Lag0028209 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0028209
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Nuclear shuttle protein
Location	chr8: 15540063 .. 15540818 (-)
RNA-Seq Expression	Lag0028209
Synteny	Lag0028209

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACTATTCGTCGACCAAAGGTAGCCGGCGGCGAGTATGCACGTCGGAGAACAACGTATGATCGACGTCGTCCTCAATACCGTCTACCCGTTCGAAGAGTGTTATATCGCGACGTGGATAGGGAGAGGCTTCGCCTTGTTAGGCTTCATGAAATCCACTCAGGTGACCCTATGACGGTATACAACAACTGTAGTGTTAGCCGATTTATCCAATGTCCTCGTATGGACCATGGTATCACCGGACGACGCAGAGACTACATCCGTATTCGACAGATCGGCCTTTACGGCCGCATAAAGTTAAACTTAGCTCGGATCGAAGGAGCGATGGACACTGGAATATCCAATGTCACAGGCGTGTTCACAATGGTCCTTCTTCGTGATAAGACCCCGTATCTGCCTACCGGTGTCGAGTTACTGCCAGATTTCAAGGAGCTGTTTGGATCGTTAGAATCAAGTTACGGAAAATTAAGCGTGATGCCGAAACATGATGGTCGTTTCTGTATTGAACGGGTATGGCAGAAGAACATCTGTGTTGACCGGAAGTATTACGAGTTTCCGATTAAGATGATTCGTCAGTACTACACTCGACGCTACGCTATTTGGACTTCTTTTAGAGACACAGGCGATTTACACGGTGGCGGGAACTATCGAAACGTTTCAAAGAATGGCTTTTTCATTTGCTATACATGGGTGTCGGAGTCGACATCCTTATGCAACTTGTATCTTGATACCGAAATGGTATTCTATGGGTGA

mRNA sequence

ATGGAAACTATTCGTCGACCAAAGGTAGCCGGCGGCGAGTATGCACGTCGGAGAACAACGTATGATCGACGTCGTCCTCAATACCGTCTACCCGTTCGAAGAGTGTTATATCGCGACGTGGATAGGGAGAGGCTTCGCCTTGTTAGGCTTCATGAAATCCACTCAGGTGACCCTATGACGGTATACAACAACTGTAGTGTTAGCCGATTTATCCAATGTCCTCGTATGGACCATGGTATCACCGGACGACGCAGAGACTACATCCGTATTCGACAGATCGGCCTTTACGGCCGCATAAAGTTAAACTTAGCTCGGATCGAAGGAGCGATGGACACTGGAATATCCAATGTCACAGGCGTGTTCACAATGGTCCTTCTTCGTGATAAGACCCCGTATCTGCCTACCGGTGTCGAGTTACTGCCAGATTTCAAGGAGCTGTTTGGATCGTTAGAATCAAGTTACGGAAAATTAAGCGTGATGCCGAAACATGATGGTCGTTTCTGTATTGAACGGGTATGGCAGAAGAACATCTGTGTTGACCGGAAGTATTACGAGTTTCCGATTAAGATGATTCGTCAGTACTACACTCGACGCTACGCTATTTGGACTTCTTTTAGAGACACAGGCGATTTACACGGTGGCGGGAACTATCGAAACGTTTCAAAGAATGGCTTTTTCATTTGCTATACATGGGTGTCGGAGTCGACATCCTTATGCAACTTGTATCTTGATACCGAAATGGTATTCTATGGGTGA

Coding sequence (CDS)

ATGGAAACTATTCGTCGACCAAAGGTAGCCGGCGGCGAGTATGCACGTCGGAGAACAACGTATGATCGACGTCGTCCTCAATACCGTCTACCCGTTCGAAGAGTGTTATATCGCGACGTGGATAGGGAGAGGCTTCGCCTTGTTAGGCTTCATGAAATCCACTCAGGTGACCCTATGACGGTATACAACAACTGTAGTGTTAGCCGATTTATCCAATGTCCTCGTATGGACCATGGTATCACCGGACGACGCAGAGACTACATCCGTATTCGACAGATCGGCCTTTACGGCCGCATAAAGTTAAACTTAGCTCGGATCGAAGGAGCGATGGACACTGGAATATCCAATGTCACAGGCGTGTTCACAATGGTCCTTCTTCGTGATAAGACCCCGTATCTGCCTACCGGTGTCGAGTTACTGCCAGATTTCAAGGAGCTGTTTGGATCGTTAGAATCAAGTTACGGAAAATTAAGCGTGATGCCGAAACATGATGGTCGTTTCTGTATTGAACGGGTATGGCAGAAGAACATCTGTGTTGACCGGAAGTATTACGAGTTTCCGATTAAGATGATTCGTCAGTACTACACTCGACGCTACGCTATTTGGACTTCTTTTAGAGACACAGGCGATTTACACGGTGGCGGGAACTATCGAAACGTTTCAAAGAATGGCTTTTTCATTTGCTATACATGGGTGTCGGAGTCGACATCCTTATGCAACTTGTATCTTGATACCGAAATGGTATTCTATGGGTGA

Protein sequence

METIRRPKVAGGEYARRRTTYDRRRPQYRLPVRRVLYRDVDRERLRLVRLHEIHSGDPMTVYNNCSVSRFIQCPRMDHGITGRRRDYIRIRQIGLYGRIKLNLARIEGAMDTGISNVTGVFTMVLLRDKTPYLPTGVELLPDFKELFGSLESSYGKLSVMPKHDGRFCIERVWQKNICVDRKYYEFPIKMIRQYYTRRYAIWTSFRDTGDLHGGGNYRNVSKNGFFICYTWVSESTSLCNLYLDTEMVFYG

Homology

[Close]

BLAST of Lag0028209 vs. NCBI nr
Match: NP_620299.1 (BV1 [Watermelon chlorotic stunt virus] >CAC18827.1 BV1 [Watermelon chlorotic stunt virus])

HSP 1 Score: 136.0 bits (341), Expect = 4.6e-28
Identity = 77/245 (31.43%), Postives = 122/245 (49.80%), Query Frame = 0


Query: 18  RTTYDRRRPQYRLPVRRVLYR----------DVDRERLRLVRLHEIHSGDPMTVYNNCSV 77
           ++T  R+R Q+  P + VL+R          +  RE+L    L ++HSG    + N C V
Sbjct: 9   QSTRGRKRKQFSRPFKSVLFRRRQASRRLFAEKPREKLSRRCLEDVHSGPSYALMNQCDV 68

Query: 78  SRFIQCPRMD-HGITGRRRDYIRIRQIGLYGRIKLNLARIEGAMDTGISNVTGVFTMVLL 137
           + ++  P +   G  GR RD+I++  + + G I +     E   D   S + G+F ++L+
Sbjct: 69  TSYVTYPILGLEGNGGRSRDFIKLMNVRVSGTINVTPLPAEPMSDR--SPMNGIFVLLLI 128

Query: 138 RDKTPYLPTGVELLPDFKELFGSLESSYGKLSVMPKHDGRFCIERVWQKNICVDRKYYEF 197
            D+ P++P GV +LP FKELFG  E  YG   V      R+ I  +W++ +  D    + 
Sbjct: 129 VDRKPFVPEGVNVLPSFKELFGEYECVYGIPRVKENQRHRYRILGMWKQYVSGDDSAVQK 188

Query: 198 PIKMIRQYYTRRYAIWTSFRDTGDLHGGGNYRNVSKNGFFICYTWVSESTSLCNLYLDTE 252
              + R     RY +W +F+D   +  GGNY+NVSKN    C  WVS   S C +Y    
Sbjct: 189 DFTLRRNLSGPRYNVWAAFKDIDQMSTGGNYKNVSKNAILACNVWVSTVRSKCEVYSQFV 248

[Close]

BLAST of Lag0028209 vs. NCBI nr
Match: ADW24247.1 (NSP protein [Kudzu mosaic virus])

HSP 1 Score: 134.0 bits (336), Expect = 1.7e-27
Identity = 80/246 (32.52%), Postives = 124/246 (50.41%), Query Frame = 0


Query: 7   PKVAGGEYARRRTTYDRRRPQYR-LPVRRVLYRDVDRERLRLVRLHEIHSGDPMTVYNNC 66
           P+   G++ R+   Y+R    YR L V R L  D     L +  + E   G  MT+ +N 
Sbjct: 12  PRRFNGQFKRKLRPYNRGLNTYRKLRVARKLSYDPSVRPLSINTVVERQHGSHMTLGSNS 71

Query: 67  SVSRFIQCPRMDHGITGRRRDYIRIRQIGLYGRIKLNLARIEGAMDTGISNVTGVFTMVL 126
            ++ F++ P       GR RDYI++  +   G I + +A  +  MD G S   GVF M L
Sbjct: 72  DITSFVEYPVRGINGDGRSRDYIKLLHLSASGVINVKVASSDQVMDAG-SRHNGVFVMSL 131

Query: 127 LRDKTPYLPTGVELLPDFKELFGSLESSYGKLSVMPKHDGRFCIERVWQKNICVDRKYYE 186
           L+D  P+LP GV  LP + ELFG   S+Y  + ++  H  RF I    +K +       +
Sbjct: 132 LQDMKPFLPDGVNSLPTYAELFGPYSSAYVNMHLLDSHKQRFRILGSVKKFVSCGMDAVD 191

Query: 187 FPIKMIRQYYTRRYAIWTSFRDTGDLHGGGNYRNVSKNGFFICYTWVSESTSLCNLYLDT 246
            P K+  +    RY +W SF+D  + + GGNYRN++KN   + Y +VS  +  C  ++  
Sbjct: 192 IPFKLELKLSNGRYPLWASFKDAEEGNCGGNYRNIAKNAIIVSYAFVSLHSLKCEPFVQF 251

Query: 247 EMVFYG 252
           E+ + G
Sbjct: 252 ELRYMG 256

[Close]

BLAST of Lag0028209 vs. NCBI nr
Match: CAB65499.1 (BV1 protein [Watermelon chlorotic stunt virus-[SD]])

HSP 1 Score: 133.7 bits (335), Expect = 2.3e-27
Identity = 76/243 (31.28%), Postives = 119/243 (48.97%), Query Frame = 0


Query: 20  TYDRRRPQYRLPVR----------RVLYRDVDRERLRLVRLHEIHSGDPMTVYNNCSVSR 79
           T  R+R Q+  P +          R L+ +  RE+L    L ++HSG    + N C V+ 
Sbjct: 11  TRGRKRKQFSRPFKSGLFRRRQASRRLFAEKQREKLSRRCLEDVHSGPSYALMNQCDVTS 70

Query: 80  FIQCPRMD-HGITGRRRDYIRIRQIGLYGRIKLNLARIEGAMDTGISNVTGVFTMVLLRD 139
           ++  P +   G  GR RD+I++  + + G I +     E   D   S + G+F ++L+ D
Sbjct: 71  YVTYPILGLEGNGGRSRDFIKLMNVRVSGTINVTPLAAEPMSDR--SPMNGIFVLLLIVD 130

Query: 140 KTPYLPTGVELLPDFKELFGSLESSYGKLSVMPKHDGRFCIERVWQKNICVDRKYYEFPI 199
           + P++P GV +LP FKELFG  E  YG   V      R+ I  +W++ +  D    +   
Sbjct: 131 RKPFVPEGVNVLPSFKELFGEYECVYGIPRVKENQRHRYRILGMWKQYVSGDDSAVQKDF 190

Query: 200 KMIRQYYTRRYAIWTSFRDTGDLHGGGNYRNVSKNGFFICYTWVSESTSLCNLYLDTEMV 252
            + R     RY +W +F+D   +  GGNY+NVSKN    C  WVS   S C +Y    + 
Sbjct: 191 TLRRNLSGPRYNVWAAFKDMDQMSTGGNYKNVSKNAILACNVWVSTFRSKCEVYSQFVLD 250

[Close]

BLAST of Lag0028209 vs. NCBI nr
Match: AIQ77739.1 (BV1 [Watermelon chlorotic stunt virus])

HSP 1 Score: 133.3 bits (334), Expect = 3.0e-27
Identity = 77/244 (31.56%), Postives = 119/244 (48.77%), Query Frame = 0


Query: 12  GEYARRRTTYDR---RRPQYRLPVRRVLYRDVDRERLRLVRLHEIHSGDPMTVYNNCSVS 71
           G   R+R  + R     P  R    R L+ +  RE+L    L ++HSG    + N C V+
Sbjct: 10  GTRGRKRKQFSRPFKSGPFRRRQASRRLFAEKPREKLSRRCLEDVHSGSSYALMNQCDVT 69

Query: 72  RFIQCPRMD-HGITGRRRDYIRIRQIGLYGRIKLNLARIEGAMDTGISNVTGVFTMVLLR 131
            ++  P +   G  GR RD+I++  + + G I +     E   D   S + G+F ++L+ 
Sbjct: 70  SYVTYPILGLEGNGGRSRDFIKLMNVRVSGTINVTPLPAEPMSDR--SPMNGIFVLLLIV 129

Query: 132 DKTPYLPTGVELLPDFKELFGSLESSYGKLSVMPKHDGRFCIERVWQKNICVDRKYYEFP 191
           D+ P++P GV +LP FKELFG  E  YG   V      R+ I  +W++ +  D    +  
Sbjct: 130 DRKPFVPEGVNVLPSFKELFGEYECVYGIPRVKENQRHRYRILGMWKQYVSGDDSAVQKD 189

Query: 192 IKMIRQYYTRRYAIWTSFRDTGDLHGGGNYRNVSKNGFFICYTWVSESTSLCNLYLDTEM 251
             + R     RY +W +F+D   +  GGNY+NVSKN    C  WVS   S C +Y    +
Sbjct: 190 FTLRRNLSGPRYNVWAAFKDIDQMSTGGNYKNVSKNAILACNVWVSTVQSKCEVYSQFVL 249

[Close]

BLAST of Lag0028209 vs. NCBI nr
Match: ANN88436.1 (BV1 protein [Watermelon chlorotic stunt virus])

HSP 1 Score: 132.9 bits (333), Expect = 3.9e-27
Identity = 76/243 (31.28%), Postives = 119/243 (48.97%), Query Frame = 0


Query: 20  TYDRRRPQYRLPVR----------RVLYRDVDRERLRLVRLHEIHSGDPMTVYNNCSVSR 79
           T  R+R Q+  P +          R L+ +  RE+L    L ++HSG    + N C V+ 
Sbjct: 11  TRGRKRKQFSRPFKSGLFRRRQASRRLFAEKQREKLSRRCLEDVHSGPSYALMNQCDVTS 70

Query: 80  FIQCPRMD-HGITGRRRDYIRIRQIGLYGRIKLNLARIEGAMDTGISNVTGVFTMVLLRD 139
           ++  P +   G  GR RD+I++  + + G I +     E   D   S + G+F ++L+ D
Sbjct: 71  YVTYPILGLDGNGGRSRDFIKLMNVRVSGTINVTPLPAEPMSDR--SPMNGIFVLLLIVD 130

Query: 140 KTPYLPTGVELLPDFKELFGSLESSYGKLSVMPKHDGRFCIERVWQKNICVDRKYYEFPI 199
           + P++P GV +LP FKELFG  E  YG   V      R+ I  +W++ +  D    +   
Sbjct: 131 RKPFVPEGVNVLPSFKELFGEYECVYGIPRVKENQRHRYRILGMWKQYVSGDDSAVQKDF 190

Query: 200 KMIRQYYTRRYAIWTSFRDTGDLHGGGNYRNVSKNGFFICYTWVSESTSLCNLYLDTEMV 252
            + R     RY +W +F+D   +  GGNY+NVSKN    C  WVS   S C +Y    + 
Sbjct: 191 TLRRNLSGPRYNVWAAFKDIDQMSTGGNYKNVSKNAILACSVWVSTVRSKCEVYSQFVLD 250

[Close]

BLAST of Lag0028209 vs. ExPASy Swiss-Prot
Match: Q9YPS8 (Nuclear shuttle protein OS=Mungbean yellow mosaic virus (strain Vigna) OX=223295 GN=BR1 PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 9.0e-27
Identity = 69/220 (31.36%), Postives = 116/220 (52.73%), Query Frame = 0


Query: 33  RRVLYRDVDRERLRLVRLHEIHSGDPMTVYNNCSVSRFIQCPRMDHGITGRRRDYIRIRQ 92
           R++ Y  V+RE +R   + E+  G  M++  N  VS F+Q P       GR RDYI++ +
Sbjct: 40  RKLSYDRVERE-MRTNSIVEVQHGSHMSLEKNTDVSSFVQYPARGINGDGRCRDYIKLLK 99

Query: 93  IGLYGRIKLNLARIEGAMDTGISNVTGVFTMVLLRDKTPYLPTGVELLPDFKELFGSLES 152
           + + G I +  +  +  M+ G   ++G+F + +L DK PYLP GV  LP F ELFG   +
Sbjct: 100 LDVSGVINIKSSNGDQDMEPG-DKLSGLFILTVLLDKKPYLPEGVNKLPSFAELFGPYSA 159

Query: 153 SYGKLSVMPKHDGRFCIERVWQKNI-CVDRKYYEFPIKMIRQYYTRRYAIWTSFRDTGDL 212
           +Y  + ++     RF +    +K + C     Y  P+K+      R+  +WT+F+D    
Sbjct: 160 AYANMHLLDSQKPRFKVLGTIKKFVNCTPGTLYG-PLKLNMPLSRRKCPLWTTFKDPDQG 219

Query: 213 HGGGNYRNVSKNGFFICYTWVSESTSLCNLYLDTEMVFYG 252
           + GGNY+N+SKN   + Y ++S  + +   Y   E+ + G
Sbjct: 220 NCGGNYKNISKNAIVLSYAFISMHSLIVEPYFQFELKYVG 256

[Close]

BLAST of Lag0028209 vs. ExPASy Swiss-Prot
Match: P14970 (Nuclear shuttle protein OS=African cassava mosaic virus (isolate Nigerian) OX=222073 GN=BR1 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.5e-26
Identity = 77/238 (32.35%), Postives = 118/238 (49.58%), Query Frame = 0


Query: 16  RRRTTYDRRRPQYRLPVRRVLYRDVDRERLRLVRLHEIHSGDPMTVYNNCSVSRFIQCPR 75
           RR+      RP  R   RR+ Y  V+R  +  V   + H GD   +  N S + F+  P 
Sbjct: 26  RRKYVGGHTRPSVR---RRLTYEPVERPLVHNVLCEKQH-GDVFNLQQNTSYTSFVTYPS 85

Query: 76  MDHGITGRRRDYIRIRQIGLYGRIKLNLARIEGAMDTGISNVTGVFTMVLLRDKTPYLPT 135
                 GR RDYI+++ + + G I       +  M+    +V GVF   L+ D  PYLP 
Sbjct: 86  RGPSGDGRSRDYIKLQSMSVSGVIHAKANCNDDPMEVS-HDVNGVFVFSLIMDTKPYLPA 145

Query: 136 GVELLPDFKELFGSLESSYGKLSVMPKHDGRFCIERVWQKNI--CVDRKYYEFPIKMIRQ 195
           GV+ LP F+ELFG+  + Y  L ++     R+ +    ++ +    D K  +F  +  ++
Sbjct: 146 GVQALPTFEELFGAYSACYVNLRLLNNQQHRYRVLHSVKRFVSSAGDTKVSQF--RFNKR 205

Query: 196 YYTRRYAIWTSFRDTGDLHGGGNYRNVSKNGFFICYTWVSESTSLCNLYLDTEMVFYG 252
             TRRY IW SF D   ++ GGNYRN+SKN   + Y +VSE +  C  ++  E  + G
Sbjct: 206 LSTRRYNIWASFHDGDLVNAGGNYRNISKNAILVSYAFVSEHSMSCKPFVQIETSYVG 256

[Close]

BLAST of Lag0028209 vs. ExPASy Swiss-Prot
Match: P03565 (Nuclear shuttle protein OS=African cassava mosaic virus (isolate West Kenyan 844) OX=10818 GN=BR1 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.9e-25
Identity = 77/238 (32.35%), Postives = 115/238 (48.32%), Query Frame = 0


Query: 16  RRRTTYDRRRPQYRLPVRRVLYRDVDRERLRLVRLHEIHSGDPMTVYNNCSVSRFIQCPR 75
           +R+      RP  R   RR+LY  V+R     V   + H GD   +  N S + F+  P 
Sbjct: 26  KRKYVAGHTRPCVR---RRLLYEPVERPFGHNVLCEKQH-GDVFNLQQNTSYTSFVTYPS 85

Query: 76  MDHGITGRRRDYIRIRQIGLYGRIKLNLARIEGAMDTGISNVTGVFTMVLLRDKTPYLPT 135
                 GR RDYI+++ + + G I       +  M+     V GVF   L+ D  PYLP 
Sbjct: 86  RGPSGDGRSRDYIKLQSMSVSGVIHAKANGNDDPMEVS-PVVNGVFVFSLIMDTKPYLPA 145

Query: 136 GVELLPDFKELFGSLESSYGKLSVMPKHDGRFCIERVWQKNICV--DRKYYEFPIKMIRQ 195
           GV+ LP F+ELFG   + Y  L ++     R+ +    ++ +    D K  +F  +  ++
Sbjct: 146 GVQGLPTFEELFGPYSACYVNLRLLNNQQHRYRVLHSVKRFVSSSGDTKVSQF--RFNKR 205

Query: 196 YYTRRYAIWTSFRDTGDLHGGGNYRNVSKNGFFICYTWVSESTSLCNLYLDTEMVFYG 252
             TRRY IW SF D   ++ GGNYRN+SKN   + Y +VSE    C  ++  E  + G
Sbjct: 206 LSTRRYTIWASFHDGDLVNAGGNYRNISKNAILVSYAFVSEHAMSCKPFVQIETSYVG 256

[Close]

BLAST of Lag0028209 vs. ExPASy Swiss-Prot
Match: P03564 (Nuclear shuttle protein OS=Tomato golden mosaic virus (strain Yellow vein) OX=223341 GN=BR1 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.5e-23
Identity = 67/239 (28.03%), Postives = 122/239 (51.05%), Query Frame = 0


Query: 17  RRTTYDRRRPQYRLPVRRVLYRDV---DRERLRLVRLHEIHSGDPMTVYNNCSVSRFIQC 76
           R +T  R R   R+  +R   + V   D  ++   R+HE   G    + +N ++S FI  
Sbjct: 20  RHSTGKRSRNVSRIDFKRRSSKYVHGNDDSKMANQRIHENQFGPEFVMVHNTAISTFITF 79

Query: 77  PRMDHGITGRRRDYIRIRQIGLYGRIKLNLARIEGAMDTGISNVTGVFTMVLLRDKTPYL 136
           P +      R R YI+++++   G +K+    ++ +MD     + GVF++V++ D+ P+L
Sbjct: 80  PSLGKTEPSRSRSYIKLKRLRFKGTVKIERVHVDLSMDGPSPKIEGVFSLVVVVDRQPHL 139

Query: 137 -PTGVELLPDFKELFGSLESSYGKLSVMPKHDGRFCIERVWQKNICVDRKYYEFPIKMIR 196
            PTG   L  F ELFG+   S+G L+V      RF I  V+++ I V++      ++ + 
Sbjct: 140 SPTG--CLHTFDELFGARIHSHGNLAVSSALKDRFYIRHVFKRVISVEKDSTMIDLEGMT 199

Query: 197 QYYTRRYAIWTSFRDTGDLHGGGNYRNVSKNGFFICYTWVSESTSLCNLYLDTEMVFYG 252
            +  RR+  W++F+D       G Y N+SKN   + Y W+S+  S  + ++  ++ + G
Sbjct: 200 SFTNRRFNCWSAFKDFDRQACNGVYGNISKNAILVYYCWMSDIVSKASTFVSFDLDYVG 256

[Close]

BLAST of Lag0028209 vs. ExPASy Swiss-Prot
Match: P21945 (Nuclear shuttle protein OS=Abutilon mosaic virus (isolate West India) OX=10816 GN=BR1 PE=1 SV=3)

HSP 1 Score: 109.0 bits (271), Expect = 7.9e-23
Identity = 61/212 (28.77%), Postives = 105/212 (49.53%), Query Frame = 0


Query: 41  DRERLRLVRLHEIHSGDPMTVYNNCSVSRFIQCPRMDHGITGRRRDYIRIRQIGLYGRIK 100
           D  ++   R+HE   G    +  N ++S FI  P +      R R YIR++Q+   G +K
Sbjct: 47  DEPKMSAQRIHENQYGPEFVMAQNSAISSFISYPDLGRSEPNRSRSYIRLKQLRFKGTVK 106

Query: 101 LNLARIEGAMDTGISNVTGVFTMVLLRDKTPYL-PTGVELLPDFKELFGSLESSYGKLSV 160
           +    +   MD     V GVF++V++ D+ P+L P+G   L  F ELFG+   S+G LSV
Sbjct: 107 IEQVPLAMNMDGSTPKVEGVFSLVIVVDRKPHLGPSG--CLHTFDELFGARIHSHGNLSV 166

Query: 161 MPKHDGRFCIERVWQKNICVDRKYYEFPIKMIRQYYTRRYAIWTSFRDTGDLHGGGNYRN 220
            P    R+ I  V ++ + V++      ++       RR   W +F+D       G Y N
Sbjct: 167 TPALKDRYYIRHVCKRVLSVEKDTLMVDVEGSIPLSNRRINCWATFKDVDRESCKGVYDN 226

Query: 221 VSKNGFFICYTWVSESTSLCNLYLDTEMVFYG 252
           +SKN   + Y W+S++ +  + ++  ++ + G
Sbjct: 227 ISKNALLVYYCWMSDTPAKASTFVSFDLDYIG 256

[Close]

BLAST of Lag0028209 vs. ExPASy TrEMBL
Match: Q9DHW2 (Nuclear shuttle protein OS=Watermelon chlorotic stunt virus OX=35341 GN=BV1 PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.2e-28
Identity = 77/245 (31.43%), Postives = 122/245 (49.80%), Query Frame = 0


Query: 18  RTTYDRRRPQYRLPVRRVLYR----------DVDRERLRLVRLHEIHSGDPMTVYNNCSV 77
           ++T  R+R Q+  P + VL+R          +  RE+L    L ++HSG    + N C V
Sbjct: 9   QSTRGRKRKQFSRPFKSVLFRRRQASRRLFAEKPREKLSRRCLEDVHSGPSYALMNQCDV 68

Query: 78  SRFIQCPRMD-HGITGRRRDYIRIRQIGLYGRIKLNLARIEGAMDTGISNVTGVFTMVLL 137
           + ++  P +   G  GR RD+I++  + + G I +     E   D   S + G+F ++L+
Sbjct: 69  TSYVTYPILGLEGNGGRSRDFIKLMNVRVSGTINVTPLPAEPMSDR--SPMNGIFVLLLI 128

Query: 138 RDKTPYLPTGVELLPDFKELFGSLESSYGKLSVMPKHDGRFCIERVWQKNICVDRKYYEF 197
            D+ P++P GV +LP FKELFG  E  YG   V      R+ I  +W++ +  D    + 
Sbjct: 129 VDRKPFVPEGVNVLPSFKELFGEYECVYGIPRVKENQRHRYRILGMWKQYVSGDDSAVQK 188

Query: 198 PIKMIRQYYTRRYAIWTSFRDTGDLHGGGNYRNVSKNGFFICYTWVSESTSLCNLYLDTE 252
              + R     RY +W +F+D   +  GGNY+NVSKN    C  WVS   S C +Y    
Sbjct: 189 DFTLRRNLSGPRYNVWAAFKDIDQMSTGGNYKNVSKNAILACNVWVSTVRSKCEVYSQFV 248

[Close]

BLAST of Lag0028209 vs. ExPASy TrEMBL
Match: E9LZR0 (Nuclear shuttle protein OS=Kudzu mosaic virus OX=390437 GN=BV1 PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 8.5e-28
Identity = 80/246 (32.52%), Postives = 124/246 (50.41%), Query Frame = 0


Query: 7   PKVAGGEYARRRTTYDRRRPQYR-LPVRRVLYRDVDRERLRLVRLHEIHSGDPMTVYNNC 66
           P+   G++ R+   Y+R    YR L V R L  D     L +  + E   G  MT+ +N 
Sbjct: 12  PRRFNGQFKRKLRPYNRGLNTYRKLRVARKLSYDPSVRPLSINTVVERQHGSHMTLGSNS 71

Query: 67  SVSRFIQCPRMDHGITGRRRDYIRIRQIGLYGRIKLNLARIEGAMDTGISNVTGVFTMVL 126
            ++ F++ P       GR RDYI++  +   G I + +A  +  MD G S   GVF M L
Sbjct: 72  DITSFVEYPVRGINGDGRSRDYIKLLHLSASGVINVKVASSDQVMDAG-SRHNGVFVMSL 131

Query: 127 LRDKTPYLPTGVELLPDFKELFGSLESSYGKLSVMPKHDGRFCIERVWQKNICVDRKYYE 186
           L+D  P+LP GV  LP + ELFG   S+Y  + ++  H  RF I    +K +       +
Sbjct: 132 LQDMKPFLPDGVNSLPTYAELFGPYSSAYVNMHLLDSHKQRFRILGSVKKFVSCGMDAVD 191

Query: 187 FPIKMIRQYYTRRYAIWTSFRDTGDLHGGGNYRNVSKNGFFICYTWVSESTSLCNLYLDT 246
            P K+  +    RY +W SF+D  + + GGNYRN++KN   + Y +VS  +  C  ++  
Sbjct: 192 IPFKLELKLSNGRYPLWASFKDAEEGNCGGNYRNIAKNAIIVSYAFVSLHSLKCEPFVQF 251

Query: 247 EMVFYG 252
           E+ + G
Sbjct: 252 ELRYMG 256

[Close]

BLAST of Lag0028209 vs. ExPASy TrEMBL
Match: Q9Q1S0 (Nuclear shuttle protein OS=Watermelon chlorotic stunt virus-[SD] OX=223363 GN=BV1 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.1e-27
Identity = 76/243 (31.28%), Postives = 119/243 (48.97%), Query Frame = 0


Query: 20  TYDRRRPQYRLPVR----------RVLYRDVDRERLRLVRLHEIHSGDPMTVYNNCSVSR 79
           T  R+R Q+  P +          R L+ +  RE+L    L ++HSG    + N C V+ 
Sbjct: 11  TRGRKRKQFSRPFKSGLFRRRQASRRLFAEKQREKLSRRCLEDVHSGPSYALMNQCDVTS 70

Query: 80  FIQCPRMD-HGITGRRRDYIRIRQIGLYGRIKLNLARIEGAMDTGISNVTGVFTMVLLRD 139
           ++  P +   G  GR RD+I++  + + G I +     E   D   S + G+F ++L+ D
Sbjct: 71  YVTYPILGLEGNGGRSRDFIKLMNVRVSGTINVTPLAAEPMSDR--SPMNGIFVLLLIVD 130

Query: 140 KTPYLPTGVELLPDFKELFGSLESSYGKLSVMPKHDGRFCIERVWQKNICVDRKYYEFPI 199
           + P++P GV +LP FKELFG  E  YG   V      R+ I  +W++ +  D    +   
Sbjct: 131 RKPFVPEGVNVLPSFKELFGEYECVYGIPRVKENQRHRYRILGMWKQYVSGDDSAVQKDF 190

Query: 200 KMIRQYYTRRYAIWTSFRDTGDLHGGGNYRNVSKNGFFICYTWVSESTSLCNLYLDTEMV 252
            + R     RY +W +F+D   +  GGNY+NVSKN    C  WVS   S C +Y    + 
Sbjct: 191 TLRRNLSGPRYNVWAAFKDMDQMSTGGNYKNVSKNAILACNVWVSTFRSKCEVYSQFVLD 250

[Close]

BLAST of Lag0028209 vs. ExPASy TrEMBL
Match: A0A089MV55 (Nuclear shuttle protein OS=Watermelon chlorotic stunt virus OX=35341 PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.4e-27
Identity = 77/244 (31.56%), Postives = 119/244 (48.77%), Query Frame = 0


Query: 12  GEYARRRTTYDR---RRPQYRLPVRRVLYRDVDRERLRLVRLHEIHSGDPMTVYNNCSVS 71
           G   R+R  + R     P  R    R L+ +  RE+L    L ++HSG    + N C V+
Sbjct: 10  GTRGRKRKQFSRPFKSGPFRRRQASRRLFAEKPREKLSRRCLEDVHSGSSYALMNQCDVT 69

Query: 72  RFIQCPRMD-HGITGRRRDYIRIRQIGLYGRIKLNLARIEGAMDTGISNVTGVFTMVLLR 131
            ++  P +   G  GR RD+I++  + + G I +     E   D   S + G+F ++L+ 
Sbjct: 70  SYVTYPILGLEGNGGRSRDFIKLMNVRVSGTINVTPLPAEPMSDR--SPMNGIFVLLLIV 129

Query: 132 DKTPYLPTGVELLPDFKELFGSLESSYGKLSVMPKHDGRFCIERVWQKNICVDRKYYEFP 191
           D+ P++P GV +LP FKELFG  E  YG   V      R+ I  +W++ +  D    +  
Sbjct: 130 DRKPFVPEGVNVLPSFKELFGEYECVYGIPRVKENQRHRYRILGMWKQYVSGDDSAVQKD 189

Query: 192 IKMIRQYYTRRYAIWTSFRDTGDLHGGGNYRNVSKNGFFICYTWVSESTSLCNLYLDTEM 251
             + R     RY +W +F+D   +  GGNY+NVSKN    C  WVS   S C +Y    +
Sbjct: 190 FTLRRNLSGPRYNVWAAFKDIDQMSTGGNYKNVSKNAILACNVWVSTVQSKCEVYSQFVL 249

[Close]

BLAST of Lag0028209 vs. ExPASy TrEMBL
Match: A0A193H3N2 (Nuclear shuttle protein OS=Watermelon chlorotic stunt virus OX=35341 GN=BV1 PE=3 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.9e-27
Identity = 76/243 (31.28%), Postives = 119/243 (48.97%), Query Frame = 0


Query: 20  TYDRRRPQYRLPVR----------RVLYRDVDRERLRLVRLHEIHSGDPMTVYNNCSVSR 79
           T  R+R Q+  P +          R L+ +  RE+L    L ++HSG    + N C V+ 
Sbjct: 11  TRGRKRKQFSRPFKSGLFRRRQASRRLFAEKQREKLSRRCLEDVHSGPSYALMNQCDVTS 70

Query: 80  FIQCPRMD-HGITGRRRDYIRIRQIGLYGRIKLNLARIEGAMDTGISNVTGVFTMVLLRD 139
           ++  P +   G  GR RD+I++  + + G I +     E   D   S + G+F ++L+ D
Sbjct: 71  YVTYPILGLDGNGGRSRDFIKLMNVRVSGTINVTPLPAEPMSDR--SPMNGIFVLLLIVD 130

Query: 140 KTPYLPTGVELLPDFKELFGSLESSYGKLSVMPKHDGRFCIERVWQKNICVDRKYYEFPI 199
           + P++P GV +LP FKELFG  E  YG   V      R+ I  +W++ +  D    +   
Sbjct: 131 RKPFVPEGVNVLPSFKELFGEYECVYGIPRVKENQRHRYRILGMWKQYVSGDDSAVQKDF 190

Query: 200 KMIRQYYTRRYAIWTSFRDTGDLHGGGNYRNVSKNGFFICYTWVSESTSLCNLYLDTEMV 252
            + R     RY +W +F+D   +  GGNY+NVSKN    C  WVS   S C +Y    + 
Sbjct: 191 TLRRNLSGPRYNVWAAFKDIDQMSTGGNYKNVSKNAILACSVWVSTVRSKCEVYSQFVLD 250

The following BLAST results are available for this feature:

BLAST of Lag0028209 vs. NCBI nr


Match Name	E-value	Identity	Description
NP_620299.1	4.6e-28	31.43	BV1 [Watermelon chlorotic stunt virus] >CAC18827.1 BV1 [Watermelon chlorotic stu...	[more]
ADW24247.1	1.7e-27	32.52	NSP protein [Kudzu mosaic virus]	[more]
CAB65499.1	2.3e-27	31.28	BV1 protein [Watermelon chlorotic stunt virus-[SD]]	[more]
AIQ77739.1	3.0e-27	31.56	BV1 [Watermelon chlorotic stunt virus]	[more]
ANN88436.1	3.9e-27	31.28	BV1 protein [Watermelon chlorotic stunt virus]	[more]

BLAST of Lag0028209 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9YPS8	9.0e-27	31.36	Nuclear shuttle protein OS=Mungbean yellow mosaic virus (strain Vigna) OX=223295...	[more]
P14970	1.5e-26	32.35	Nuclear shuttle protein OS=African cassava mosaic virus (isolate Nigerian) OX=22...	[more]
P03565	4.9e-25	32.35	Nuclear shuttle protein OS=African cassava mosaic virus (isolate West Kenyan 844...	[more]
P03564	3.5e-23	28.03	Nuclear shuttle protein OS=Tomato golden mosaic virus (strain Yellow vein) OX=22...	[more]
P21945	7.9e-23	28.77	Nuclear shuttle protein OS=Abutilon mosaic virus (isolate West India) OX=10816 G...	[more]

BLAST of Lag0028209 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q9DHW2	2.2e-28	31.43	Nuclear shuttle protein OS=Watermelon chlorotic stunt virus OX=35341 GN=BV1 PE=3...	[more]
E9LZR0	8.5e-28	32.52	Nuclear shuttle protein OS=Kudzu mosaic virus OX=390437 GN=BV1 PE=3 SV=1	[more]
Q9Q1S0	1.1e-27	31.28	Nuclear shuttle protein OS=Watermelon chlorotic stunt virus-[SD] OX=223363 GN=BV...	[more]
A0A089MV55	1.4e-27	31.56	Nuclear shuttle protein OS=Watermelon chlorotic stunt virus OX=35341 PE=3 SV=1	[more]
A0A193H3N2	1.9e-27	31.28	Nuclear shuttle protein OS=Watermelon chlorotic stunt virus OX=35341 GN=BV1 PE=3...	[more]

BLAST of Lag0028209 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001530	Geminivirus BR1 coat protein	PRINTS	PR00225	GEMCOATBR1	coord: 215..234 score: 45.32 coord: 97..111 score: 25.59 coord: 194..209 score: 35.28 coord: 140..157 score: 50.0 coord: 71..90 score: 29.84 coord: 52..70 score: 26.99 coord: 166..183 score: 26.52
IPR000263	Geminivirus AR1/BR1 coat protein	PFAM	PF00844	Gemini_coat	coord: 16..246 e-value: 1.2E-30 score: 106.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0028209.1	Lag0028209.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051027	DNA transport
cellular_component	GO:0043657	host cell
cellular_component	GO:0019028	viral capsid
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0005198	structural molecule activity