Lag0028191 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0028191
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr8: 15093493 .. 15093912 (-)
RNA-Seq Expression	Lag0028191
Synteny	Lag0028191

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGACACTGAGAAGTGGTAGACAGTTGGAGGTCAGTTCAGAGAAGAAGTCGAAAAAAGAAGTAAAGAGCATGGATGAAGATGGAAGGGCTGAGGCACAAAAAGCCTCCTTTGAAAGGTCCCAACATCCTCCTAACTCTGTTGAATTTAATTATGATGTTTCTAACTCTTTTGCAGGAAAGAAAAAAGATGAAAAACAGAATGAAAGGCATGAAGAGAAGTTGAACGAGGAAGAAGTGGTCCCATGCAACCATCATGATAAAGGCTCGCACATTAGCCCGCCTAAGCGGAGGCACGAATGTCCTACCTTTGACTATAGGGAGTTACCTTTTCCTCAGCGATTTAAAAATGTTAAATTAGATGAGCAGTTTCAGAAATTCCTAGAGATGTTTAGAAAATTATCTGTGAACATTCCTTAG

mRNA sequence

ATGGTGACACTGAGAAGTGGTAGACAGTTGGAGGTCAGTTCAGAGAAGAAGTCGAAAAAAGAAGTAAAGAGCATGGATGAAGATGGAAGGGCTGAGGCACAAAAAGCCTCCTTTGAAAGGTCCCAACATCCTCCTAACTCTGTTGAATTTAATTATGATGTTTCTAACTCTTTTGCAGGAAAGAAAAAAGATGAAAAACAGAATGAAAGGCATGAAGAGAAGTTGAACGAGGAAGAAGTGGTCCCATGCAACCATCATGATAAAGGCTCGCACATTAGCCCGCCTAAGCGGAGGCACGAATGTCCTACCTTTGACTATAGGGAGTTACCTTTTCCTCAGCGATTTAAAAATGTTAAATTAGATGAGCAGTTTCAGAAATTCCTAGAGATGTTTAGAAAATTATCTGTGAACATTCCTTAG

Coding sequence (CDS)

ATGGTGACACTGAGAAGTGGTAGACAGTTGGAGGTCAGTTCAGAGAAGAAGTCGAAAAAAGAAGTAAAGAGCATGGATGAAGATGGAAGGGCTGAGGCACAAAAAGCCTCCTTTGAAAGGTCCCAACATCCTCCTAACTCTGTTGAATTTAATTATGATGTTTCTAACTCTTTTGCAGGAAAGAAAAAAGATGAAAAACAGAATGAAAGGCATGAAGAGAAGTTGAACGAGGAAGAAGTGGTCCCATGCAACCATCATGATAAAGGCTCGCACATTAGCCCGCCTAAGCGGAGGCACGAATGTCCTACCTTTGACTATAGGGAGTTACCTTTTCCTCAGCGATTTAAAAATGTTAAATTAGATGAGCAGTTTCAGAAATTCCTAGAGATGTTTAGAAAATTATCTGTGAACATTCCTTAG

Protein sequence

MVTLRSGRQLEVSSEKKSKKEVKSMDEDGRAEAQKASFERSQHPPNSVEFNYDVSNSFAGKKKDEKQNERHEEKLNEEEVVPCNHHDKGSHISPPKRRHECPTFDYRELPFPQRFKNVKLDEQFQKFLEMFRKLSVNIP

Homology

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BLAST of Lag0028191 vs. NCBI nr
Match: XP_027368880.1 (uncharacterized protein LOC113874865 [Abrus precatorius])

HSP 1 Score: 54.7 bits (130), Expect = 7.5e-04
Identity = 43/138 (31.16%), Postives = 70/138 (50.72%), Query Frame = 0


Query: 2   VTLRSGRQLEVSSEKKSKKEVKSMDEDGRAEAQKASFERSQHPPNSVEFNYDVSNSFAGK 61
           +TLRSG+ LEV   +  ++E+KS   + + + +  SFE              +SN F   
Sbjct: 242 ITLRSGKTLEVQPRESKEEEIKSPQMEDKVDVEDLSFE--------------ISNKF--- 301

Query: 62  KKDEKQNERHEEKLNEEEVVPCNHHDKGSHISPPKRRHECPTFDYRELPFPQRFKNVKLD 121
            +++ + +  E    +++VV     DK   +SP           Y ++PFPQR +    D
Sbjct: 302 -QEQGKQQFSESSKGKKKVV---DWDKTVELSP-----------YAKVPFPQRLQQQNQD 347

Query: 122 EQFQKFLEMFRKLSVNIP 140
           +QF KFLE+F+KL +NIP
Sbjct: 362 KQFSKFLEVFKKLQINIP 347

The following BLAST results are available for this feature:

BLAST of Lag0028191 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_027368880.1	7.5e-04	31.16	uncharacterized protein LOC113874865 [Abrus precatorius]	[more]

BLAST of Lag0028191 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 61..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..37

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0028191.1	Lag0028191.1	mRNA