Lag0028155 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0028155
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase
Locationchr8: 14666216 .. 14666981 (+)
RNA-Seq ExpressionLag0028155
SyntenyLag0028155
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGAGCAGTGGATGGATAATATTGAAATGGATTAAAGGTTATGGGGTGCCCAGAAGACAAGAAGGTATCATTAGCTACGTATCTCCTACAAGAGCAGCTCGAGATTGGTGGAGGTCAATCTTGAGTAGACGATCAGACACTGAAGGAATGGCTTGGCAAGAGTTTAAGAGGGTCTTTTTCGAAAATACTACCCACGATCTTTTCAGGATGCAAACGCAATGAATTTCTGAGACTTGAGCAGGGATCGATGACAGTGGCTGATATGAGCATAAGTATCTTGAGTTATCCAAGTACGCTACAAATGTGATCAGTGATGAGATCGATAGATGCAAGCAGTTTGAAGACGGTCTTCGAGGTGAAATTCGAACTCATGTTACTGCCAGCATAGAAAGGAAGGAGTTTGGAACATTGGTGGAACTTGCCATGAGGGTAGAAAAAGTCTGATAGACGCGAGAACTCAAAGTGAAGCTTCTATGAGTGCACGAGGTTCAGGGGACAGATCATATAAAGGTGGCAACAAGAGTTTTGTACCAGGAGTCAGGGGCATGGAAGTTTTAAACCGAGGCATCGTGGTTCAGCGAGAACAGATTCCAGTTTCAGCCAGTCTGCTAGTAGTGGATCGGGCCGTCTTCGCGATCCTCTAGCGGTCAGCAAGCATCACAGTCAGGGGAACCAGCATCCAGCCAAAGCAGGGCGTAGCTGGTCAAAATTGTGGCAAGCATCATCAGGGGCAGTGTCTATGGGGAACCCGAGTTTGTTATAA

mRNA sequence

ATGCAGAGCAGTGGATGGATAATATTGAAATGGATTAAAGGTTATGGGGTGCCCAGAAGACAAGAAGGTATCATTAGCTACGTATCTCCTACAAGAGCAGCTCGAGATTGGTGGAGGTCAATCTTGAGTAGACGATCAGACACTGAAGGAATGGCTTGGCAAGAGTTTAAGAGGTACGCTACAAATGTGATCAGTGATGAGATCGATAGATGCAAGCAGTTTGAAGACGGTCTTCGAGGTGAAATTCGAACTCATGTTACTGCCAGCATAGAAAGGAAGGAGTTTGGAACATTGGTGGAACTTGCCATGAGGGGGCATGGAAGTTTTAAACCGAGGCATCGTGGTTCAGCGAGAACAGATTCCAGTTTCAGCCAGTCTGCTAGTAGTGGATCGGGCCGTCTTCGCGATCCTCTAGCGGTCAGCAAGCATCACAGTCAGGGGAACCAGCATCCAGCCAAAGCAGGGCGTAGCTGGTCAAAATTGTGGCAAGCATCATCAGGGGCAGTGTCTATGGGGAACCCGAGTTTGTTATAA

Coding sequence (CDS)

ATGCAGAGCAGTGGATGGATAATATTGAAATGGATTAAAGGTTATGGGGTGCCCAGAAGACAAGAAGGTATCATTAGCTACGTATCTCCTACAAGAGCAGCTCGAGATTGGTGGAGGTCAATCTTGAGTAGACGATCAGACACTGAAGGAATGGCTTGGCAAGAGTTTAAGAGGTACGCTACAAATGTGATCAGTGATGAGATCGATAGATGCAAGCAGTTTGAAGACGGTCTTCGAGGTGAAATTCGAACTCATGTTACTGCCAGCATAGAAAGGAAGGAGTTTGGAACATTGGTGGAACTTGCCATGAGGGGGCATGGAAGTTTTAAACCGAGGCATCGTGGTTCAGCGAGAACAGATTCCAGTTTCAGCCAGTCTGCTAGTAGTGGATCGGGCCGTCTTCGCGATCCTCTAGCGGTCAGCAAGCATCACAGTCAGGGGAACCAGCATCCAGCCAAAGCAGGGCGTAGCTGGTCAAAATTGTGGCAAGCATCATCAGGGGCAGTGTCTATGGGGAACCCGAGTTTGTTATAA

Protein sequence

MQSSGWIILKWIKGYGVPRRQEGIISYVSPTRAARDWWRSILSRRSDTEGMAWQEFKRYATNVISDEIDRCKQFEDGLRGEIRTHVTASIERKEFGTLVELAMRGHGSFKPRHRGSARTDSSFSQSASSGSGRLRDPLAVSKHHSQGNQHPAKAGRSWSKLWQASSGAVSMGNPSLL
Homology
BLAST of Lag0028155 vs. NCBI nr
Match: KAA0036813.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 6.8e-10
Identity = 54/137 (39.42%), Postives = 75/137 (54.74%), Query Frame = 0

Query: 34  ARDWWRSILSRRSDTEGMA-------WQEFKRYATNVISDEIDRCKQFEDGLRGEIRTHV 93
           A DWWR   SRR  T  M        + E  +YAT VI DE +RCK+FE+GLR EIRT V
Sbjct: 123 AEDWWRMEESRRRTTGTMTVAEYEKKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPV 182

Query: 94  TASIERKEFGTLVELAMRGHGSF--KPRHRGSARTDSSFSQSA-SSGSGRLRDPLAVSKH 153
           TA  +  +F  LVE+A+R   S   + R R +++   +FS S   +  G+ R    V + 
Sbjct: 183 TACADWNDFSKLVEVALRVEKSLNERKREREASKNLRTFSSSMHRNRPGKERSGRFVPRV 242

Query: 154 HSQGNQHPAKAGRSWSK 161
            S+G+     +G S+SK
Sbjct: 243 SSRGSFKSQYSGSSFSK 259

BLAST of Lag0028155 vs. NCBI nr
Match: KAA0035225.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 7.5e-09
Identity = 54/145 (37.24%), Postives = 71/145 (48.97%), Query Frame = 0

Query: 36  DWWRSILSRR---SDTEGMA-------WQEFKRYATNVISDEIDRCKQFEDGLRGEIRTH 95
           DWWR   SRR   SD   M        + E  +YAT VI DE++RCK+FE+GL+ EIRT 
Sbjct: 148 DWWRMEESRRRITSDIRSMTVTKYEKKYTELSKYATRVIEDEVERCKRFEEGLQEEIRTP 207

Query: 96  VTASIERKEFGTLVELAMRGHGSFKPRHR-----GSARTDSSFSQSASSGSGRLRDPLAV 155
           VT   +  +F  LVE A+R   S   R R      + RT SS       G G  R   + 
Sbjct: 208 VTTCADWNDFSKLVEAALRVEKSLNERKRERETSKNVRTFSSSMHRNRQGEGAQRSSGSS 267

Query: 156 SKHHSQGNQHPAKAGRSWSKLWQAS 166
               S G  + A++ R  SK  ++S
Sbjct: 268 HPISSIGGSYIAQSDRVVSKSGKSS 292

BLAST of Lag0028155 vs. NCBI nr
Match: TYK27278.1 (uncharacterized protein E5676_scaffold244G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 8.3e-08
Identity = 34/89 (38.20%), Postives = 55/89 (61.80%), Query Frame = 0

Query: 19  RRQEGIISYVSPTRAARDWWRSILSRRSDTEG---MAWQEFKRYATNVISDEIDRCKQFE 78
           +R++G+ +++   + A  WW+S+L+RR+D  G     + E  RYA  +++ + DRC++FE
Sbjct: 105 KRKDGLATFLL-QKDAEGWWKSLLARRNDPLGKYERKYAELSRYADVIVASKSDRCRRFE 164

Query: 79  DGLRGEIRTHVTASIERKEFGTLVELAMR 105
            GLR EIRT VT   +   F  LVE  +R
Sbjct: 165 RGLRFEIRTSVTVIAKWTNFSQLVETTLR 192

BLAST of Lag0028155 vs. NCBI nr
Match: KAA0026280.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21476.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 8.3e-08
Identity = 56/162 (34.57%), Postives = 75/162 (46.30%), Query Frame = 0

Query: 34  ARDWWRSILSRRSDTEGMAWQEFKR--------------YATNVISDEIDRCKQFEDGLR 93
           A DWW    SRR  T  M W EFK+                  VI D+++RCK+FE+GLR
Sbjct: 123 AEDWWHMEESRRRTTGDMIWGEFKKAFFDKFYPPSFHDAKHNKVIEDKVERCKRFEEGLR 182

Query: 94  GEIRTHVTASIERKEFGTLVELAMRGHGSF--KPRHRGSARTDSSFSQSA-SSGSGRLRD 153
            EIRT VTA  +  +F  LV  A+R   S   + R R +++   +FS S   +  G+ R 
Sbjct: 183 EEIRTPVTACADWNDFSKLVNAALRVQKSLNERKRERETSKNVHTFSLSMHRNRQGKGRS 242

Query: 154 PLAVSKHHSQGNQHPAKAGRSWSK--------LWQASSGAVS 171
              V    S+GN      G S+SK         W  SS  +S
Sbjct: 243 GRFVPGVSSRGNFKSQYNGSSFSKSRSGGGAQRWSGSSHPIS 284

BLAST of Lag0028155 vs. NCBI nr
Match: XP_038896366.1 (uncharacterized protein LOC120084630 [Benincasa hispida])

HSP 1 Score: 66.6 bits (161), Expect = 2.4e-07
Identity = 45/159 (28.30%), Postives = 70/159 (44.03%), Query Frame = 0

Query: 8   ILKWIKGYGVPRRQEGIISYVSPTRAARDWWRSILSRRSDTEGMAWQEFK---------- 67
           I K+ +    P+ ++  ++     + A DWW+ + +RR + E + W+EF+          
Sbjct: 85  IEKYFEVMRCPKNRKVSLATFLLQKQAEDWWKLLKNRRGNQEEICWEEFRKAFFERFYPR 144

Query: 68  -------------------------------RYATNVISDEIDRCKQFEDGLRGEIRTHV 126
                                          +YA N++ DE +RC++FE GLR EIRT V
Sbjct: 145 SFRDRKQDEFLQLMQGNMTIVEYELKYTKLSKYALNIVVDEKERCRRFETGLRQEIRTPV 204

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0036813.16.8e-1039.42DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0035225.17.5e-0937.24DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 D... [more]
TYK27278.18.3e-0838.20uncharacterized protein E5676_scaffold244G00450 [Cucumis melo var. makuwa][more]
KAA0026280.18.3e-0834.57DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21476.1 D... [more]
XP_038896366.12.4e-0728.30uncharacterized protein LOC120084630 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 142..159
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 118..132
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 106..159

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0028155.1Lag0028155.1mRNA