Lag0028178 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTCCCCACCTTTTTTCGAAATTTGCCCAAATCCTATCAAACTCAGCCAGCTTTTCCATCGTATAACCCTCACCATTTTACCCACCCTCAACTGGAGTTTTTCAACCTTATTACCCTGCCTCTTTCCCACGCCCTACACTTCCTTAATATCCAATACCGCAAGCTCTCCACCGACTGTCCCAACACCATTTGCTCCAAATCCCTACCCGTCCTTACCTCAGCCTCTGTCAGTCAAACTCACAGATACAAATTTTTTACTTTGGAAGAATCAACTCTTGAATGTTGTTTAGCTAATGGACTTCACAGTTTCTTGATGGGTCGATCCAAGCTCCTCCAAAATTTCTTGATGCTCAACAATCTCAGCCGAATCCGGATTTTCTCTCTTGGGAAAGGTATAATCGGTTTATTATGTGTTGGATGTATTCCTCGCTTTCTGAAGAAAAAATGGGTGAAATAGTGAACTAGAAACTGCCTCTAAGATTTGGGAGTCTTGAAACGTTCTTATGATTCTAAACTACTGCTAGGATAATGGGCCTTAAAACACAACTTCAACGAATTAAGAAAGATGGTCTCTCTGTCAGTCAATACTTGTCTCAAATTAAGGATATTACTGATAAGTTTTCAGCTATAGGGGAGCCCATCTCTTATCGAGATCATTTGGCTCATATCTTAGATGGTCTTGGCAGTGAGTACAATGCCTTTGTCACATCTATTAAGAATCGTGCTGATAGCCCTGCTTTAGAGGATGTTCGTAGCCTTCTTCTTGCTTATGAGGCTCGTTTAGAAAGCAAAACAGTGTTGAACAACTTAACTTAG ATGCTCCCCACCTTTTTTCGAAATTTGCCCAAATCCTATCAAACTCAGCCAGCTTTTCCATCGTATAACCCTCACCATTTTACCCACCCTCAACTGGAGTTTTTCAACCTTATTACCCTGCCTCTTTCCCACGCCCTACACTTCCTTAATATCCAATACCGCAAGCTCTCCACCGACTGTCCCAACACCATTTGCTCCAAATCCCTACCCGTCCTTACCTCAGCCTCTTTTCTTGATGGGTCGATCCAAGCTCCTCCAAAATTTCTTGATGCTCAACAATCTCAGCCGAATCCGGATTTTCTCTCTTGGGAAAGGATAATGGGCCTTAAAACACAACTTCAACGAATTAAGAAAGATGGTCTCTCTGTCAGTCAATACTTGTCTCAAATTAAGGATATTACTGATAAGTTTTCAGCTATAGGGGAGCCCATCTCTTATCGAGATCATTTGGCTCATATCTTAGATGGTCTTGGCAGTGAGTACAATGCCTTTGTCACATCTATTAAGAATCGTGCTGATAGCCCTGCTTTAGAGGATGTTCGTAGCCTTCTTCTTGCTTATGAGGCTCGTTTAGAAAGCAAAACAGTGTTGAACAACTTAACTTAG ATGCTCCCCACCTTTTTTCGAAATTTGCCCAAATCCTATCAAACTCAGCCAGCTTTTCCATCGTATAACCCTCACCATTTTACCCACCCTCAACTGGAGTTTTTCAACCTTATTACCCTGCCTCTTTCCCACGCCCTACACTTCCTTAATATCCAATACCGCAAGCTCTCCACCGACTGTCCCAACACCATTTGCTCCAAATCCCTACCCGTCCTTACCTCAGCCTCTTTTCTTGATGGGTCGATCCAAGCTCCTCCAAAATTTCTTGATGCTCAACAATCTCAGCCGAATCCGGATTTTCTCTCTTGGGAAAGGATAATGGGCCTTAAAACACAACTTCAACGAATTAAGAAAGATGGTCTCTCTGTCAGTCAATACTTGTCTCAAATTAAGGATATTACTGATAAGTTTTCAGCTATAGGGGAGCCCATCTCTTATCGAGATCATTTGGCTCATATCTTAGATGGTCTTGGCAGTGAGTACAATGCCTTTGTCACATCTATTAAGAATCGTGCTGATAGCCCTGCTTTAGAGGATGTTCGTAGCCTTCTTCTTGCTTATGAGGCTCGTTTAGAAAGCAAAACAGTGTTGAACAACTTAACTTAG MLPTFFRNLPKSYQTQPAFPSYNPHHFTHPQLEFFNLITLPLSHALHFLNIQYRKLSTDCPNTICSKSLPVLTSASFLDGSIQAPPKFLDAQQSQPNPDFLSWERIMGLKTQLQRIKKDGLSVSQYLSQIKDITDKFSAIGEPISYRDHLAHILDGLGSEYNAFVTSIKNRADSPALEDVRSLLLAYEARLESKTVLNNLT Homology
BLAST of Lag0028178 vs. NCBI nr
Match: XP_022155181.1 (uncharacterized protein LOC111022315 [Momordica charantia]) HSP 1 Score: 168.7 bits (426), Expect = 5.1e-38 Identity = 102/231 (44.16%), Postives = 128/231 (55.41%), Query Frame = 0
BLAST of Lag0028178 vs. NCBI nr
Match: XP_038891713.1 (uncharacterized protein LOC120081111 [Benincasa hispida]) HSP 1 Score: 133.7 bits (335), Expect = 1.8e-27 Identity = 64/94 (68.09%), Postives = 80/94 (85.11%), Query Frame = 0
BLAST of Lag0028178 vs. NCBI nr
Match: XP_038887133.1 (uncharacterized protein LOC120077323 [Benincasa hispida]) HSP 1 Score: 132.1 bits (331), Expect = 5.3e-27 Identity = 61/95 (64.21%), Postives = 82/95 (86.32%), Query Frame = 0
BLAST of Lag0028178 vs. NCBI nr
Match: CAN77126.1 (hypothetical protein VITISV_013628 [Vitis vinifera]) HSP 1 Score: 119.8 bits (299), Expect = 2.7e-23 Identity = 64/157 (40.76%), Postives = 93/157 (59.24%), Query Frame = 0
BLAST of Lag0028178 vs. NCBI nr
Match: XP_022148871.1 (uncharacterized protein LOC111017438 [Momordica charantia]) HSP 1 Score: 119.4 bits (298), Expect = 3.6e-23 Identity = 56/89 (62.92%), Postives = 77/89 (86.52%), Query Frame = 0
BLAST of Lag0028178 vs. ExPASy TrEMBL
Match: A0A6J1DQX7 (uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022315 PE=4 SV=1) HSP 1 Score: 168.7 bits (426), Expect = 2.5e-38 Identity = 102/231 (44.16%), Postives = 128/231 (55.41%), Query Frame = 0
BLAST of Lag0028178 vs. ExPASy TrEMBL
Match: A5BPS3 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_013628 PE=4 SV=1) HSP 1 Score: 119.8 bits (299), Expect = 1.3e-23 Identity = 64/157 (40.76%), Postives = 93/157 (59.24%), Query Frame = 0
BLAST of Lag0028178 vs. ExPASy TrEMBL
Match: A0A6J1D6N7 (uncharacterized protein LOC111017438 OS=Momordica charantia OX=3673 GN=LOC111017438 PE=4 SV=1) HSP 1 Score: 119.4 bits (298), Expect = 1.7e-23 Identity = 56/89 (62.92%), Postives = 77/89 (86.52%), Query Frame = 0
BLAST of Lag0028178 vs. ExPASy TrEMBL
Match: A0A5C7IHH0 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_003685 PE=4 SV=1) HSP 1 Score: 117.1 bits (292), Expect = 8.6e-23 Identity = 52/87 (59.77%), Postives = 73/87 (83.91%), Query Frame = 0
BLAST of Lag0028178 vs. ExPASy TrEMBL
Match: A0A438GC62 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_210 PE=4 SV=1) HSP 1 Score: 114.8 bits (286), Expect = 4.3e-22 Identity = 82/241 (34.02%), Postives = 117/241 (48.55%), Query Frame = 0
BLAST of Lag0028178 vs. TAIR 10
Match: AT5G48050.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 60.1 bits (144), Expect = 2.4e-09 Identity = 29/91 (31.87%), Postives = 55/91 (60.44%), Query Frame = 0
BLAST of Lag0028178 vs. TAIR 10
Match: AT1G34070.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 44.3 bits (103), Expect = 1.4e-04 Identity = 21/88 (23.86%), Postives = 48/88 (54.55%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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