Lag0027955 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0027955
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Girdin-like
Location	chr8: 8692863 .. 8693201 (-)
RNA-Seq Expression	Lag0027955
Synteny	Lag0027955

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCAGGTAACTCAAGCTAATGGAAAACTCGAAGAAGTAGAGAGGGTGTCAAAAAAACGAGCTAAGCGAGAAAAAGAGTATGACATACTAGACGAGGAGAATAGAAGGTTGATTAAAGAGAATCATGCTCTGAGGAATGAGAATACTGCAGAACGAAGAGCAACTCGTTCACAAGAGGACAGGATCAAAGACCTTTCAAGAGGCAAAGAGAATCTCTTAGAGTTAGTTGCGGAATTAAACGAGACCATCAACAAGCAGAAAACGCAACTTATCGAGTTTGAAGAAGCCGATGCTGCTCTACGACGAATGCTGGACAATCTACGTGTGAATATGTAG

mRNA sequence

ATGGACCAGGTAACTCAAGCTAATGGAAAACTCGAAGAAGTAGAGAGGGTGTCAAAAAAACGAGCTAAGCGAGAAAAAGAGTATGACATACTAGACGAGGAGAATAGAAGGTTGATTAAAGAGAATCATGCTCTGAGGAATGAGAATACTGCAGAACGAAGAGCAACTCGTTCACAAGAGGACAGGATCAAAGACCTTTCAAGAGGCAAAGAGAATCTCTTAGAGTTAGTTGCGGAATTAAACGAGACCATCAACAAGCAGAAAACGCAACTTATCGAGTTTGAAGAAGCCGATGCTGCTCTACGACGAATGCTGGACAATCTACGTGTGAATATGTAG

Coding sequence (CDS)

ATGGACCAGGTAACTCAAGCTAATGGAAAACTCGAAGAAGTAGAGAGGGTGTCAAAAAAACGAGCTAAGCGAGAAAAAGAGTATGACATACTAGACGAGGAGAATAGAAGGTTGATTAAAGAGAATCATGCTCTGAGGAATGAGAATACTGCAGAACGAAGAGCAACTCGTTCACAAGAGGACAGGATCAAAGACCTTTCAAGAGGCAAAGAGAATCTCTTAGAGTTAGTTGCGGAATTAAACGAGACCATCAACAAGCAGAAAACGCAACTTATCGAGTTTGAAGAAGCCGATGCTGCTCTACGACGAATGCTGGACAATCTACGTGTGAATATGTAG

Protein sequence

MDQVTQANGKLEEVERVSKKRAKREKEYDILDEENRRLIKENHALRNENTAERRATRSQEDRIKDLSRGKENLLELVAELNETINKQKTQLIEFEEADAALRRMLDNLRVNM

Homology

[Close]

BLAST of Lag0027955 vs. NCBI nr
Match: KAA0036949.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 1.6e-09
Identity = 44/112 (39.29%), Postives = 71/112 (63.39%), Query Frame = 0


Query: 1   MDQVTQANGKLEEVERVSKKRAKREKEYDILDEENRRLIKENHALRNENTAERRATRSQE 60
           MD  T    KLE+ +   K + K EK+ + LD+E RR+ K N +L+NE T  +    SQ+
Sbjct: 387 MDHATYLQNKLEKTKSFLKNQDKLEKDLETLDKEMRRMNKANRSLKNEKTTFQATMGSQD 446

Query: 61  DRIKDLSRGKENLLELVAELNETINKQKTQLIEFEEADAALRRMLDNLRVNM 113
           + IKDL  GKE  L+LV +LN +I K++T++++ E  + +LR+ +D+L + M
Sbjct: 447 EYIKDLENGKEYFLKLVNDLNTSIRKRETKIMDLEAQNHSLRQTVDSLHLKM 498

[Close]

BLAST of Lag0027955 vs. NCBI nr
Match: KAA0060422.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 2.1e-09
Identity = 44/112 (39.29%), Postives = 70/112 (62.50%), Query Frame = 0


Query: 1   MDQVTQANGKLEEVERVSKKRAKREKEYDILDEENRRLIKENHALRNENTAERRATRSQE 60
           MD  T    +LE+ +   K + K EK+ + LD+E RR+ K N +L+NE T  +    SQ+
Sbjct: 1   MDHATYLQNELEKTKSFLKNQDKLEKDLETLDKEMRRMDKANRSLKNEKTTLQATVGSQD 60

Query: 61  DRIKDLSRGKENLLELVAELNETINKQKTQLIEFEEADAALRRMLDNLRVNM 113
           + IKDL  GKE  LE V +LN +I K++TQ+++ E  + +LR+ +D+L + M
Sbjct: 61  EYIKDLENGKEYFLERVNDLNTSIGKRETQIMDLEAQNHSLRQTVDSLHLKM 112

[Close]

BLAST of Lag0027955 vs. NCBI nr
Match: KAA0066094.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 2.8e-09
Identity = 44/112 (39.29%), Postives = 70/112 (62.50%), Query Frame = 0


Query: 1   MDQVTQANGKLEEVERVSKKRAKREKEYDILDEENRRLIKENHALRNENTAERRATRSQE 60
           MD  T    +LE+ +   K + K EK+ + LD+E RR+ K N +L+NE T  +    SQ+
Sbjct: 364 MDHATYLQNELEKTKSFLKNQDKLEKDLETLDKEMRRMNKANRSLKNEKTTLQATMGSQD 423

Query: 61  DRIKDLSRGKENLLELVAELNETINKQKTQLIEFEEADAALRRMLDNLRVNM 113
           + IKDL  GKE  LE V +LN +I K++TQ+++ E  + +LR+ +D+L + M
Sbjct: 424 EYIKDLENGKEYFLERVNDLNTSIGKRETQIMDLEAQNHSLRQTVDSLHLKM 475

[Close]

BLAST of Lag0027955 vs. NCBI nr
Match: TYK23632.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 8.1e-09
Identity = 43/112 (38.39%), Postives = 69/112 (61.61%), Query Frame = 0


Query: 1   MDQVTQANGKLEEVERVSKKRAKREKEYDILDEENRRLIKENHALRNENTAERRATRSQE 60
           +D  T    +LE+ +   K + K EK+ + LD+E RR+ K N  L+NE T  +    SQ+
Sbjct: 95  IDHATYLQNELEKTKSFLKNQDKLEKDIETLDKEMRRMNKANRRLKNEKTTLQATVGSQD 154

Query: 61  DRIKDLSRGKENLLELVAELNETINKQKTQLIEFEEADAALRRMLDNLRVNM 113
           + IKDL  GKE  LELV +LN +I K++TQ+++ E  + +L + +D+L + M
Sbjct: 155 EYIKDLENGKEYFLELVNDLNTSIGKRETQIMDLEAQNHSLHQTVDSLHLKM 206

[Close]

BLAST of Lag0027955 vs. NCBI nr
Match: KAA0062685.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-08
Identity = 43/112 (38.39%), Postives = 69/112 (61.61%), Query Frame = 0


Query: 1   MDQVTQANGKLEEVERVSKKRAKREKEYDILDEENRRLIKENHALRNENTAERRATRSQE 60
           MD  T    +L++ +   K + K EK+ + LD+E RR+ K N +L+NE T  +    SQ 
Sbjct: 118 MDHATYLQNELKKTKSFLKNQDKLEKDLETLDKEMRRMNKANRSLKNEKTTLQATVGSQN 177

Query: 61  DRIKDLSRGKENLLELVAELNETINKQKTQLIEFEEADAALRRMLDNLRVNM 113
           + IKDL  GKE  LE V +LN +I K++TQ+++ E  + +LR+ +D+L + M
Sbjct: 178 EYIKDLENGKEYFLERVNDLNTSIGKRETQIMDLEAQNHSLRQTVDSLHLKM 229

The following BLAST results are available for this feature:

BLAST of Lag0027955 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036949.1	1.6e-09	39.29	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0060422.1	2.1e-09	39.29	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0066094.1	2.8e-09	39.29	girdin-like [Cucumis melo var. makuwa]	[more]
TYK23632.1	8.1e-09	38.39	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0062685.1	1.1e-08	38.39	girdin-like [Cucumis melo var. makuwa]	[more]

BLAST of Lag0027955 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 63..97
None	No IPR available	COILS	Coil	Coil	coord: 14..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	SUPERFAMILY	90257	Myosin rod fragments	coord: 11..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0027955.1	Lag0027955.1	mRNA