 7.7e-08
Identity = 32/98 (32.65%), Postives = 50/98 (51.02%), Query Frame = 0

Query: 61  FINNLARAKYVEMLRRDFLFDRGF------GDDLPRLLWTGIANHGWSQFCAKPDPVNSN 120
           F++  A+  Y  +  R   F+ GF        +L   +   +  H W +F   P PVN+ 
Sbjct: 15  FVDEAAKEHYQTIKNRRVFFELGFVFSEAENANLGSEVLDVVTKHKWQKFAKHPVPVNAT 74

Query: 121 IVREFYANIDDQEGFQAIVRGVPVDWSPRAINSLFNLQ 153
           IV+EFY+NI +      +VRG+ + ++P AIN  F LQ
Sbjct: 75  IVKEFYSNITEPNQHAVMVRGISIRFTPTAINRYFKLQ 112

BLAST of Lag0028262 vs. ExPASy TrEMBL
Match: A0A2P5B0K0 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_283280 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.3e-07
Identity = 42/124 (33.87%), Postives = 63/124 (50.81%), Query Frame = 0

Query: 66  ARAKYVEMLR-RDFLFDRGF-GD-----DLPRLLWTGIANHGWSQFCAKPDPVNSNIVRE 125
           A  +Y E ++ R    ++GF GD     + P  +   I  H W  FCA P+ + + +VRE
Sbjct: 21  AETRYEENIQNRPLSAEKGFVGDNSKPLEKPPFIEDVITQHNWQLFCAHPEDLIAPLVRE 80

Query: 126 FYANIDDQEGFQAIVRGVPVDWSPRAINSLFNLQDFPHACFNEMVVAPSNDQLNAAVREV 183
           FYAN+ + +     VRGV V  S  AIN+++ L D P    +E V A +  +L   +  V
Sbjct: 81  FYANMTNPDDDTVYVRGVQVPLSAEAINTIYGLGD-PVDEHSEFVEAITEPELATVLETV 140

BLAST of Lag0028262 vs. ExPASy TrEMBL
Match: A0A2P5EYL5 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_134920 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.2e-07
Identity = 41/112 (36.61%), Postives = 55/112 (49.11%), Query Frame = 0

Query: 61  FINNLARAKYVEMLRRDFL-FDRGFGDD------LPRLLWTGIANHGWSQFCAKPDPVNS 120
           F +  A A+Y E ++   L  ++GF  +       P  +   I  H W  FCA  +    
Sbjct: 16  FDSEAAEARYEEHIKNQPLGAEKGFAWNNNEPLGQPPFIADVIIQHNWQLFCAHHEDPIV 75

Query: 121 NIVREFYANIDDQEGFQAIVRGVPVDWSPRAINSLFNLQD--FPHACFNEMV 164
            +VREFYAN+ D E     V+GV V WS  AIN+LF L D    H+ F E V
Sbjct: 76  PLVREFYANLTDPEEDTVYVKGVQVPWSEEAINTLFGLGDPVDEHSAFVEDV 127

BLAST of Lag0028262 vs. ExPASy TrEMBL
Match: A0A2P5EK98 (Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_181920 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.9e-07
Identity = 29/58 (50.00%), Postives = 35/58 (60.34%), Query Frame = 0

Query: 96  IANHGWSQFCAKPDPVNSNIVREFYANIDDQEGFQAIVRGVPVDWSPRAINSLFNLQD 154
           I  H W QFCA P+     +VREFYAN+ D E     VRGV V W+  AIN++F L D
Sbjct: 90  INQHNWRQFCAHPEDPIVPLVREFYANLTDPEEDTVYVRGVQVPWTEEAINTVFGLGD 147

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PON46472.19.3e-0851.72hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii][more]
KAE8695166.11.6e-0732.65hypothetical protein F3Y22_tig00110733pilonHSYRG00282 [Hibiscus syriacus][more]
PON42276.12.7e-0733.87hypothetical protein PanWU01x14_283280 [Parasponia andersonii][more]
PON90635.14.6e-0736.61hypothetical protein TorRG33x02_134920 [Trema orientale][more]
PON85987.16.0e-0750.00hypothetical protein TorRG33x02_181920, partial [Trema orientale][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2P5BCG44.5e-0851.72Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
A0A6A2ZUE47.7e-0832.65Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110733pilon... [more]
A0A2P5B0K01.3e-0733.87Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_283280 PE... [more]
A0A2P5EYL52.2e-0736.61Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_134920 PE=4 SV... [more]
A0A2P5EK982.9e-0750.00Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_181... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..55
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..55

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0028262.1Lag0028262.1mRNA