Lag0028185 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0028185
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Reverse transcriptase domain-containing protein
Location	chr8: 15061385 .. 15062476 (-)
RNA-Seq Expression	Lag0028185
Synteny	Lag0028185

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACCTTTCCAATTGGATGATAGATAAAGATCTTTACTCGGCCCTTGAAGACAGTGATTGGGAAAAGGATTTCGATGTGAAGTTTCCATCTTTCTCTAAATTCTACCACCAAGAATCAAAGGATTCATTTAGAATTACCGCCTCAAGAGCATGTGATAGGCTGGCCCATTCCTATGTCTCTAGATCTGTAAGGTTCCTCCTAGGGCTGAAATTCCAAGATGCCATCCACAAATCAGCCTCCGTGCTTACTAGCATAGAAGAAGGGAAATCTATTATTAAGGGCTCATTACCCAGCCACATATCTGACCGTGAGTGCTTCTCCCATTACCAACTTTGCAAATAATTTGTGGATAGATAAGATCTTTGGTGCTCTGAATATATTTCCAAGGGCCCTTTGAAGAATTTAGTGAAAAAGACCCAGGCTTCAGATCGAAATGTTTGGAGTCATATTTAGTAGGAACTACTTTCCTCGTGGGAGATGTTTCTTCTTTATGAGAAATTGCCAAATCCACTTGGCCTAATAATAGTACTTGTAGTTAGTTCCACCATCCAATTTCAATACATTTTCAATTCATATCCTTGCTAGTTTCTTCTCAATTTTGTCAGAAGAAGTGAGGAAGAATTATGCTTACATTTAGACTTATTTCTGCTTATATTTTCAATTCATATTCTAGCGAGGAAATCATTTAGGCTAGATGTTACTCGTCGTTCGTGGGAGAAGTTTCATGATAGCTTGGTTTCTAGAAATATGAAATCTTTCAATAGTTGGATTGCTACATACCAACTCATGGATATCCCCTTGCAAAATGGATGCTTCACTTGGTCTAGTTTTGGTGAATCGAATTATCTCTCTCGGTTGGATCGATTTTTAGTCACTGCTACATGTCTTAAAACAATTGGCTCTCCTCTCCTGCGTAGAATGGATCGACTGACTTCTGATCATTATCCATTGGTTATTCTTGGAGACATTTCTTGGGGTCCTCTTTTTGGTTTGAAAATACTTGGTAACAGGAAAGTACATTTGACAATTTGGTCGAGAGTTGGTGGTCTCAAAATCTTTTGCAAGGCTGGTCGGGATTTGGTTTCATGA

mRNA sequence

ATGTACCTTTCCAATTGGATGATAGATAAAGATCTTTACTCGGCCCTTGAAGACAGTGATTGGGAAAAGGATTTCGATGTGAAGTTTCCATCTTTCTCTAAATTCTACCACCAAGAATCAAAGGATTCATTTAGAATTACCGCCTCAAGAGCATGTGATAGGCTGGCCCATTCCTATGTCTCTAGATCTGTAAGGTTCCTCCTAGGGCTGAAATTCCAAGATGCCATCCACAAATCAGCCTCCGTGCTTACTAGCATAGAAGAAGGGAAATCTATTATTAAGGGCTCATTACCCAGCCACATATCTGACCCGAGGAAATCATTTAGGCTAGATGTTACTCGTCGTTCGTGGGAGAAGTTTCATGATAGCTTGGTTTCTAGAAATATGAAATCTTTCAATAGTTGGATTGCTACATACCAACTCATGGATATCCCCTTGCAAAATGGATGCTTCACTTGGTCTAGTTTTGGTGAATCGAATTATCTCTCTCGGTTGGATCGATTTTTAGTCACTGCTACATGTCTTAAAACAATTGGCTCTCCTCTCCTGCGTAGAATGGATCGACTGACTTCTGATCATTATCCATTGGTTATTCTTGGAGACATTTCTTGGGGTCCTCTTTTTGGTTTGAAAATACTTGGTAACAGGAAAGTACATTTGACAATTTGGTCGAGAGTTGGTGGTCTCAAAATCTTTTGCAAGGCTGGTCGGGATTTGGTTTCATGA

Coding sequence (CDS)

ATGTACCTTTCCAATTGGATGATAGATAAAGATCTTTACTCGGCCCTTGAAGACAGTGATTGGGAAAAGGATTTCGATGTGAAGTTTCCATCTTTCTCTAAATTCTACCACCAAGAATCAAAGGATTCATTTAGAATTACCGCCTCAAGAGCATGTGATAGGCTGGCCCATTCCTATGTCTCTAGATCTGTAAGGTTCCTCCTAGGGCTGAAATTCCAAGATGCCATCCACAAATCAGCCTCCGTGCTTACTAGCATAGAAGAAGGGAAATCTATTATTAAGGGCTCATTACCCAGCCACATATCTGACCCGAGGAAATCATTTAGGCTAGATGTTACTCGTCGTTCGTGGGAGAAGTTTCATGATAGCTTGGTTTCTAGAAATATGAAATCTTTCAATAGTTGGATTGCTACATACCAACTCATGGATATCCCCTTGCAAAATGGATGCTTCACTTGGTCTAGTTTTGGTGAATCGAATTATCTCTCTCGGTTGGATCGATTTTTAGTCACTGCTACATGTCTTAAAACAATTGGCTCTCCTCTCCTGCGTAGAATGGATCGACTGACTTCTGATCATTATCCATTGGTTATTCTTGGAGACATTTCTTGGGGTCCTCTTTTTGGTTTGAAAATACTTGGTAACAGGAAAGTACATTTGACAATTTGGTCGAGAGTTGGTGGTCTCAAAATCTTTTGCAAGGCTGGTCGGGATTTGGTTTCATGA

Protein sequence

MYLSNWMIDKDLYSALEDSDWEKDFDVKFPSFSKFYHQESKDSFRITASRACDRLAHSYVSRSVRFLLGLKFQDAIHKSASVLTSIEEGKSIIKGSLPSHISDPRKSFRLDVTRRSWEKFHDSLVSRNMKSFNSWIATYQLMDIPLQNGCFTWSSFGESNYLSRLDRFLVTATCLKTIGSPLLRRMDRLTSDHYPLVILGDISWGPLFGLKILGNRKVHLTIWSRVGGLKIFCKAGRDLVS

Homology

[Close]

BLAST of Lag0028185 vs. NCBI nr
Match: XP_022158956.1 (uncharacterized protein LOC111025405 [Momordica charantia])

HSP 1 Score: 82.4 bits (202), Expect = 5.8e-12
Identity = 40/96 (41.67%), Postives = 61/96 (63.54%), Query Frame = 0


Query: 111 DVTRRSWEKFHDSLVSRNMKSFNSWIATYQLMDIPLQNGCFTWSSFGESNYLSRLDRFLV 170
           +VTR SWEK +   ++++M  FNS+I    L+D+PL NG  TWS    +   S +D FL+
Sbjct: 142 NVTRWSWEKSNGRPLTKSMWLFNSFIEDSSLIDVPLTNGQHTWS---RNTSFSLIDCFLL 201

Query: 171 TATCLKTIGSPLLRRMDRLTSDHYPLVI-LGDISWG 206
           T  C+  +G P+ +RM R TSDH+P+++  G  +WG
Sbjct: 202 TNGCIDKLGMPIAKRMTRTTSDHFPILLDFGQNNWG 234

[Close]

BLAST of Lag0028185 vs. NCBI nr
Match: RVW76061.1 (putative mitochondrial protein [Vitis vinifera])

HSP 1 Score: 80.9 bits (198), Expect = 1.7e-11
Identity = 41/98 (41.84%), Postives = 59/98 (60.20%), Query Frame = 0


Query: 111 DVTRRSWEKFHDSLVSRNMKSFNSWIATYQLMDIPLQNGCFTWSSFGESNYLSRLDRFLV 170
           +V R+S EK   S ++ +MK F+S+I   +L+D PLQN  FTWS+F ES+   RLDRFL 
Sbjct: 443 NVIRKSSEKLGGSSLTSSMKDFDSFIRECELLDPPLQNASFTWSNFQESSVCKRLDRFLY 502

Query: 171 TATCLKTIGSPLLRRMDRLTSDHYPLVI-LGDISWGPL 208
           +    +     L   + R TSDH+P+V+      WGP+
Sbjct: 503 SNEWGQLFPQGLQEALPRRTSDHWPIVLDANPFKWGPI 540

[Close]

BLAST of Lag0028185 vs. NCBI nr
Match: CAN68153.1 (hypothetical protein VITISV_009302 [Vitis vinifera])

HSP 1 Score: 78.6 bits (192), Expect = 8.4e-11
Identity = 41/97 (42.27%), Postives = 57/97 (58.76%), Query Frame = 0


Query: 111 DVTRRSWEKFHDSLVSRNMKSFNSWIATYQLMDIPLQNGCFTWSSFGESNYLSRLDRFLV 170
           +V RRS EK   S ++ +MK F+S+I   +L+D PLQN  FTWS+  ES+   RLDRFL 
Sbjct: 433 NVIRRSSEKLGGSSLTSSMKDFDSFIRECELLDPPLQNASFTWSNLQESSVCKRLDRFLY 492

Query: 171 TATCLKTIGSPLLRRMDRLTSDHYPLVI-LGDISWGP 207
           +    +     L   + R TSDH+P+V+      WGP
Sbjct: 493 SNEWGQLFPQGLQEAVPRRTSDHWPIVLDTNPFKWGP 529

[Close]

BLAST of Lag0028185 vs. NCBI nr
Match: XP_022154822.1 (uncharacterized protein LOC111021983 [Momordica charantia])

HSP 1 Score: 78.6 bits (192), Expect = 8.4e-11
Identity = 36/97 (37.11%), Postives = 59/97 (60.82%), Query Frame = 0


Query: 111 DVTRRSWEKFHDSLVSRNMKSFNSWIATYQLMDIPLQNGCFTWSSFGESNYLSRLDRFLV 170
           +V+R   +K     ++R+M+ FN  I    L ++PL NG FTWS  G  +  S LD+FL+
Sbjct: 94  NVSRWPSDKSSGGRITRSMRKFNCIIGELDLTEVPLSNGKFTWSRMGNDSIHSLLDKFLL 153

Query: 171 TATCLKTIGSPLLRRMDRLTSDHYPLVI-LGDISWGP 207
           +        +  + R++R+TSDH+P+V+ +GD +WGP
Sbjct: 154 SKEWDNLFNNSRVSRVERITSDHFPIVLDVGDCTWGP 190

[Close]

BLAST of Lag0028185 vs. NCBI nr
Match: CAN71949.1 (hypothetical protein VITISV_010315 [Vitis vinifera])

HSP 1 Score: 75.9 bits (185), Expect = 5.4e-10
Identity = 40/98 (40.82%), Postives = 55/98 (56.12%), Query Frame = 0


Query: 111 DVTRRSWEKFHDSLVSRNMKSFNSWIATYQLMDIPLQNGCFTWSSFGESNYLSRLDRFLV 170
           +V RRS EK   S ++ +MK F+S+I   +L+D PL+N  FTWS+  ES    RLDRFL 
Sbjct: 701 NVIRRSLEKLGGSSLTSSMKDFDSFIRECELLDPPLRNASFTWSNMQESPVCKRLDRFLY 760

Query: 171 TATCLKTIGSPLLRRMDRLTSDHYPLVI-LGDISWGPL 208
           +          L     R TSDH+P+V+      WGP+
Sbjct: 761 SNEWGHFFPQSLQEAFPRRTSDHWPIVLDTNPFKWGPI 798

[Close]

BLAST of Lag0028185 vs. ExPASy TrEMBL
Match: A0A6J1E2G6 (uncharacterized protein LOC111025405 OS=Momordica charantia OX=3673 GN=LOC111025405 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.8e-12
Identity = 40/96 (41.67%), Postives = 61/96 (63.54%), Query Frame = 0


Query: 111 DVTRRSWEKFHDSLVSRNMKSFNSWIATYQLMDIPLQNGCFTWSSFGESNYLSRLDRFLV 170
           +VTR SWEK +   ++++M  FNS+I    L+D+PL NG  TWS    +   S +D FL+
Sbjct: 142 NVTRWSWEKSNGRPLTKSMWLFNSFIEDSSLIDVPLTNGQHTWS---RNTSFSLIDCFLL 201

Query: 171 TATCLKTIGSPLLRRMDRLTSDHYPLVI-LGDISWG 206
           T  C+  +G P+ +RM R TSDH+P+++  G  +WG
Sbjct: 202 TNGCIDKLGMPIAKRMTRTTSDHFPILLDFGQNNWG 234

[Close]

BLAST of Lag0028185 vs. ExPASy TrEMBL
Match: A0A438GV32 (Putative mitochondrial protein OS=Vitis vinifera OX=29760 GN=AtMg01250_182 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 8.2e-12
Identity = 41/98 (41.84%), Postives = 59/98 (60.20%), Query Frame = 0


Query: 111 DVTRRSWEKFHDSLVSRNMKSFNSWIATYQLMDIPLQNGCFTWSSFGESNYLSRLDRFLV 170
           +V R+S EK   S ++ +MK F+S+I   +L+D PLQN  FTWS+F ES+   RLDRFL 
Sbjct: 443 NVIRKSSEKLGGSSLTSSMKDFDSFIRECELLDPPLQNASFTWSNFQESSVCKRLDRFLY 502

Query: 171 TATCLKTIGSPLLRRMDRLTSDHYPLVI-LGDISWGPL 208
           +    +     L   + R TSDH+P+V+      WGP+
Sbjct: 503 SNEWGQLFPQGLQEALPRRTSDHWPIVLDANPFKWGPI 540

[Close]

BLAST of Lag0028185 vs. ExPASy TrEMBL
Match: A5BNY2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_009302 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.1e-11
Identity = 41/97 (42.27%), Postives = 57/97 (58.76%), Query Frame = 0


Query: 111 DVTRRSWEKFHDSLVSRNMKSFNSWIATYQLMDIPLQNGCFTWSSFGESNYLSRLDRFLV 170
           +V RRS EK   S ++ +MK F+S+I   +L+D PLQN  FTWS+  ES+   RLDRFL 
Sbjct: 433 NVIRRSSEKLGGSSLTSSMKDFDSFIRECELLDPPLQNASFTWSNLQESSVCKRLDRFLY 492

Query: 171 TATCLKTIGSPLLRRMDRLTSDHYPLVI-LGDISWGP 207
           +    +     L   + R TSDH+P+V+      WGP
Sbjct: 493 SNEWGQLFPQGLQEAVPRRTSDHWPIVLDTNPFKWGP 529

[Close]

BLAST of Lag0028185 vs. ExPASy TrEMBL
Match: A0A6J1DMQ9 (uncharacterized protein LOC111021983 OS=Momordica charantia OX=3673 GN=LOC111021983 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.1e-11
Identity = 36/97 (37.11%), Postives = 59/97 (60.82%), Query Frame = 0


Query: 111 DVTRRSWEKFHDSLVSRNMKSFNSWIATYQLMDIPLQNGCFTWSSFGESNYLSRLDRFLV 170
           +V+R   +K     ++R+M+ FN  I    L ++PL NG FTWS  G  +  S LD+FL+
Sbjct: 94  NVSRWPSDKSSGGRITRSMRKFNCIIGELDLTEVPLSNGKFTWSRMGNDSIHSLLDKFLL 153

Query: 171 TATCLKTIGSPLLRRMDRLTSDHYPLVI-LGDISWGP 207
           +        +  + R++R+TSDH+P+V+ +GD +WGP
Sbjct: 154 SKEWDNLFNNSRVSRVERITSDHFPIVLDVGDCTWGP 190

[Close]

BLAST of Lag0028185 vs. ExPASy TrEMBL
Match: A5B2S8 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_010315 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.6e-10
Identity = 40/98 (40.82%), Postives = 55/98 (56.12%), Query Frame = 0


Query: 111 DVTRRSWEKFHDSLVSRNMKSFNSWIATYQLMDIPLQNGCFTWSSFGESNYLSRLDRFLV 170
           +V RRS EK   S ++ +MK F+S+I   +L+D PL+N  FTWS+  ES    RLDRFL 
Sbjct: 701 NVIRRSLEKLGGSSLTSSMKDFDSFIRECELLDPPLRNASFTWSNMQESPVCKRLDRFLY 760

Query: 171 TATCLKTIGSPLLRRMDRLTSDHYPLVI-LGDISWGPL 208
           +          L     R TSDH+P+V+      WGP+
Sbjct: 761 SNEWGHFFPQSLQEAFPRRTSDHWPIVLDTNPFKWGPI 798

The following BLAST results are available for this feature:

BLAST of Lag0028185 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158956.1	5.8e-12	41.67	uncharacterized protein LOC111025405 [Momordica charantia]	[more]
RVW76061.1	1.7e-11	41.84	putative mitochondrial protein [Vitis vinifera]	[more]
CAN68153.1	8.4e-11	42.27	hypothetical protein VITISV_009302 [Vitis vinifera]	[more]
XP_022154822.1	8.4e-11	37.11	uncharacterized protein LOC111021983 [Momordica charantia]	[more]
CAN71949.1	5.4e-10	40.82	hypothetical protein VITISV_010315 [Vitis vinifera]	[more]

BLAST of Lag0028185 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0028185 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E2G6	2.8e-12	41.67	uncharacterized protein LOC111025405 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A438GV32	8.2e-12	41.84	Putative mitochondrial protein OS=Vitis vinifera OX=29760 GN=AtMg01250_182 PE=4 ...	[more]
A5BNY2	4.1e-11	42.27	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_009302 PE=4 SV=1	[more]
A0A6J1DMQ9	4.1e-11	37.11	uncharacterized protein LOC111021983 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A5B2S8	2.6e-10	40.82	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_010315 PE=4 SV=1	[more]

BLAST of Lag0028185 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	GENE3D	3.60.10.10	Endonuclease/exonuclease/phosphatase	coord: 109..199 e-value: 1.9E-8 score: 36.4
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	SUPERFAMILY	56219	DNase I-like	coord: 119..198

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0028185.1	Lag0028185.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050789	regulation of biological process
cellular_component	GO:0110165	cellular anatomical entity