Lag0027230 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0027230
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionLaccase
Locationchr10: 46006410 .. 46007048 (+)
RNA-Seq ExpressionLag0027230
SyntenyLag0027230
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCACAACCGCTCTTCTACAAGCACATTTCTTCAAAATCAATGGCGTTTTCACCACAGATTTTCCAGGAAACCCCCCTCACAAATTCAACTACACAGGCCCCGGACCTAAAAATTTGCAGACGACAAGTGGAACCAAGGTCTACAAATTACAATACAACTCCACAGTGGAATTAGTTCTACAAGATACAGGAATCATAACCCCAGAAAACCATCCCATTCATCTCCACGGATTCAATTTCTTCGAAGTCGGGCGAGGAATCGGCAATTTCAACCCTAAAACAGACCCCAAGAAATTCAATCTCGTGGATCCGGTGGAGAGAAACACAATCGGAGTTCCATCCGGTGGATGGACGGCGATAAGGTTTCGTGCGGACAATCCAGGTAAAAGAATTCGAATCATCTTTCGATTTCTCGATCAAATCTTAAACTATCGAACTGAATTTAAACGATTGAATTGAAAACGAAACTGAAATTGAAGGGTTTTGATTTCGTTTCACCTTGCAGGAGTTTGGTTTATGCATTGCCATTTGGAAATTCATACGACTTGGGGATTGAAGATGGCGTTCTTGGTGGAAAATGGCAAAGGCCCCAAACAGTCGCTGCTACCGCCGCCGAGCGACCTCCCAAAATGTTAA

mRNA sequence

ATGCCCACAACCGCTCTTCTACAAGCACATTTCTTCAAAATCAATGGCGTTTTCACCACAGATTTTCCAGGAAACCCCCCTCACAAATTCAACTACACAGGCCCCGGACCTAAAAATTTGCAGACGACAAGTGGAACCAAGGTCTACAAATTACAATACAACTCCACAGTGGAATTAGTTCTACAAGATACAGGAATCATAACCCCAGAAAACCATCCCATTCATCTCCACGGATTCAATTTCTTCGAAGTCGGGCGAGGAATCGGCAATTTCAACCCTAAAACAGACCCCAAGAAATTCAATCTCGTGGATCCGGTGGAGAGAAACACAATCGGAGTTCCATCCGGTGGATGGACGGCGATAAGGTTTCGTGCGGACAATCCAGGAGTTTGGTTTATGCATTGCCATTTGGAAATTCATACGACTTGGGGATTGAAGATGGCGTTCTTGGTGGAAAATGGCAAAGGCCCCAAACAGTCGCTGCTACCGCCGCCGAGCGACCTCCCAAAATGTTAA

Coding sequence (CDS)

ATGCCCACAACCGCTCTTCTACAAGCACATTTCTTCAAAATCAATGGCGTTTTCACCACAGATTTTCCAGGAAACCCCCCTCACAAATTCAACTACACAGGCCCCGGACCTAAAAATTTGCAGACGACAAGTGGAACCAAGGTCTACAAATTACAATACAACTCCACAGTGGAATTAGTTCTACAAGATACAGGAATCATAACCCCAGAAAACCATCCCATTCATCTCCACGGATTCAATTTCTTCGAAGTCGGGCGAGGAATCGGCAATTTCAACCCTAAAACAGACCCCAAGAAATTCAATCTCGTGGATCCGGTGGAGAGAAACACAATCGGAGTTCCATCCGGTGGATGGACGGCGATAAGGTTTCGTGCGGACAATCCAGGAGTTTGGTTTATGCATTGCCATTTGGAAATTCATACGACTTGGGGATTGAAGATGGCGTTCTTGGTGGAAAATGGCAAAGGCCCCAAACAGTCGCTGCTACCGCCGCCGAGCGACCTCCCAAAATGTTAA

Protein sequence

MPTTALLQAHFFKINGVFTTDFPGNPPHKFNYTGPGPKNLQTTSGTKVYKLQYNSTVELVLQDTGIITPENHPIHLHGFNFFEVGRGIGNFNPKTDPKKFNLVDPVERNTIGVPSGGWTAIRFRADNPGVWFMHCHLEIHTTWGLKMAFLVENGKGPKQSLLPPPSDLPKC
Homology
BLAST of Lag0027230 vs. NCBI nr
Match: XP_038904173.1 (laccase-4-like [Benincasa hispida])

HSP 1 Score: 370.2 bits (949), Expect = 9.9e-99
Identity = 167/171 (97.66%), Postives = 169/171 (98.83%), Query Frame = 0

Query: 1   MPTTALLQAHFFKINGVFTTDFPGNPPHKFNYTGPGPKNLQTTSGTKVYKLQYNSTVELV 60
           MPTTALLQAHFFK  GVFTTDFPGNPPHKFNY+GPGPKNLQTTSGTK+YKLQYNSTVELV
Sbjct: 416 MPTTALLQAHFFKTKGVFTTDFPGNPPHKFNYSGPGPKNLQTTSGTKLYKLQYNSTVELV 475

Query: 61  LQDTGIITPENHPIHLHGFNFFEVGRGIGNFNPKTDPKKFNLVDPVERNTIGVPSGGWTA 120
           LQDTGIITPENHPIHLHGFNFFEVGRGIGNFNPKTDPKKFNLVDPVERNTIGVPSGGWTA
Sbjct: 476 LQDTGIITPENHPIHLHGFNFFEVGRGIGNFNPKTDPKKFNLVDPVERNTIGVPSGGWTA 535

Query: 121 IRFRADNPGVWFMHCHLEIHTTWGLKMAFLVENGKGPKQSLLPPPSDLPKC 172
           IRFRADNPGVWFMHCHLEIHTTWGLKMAFLVENGKGPKQSLLPPPSDLPKC
Sbjct: 536 IRFRADNPGVWFMHCHLEIHTTWGLKMAFLVENGKGPKQSLLPPPSDLPKC 586

BLAST of Lag0027230 vs. NCBI nr
Match: XP_023539306.1 (laccase-4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 368.6 bits (945), Expect = 2.9e-98
Identity = 164/171 (95.91%), Postives = 169/171 (98.83%), Query Frame = 0

Query: 1   MPTTALLQAHFFKINGVFTTDFPGNPPHKFNYTGPGPKNLQTTSGTKVYKLQYNSTVELV 60
           MPTTALLQAHFFKINGVFTTDFPG PPHKFNYTGPGPKNLQTTSGTK+YKL+YNSTVELV
Sbjct: 387 MPTTALLQAHFFKINGVFTTDFPGKPPHKFNYTGPGPKNLQTTSGTKLYKLKYNSTVELV 446

Query: 61  LQDTGIITPENHPIHLHGFNFFEVGRGIGNFNPKTDPKKFNLVDPVERNTIGVPSGGWTA 120
           LQDTGI+TPENHPIHLHGFNFFEVGRG+GNFNPKTDPKKFNLVDPVERNTIGVPSGGWTA
Sbjct: 447 LQDTGIVTPENHPIHLHGFNFFEVGRGVGNFNPKTDPKKFNLVDPVERNTIGVPSGGWTA 506

Query: 121 IRFRADNPGVWFMHCHLEIHTTWGLKMAFLVENGKGPKQSLLPPPSDLPKC 172
           IRFRADNPGVWFMHCHLEIHTTWGLKMAF+VENGKGPK SLLPPPSDLPKC
Sbjct: 507 IRFRADNPGVWFMHCHLEIHTTWGLKMAFMVENGKGPKHSLLPPPSDLPKC 557

BLAST of Lag0027230 vs. NCBI nr
Match: XP_022937901.1 (laccase-4-like [Cucurbita moschata])

HSP 1 Score: 367.9 bits (943), Expect = 4.9e-98
Identity = 164/171 (95.91%), Postives = 169/171 (98.83%), Query Frame = 0

Query: 1   MPTTALLQAHFFKINGVFTTDFPGNPPHKFNYTGPGPKNLQTTSGTKVYKLQYNSTVELV 60
           MPTTALLQAHFFKINGVFTTDFPG PPHKFNYTGPGPKNLQTTSGTK+YKL+YNSTVELV
Sbjct: 407 MPTTALLQAHFFKINGVFTTDFPGKPPHKFNYTGPGPKNLQTTSGTKLYKLKYNSTVELV 466

Query: 61  LQDTGIITPENHPIHLHGFNFFEVGRGIGNFNPKTDPKKFNLVDPVERNTIGVPSGGWTA 120
           LQDTGI+TPENHPIHLHGFNFFEVGRG+GNFNPKTDPKKFNLVDPVERNTIGVPSGGWTA
Sbjct: 467 LQDTGIVTPENHPIHLHGFNFFEVGRGVGNFNPKTDPKKFNLVDPVERNTIGVPSGGWTA 526

Query: 121 IRFRADNPGVWFMHCHLEIHTTWGLKMAFLVENGKGPKQSLLPPPSDLPKC 172
           IRFRADNPGVWFMHCHLEIHTTWGLKMAF+VENGKGPKQSL PPPSDLPKC
Sbjct: 527 IRFRADNPGVWFMHCHLEIHTTWGLKMAFMVENGKGPKQSLPPPPSDLPKC 577

BLAST of Lag0027230 vs. NCBI nr
Match: XP_022971405.1 (laccase-4-like [Cucurbita maxima])

HSP 1 Score: 367.5 bits (942), Expect = 6.4e-98
Identity = 164/171 (95.91%), Postives = 169/171 (98.83%), Query Frame = 0

Query: 1   MPTTALLQAHFFKINGVFTTDFPGNPPHKFNYTGPGPKNLQTTSGTKVYKLQYNSTVELV 60
           MPTTALLQAHFFKINGVFTTDFPG PPHKFNYTG GPKNLQTTSGTK+YKL+YNSTVELV
Sbjct: 427 MPTTALLQAHFFKINGVFTTDFPGKPPHKFNYTGAGPKNLQTTSGTKLYKLKYNSTVELV 486

Query: 61  LQDTGIITPENHPIHLHGFNFFEVGRGIGNFNPKTDPKKFNLVDPVERNTIGVPSGGWTA 120
           LQDTGI+TPENHPIHLHGFNFFEVGRG+GNFNPKTDPKKFNLVDPVERNTIGVPSGGWTA
Sbjct: 487 LQDTGIVTPENHPIHLHGFNFFEVGRGVGNFNPKTDPKKFNLVDPVERNTIGVPSGGWTA 546

Query: 121 IRFRADNPGVWFMHCHLEIHTTWGLKMAFLVENGKGPKQSLLPPPSDLPKC 172
           IRFRADNPGVWFMHCHLEIHTTWGLKMAF+VENGKGPKQSLLPPPSDLPKC
Sbjct: 547 IRFRADNPGVWFMHCHLEIHTTWGLKMAFMVENGKGPKQSLLPPPSDLPKC 597

BLAST of Lag0027230 vs. NCBI nr
Match: XP_022145678.1 (laccase-4-like [Momordica charantia])

HSP 1 Score: 363.6 bits (932), Expect = 9.2e-97
Identity = 162/171 (94.74%), Postives = 169/171 (98.83%), Query Frame = 0

Query: 1   MPTTALLQAHFFKINGVFTTDFPGNPPHKFNYTGPGPKNLQTTSGTKVYKLQYNSTVELV 60
           MPTTALLQAHFFKI+GVFTTDFPGNPPHKFNY+GPGP+NLQTTSGTK+YKLQYNSTVELV
Sbjct: 390 MPTTALLQAHFFKISGVFTTDFPGNPPHKFNYSGPGPRNLQTTSGTKLYKLQYNSTVELV 449

Query: 61  LQDTGIITPENHPIHLHGFNFFEVGRGIGNFNPKTDPKKFNLVDPVERNTIGVPSGGWTA 120
           LQDTGIIT ENHP+HLHGFNFFEVGRGIGNFNPKTDPKKFNLVDPVERNTIGVPSGGWTA
Sbjct: 450 LQDTGIITAENHPVHLHGFNFFEVGRGIGNFNPKTDPKKFNLVDPVERNTIGVPSGGWTA 509

Query: 121 IRFRADNPGVWFMHCHLEIHTTWGLKMAFLVENGKGPKQSLLPPPSDLPKC 172
           IRFRADNPGVWFMHCHLE+HTTWGLKMAFLV+NGKGPKQSL PPPSDLPKC
Sbjct: 510 IRFRADNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPKQSLPPPPSDLPKC 560

BLAST of Lag0027230 vs. ExPASy Swiss-Prot
Match: O80434 (Laccase-4 OS=Arabidopsis thaliana OX=3702 GN=IRX12 PE=2 SV=2)

HSP 1 Score: 312.0 bits (798), Expect = 4.2e-84
Identity = 135/171 (78.95%), Postives = 149/171 (87.13%), Query Frame = 0

Query: 1   MPTTALLQAHFFKINGVFTTDFPGNPPHKFNYTGPGPKNLQTTSGTKVYKLQYNSTVELV 60
           MP TALL AH+F  +GVFTTDFP NPPH FNY+G    N+ T +GT++YKL YN+TV+LV
Sbjct: 388 MPKTALLPAHYFNTSGVFTTDFPKNPPHVFNYSGGSVTNMATETGTRLYKLPYNATVQLV 447

Query: 61  LQDTGIITPENHPIHLHGFNFFEVGRGIGNFNPKTDPKKFNLVDPVERNTIGVPSGGWTA 120
           LQDTG+I PENHP+HLHGFNFFEVGRG+GNFN   DPK FNLVDPVERNTIGVPSGGW  
Sbjct: 448 LQDTGVIAPENHPVHLHGFNFFEVGRGLGNFNSTKDPKNFNLVDPVERNTIGVPSGGWVV 507

Query: 121 IRFRADNPGVWFMHCHLEIHTTWGLKMAFLVENGKGPKQSLLPPPSDLPKC 172
           IRFRADNPGVWFMHCHLE+HTTWGLKMAFLVENGKGP QS+LPPP DLPKC
Sbjct: 508 IRFRADNPGVWFMHCHLEVHTTWGLKMAFLVENGKGPNQSILPPPKDLPKC 558

BLAST of Lag0027230 vs. ExPASy Swiss-Prot
Match: Q0IQU1 (Laccase-22 OS=Oryza sativa subsp. japonica OX=39947 GN=LAC22 PE=2 SV=2)

HSP 1 Score: 302.0 bits (772), Expect = 4.3e-81
Identity = 124/171 (72.51%), Postives = 153/171 (89.47%), Query Frame = 0

Query: 1   MPTTALLQAHFFKINGVFTTDFPGNPPHKFNYTGPGPKNLQTTSGTKVYKLQYNSTVELV 60
           MP+T +LQAH++ I GVFT DFP  P HKFNYTG GPKNLQT +GT+VY+L YN++V++V
Sbjct: 394 MPSTPILQAHYYNIPGVFTEDFPATPLHKFNYTGSGPKNLQTMNGTRVYRLPYNASVQVV 453

Query: 61  LQDTGIITPENHPIHLHGFNFFEVGRGIGNFNPKTDPKKFNLVDPVERNTIGVPSGGWTA 120
           LQDTGII+PE+HPIHLHGFNFF VG+G+GN+NP+T P  FNL+DP+ERNTIGVP+GGWTA
Sbjct: 454 LQDTGIISPESHPIHLHGFNFFVVGKGVGNYNPRTSPSTFNLIDPIERNTIGVPTGGWTA 513

Query: 121 IRFRADNPGVWFMHCHLEIHTTWGLKMAFLVENGKGPKQSLLPPPSDLPKC 172
           IRFR+DNPGVWFMHCH E+HT+WGLKMAF+V+NGK P ++L+PPP DLP+C
Sbjct: 514 IRFRSDNPGVWFMHCHFEVHTSWGLKMAFVVDNGKRPSETLIPPPKDLPQC 564

BLAST of Lag0027230 vs. ExPASy Swiss-Prot
Match: Q6ID18 (Laccase-10 OS=Arabidopsis thaliana OX=3702 GN=LAC10 PE=2 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 3.1e-79
Identity = 129/171 (75.44%), Postives = 143/171 (83.63%), Query Frame = 0

Query: 1   MPTTALLQAHFFKINGVFTTDFPGNPPHKFNYTGPGPKNLQTTSGTKVYKLQYNSTVELV 60
           MP TALLQAH+F + G++TTDFP  P   F++TG  P NL T   TK+YKL YNSTV++V
Sbjct: 388 MPKTALLQAHYFNLTGIYTTDFPAKPRRVFDFTGKPPSNLATMKATKLYKLPYNSTVQVV 447

Query: 61  LQDTGIITPENHPIHLHGFNFFEVGRGIGNFNPKTDPKKFNLVDPVERNTIGVPSGGWTA 120
           LQDTG + PENHPIHLHGFNFF VG G GN+N K D  KFNLVDPVERNT+GVPSGGW A
Sbjct: 448 LQDTGNVAPENHPIHLHGFNFFVVGLGTGNYNSKKDSNKFNLVDPVERNTVGVPSGGWAA 507

Query: 121 IRFRADNPGVWFMHCHLEIHTTWGLKMAFLVENGKGPKQSLLPPPSDLPKC 172
           IRFRADNPGVWFMHCHLE+HTTWGLKMAFLVENGKGP QS+ PPPSDLPKC
Sbjct: 508 IRFRADNPGVWFMHCHLEVHTTWGLKMAFLVENGKGPNQSIRPPPSDLPKC 558

BLAST of Lag0027230 vs. ExPASy Swiss-Prot
Match: Q1PDH6 (Laccase-16 OS=Arabidopsis thaliana OX=3702 GN=LAC16 PE=2 SV=2)

HSP 1 Score: 286.6 bits (732), Expect = 1.9e-76
Identity = 126/173 (72.83%), Postives = 146/173 (84.39%), Query Frame = 0

Query: 1   MPTTALLQAHFFKINGVFTTDFPGNPPHKFNYTGPGP--KNLQTTSGTKVYKLQYNSTVE 60
           MP TALLQAHFF I+GVFT DFP  P + ++YT P     N  T  GTK+Y+L YN+TV+
Sbjct: 394 MPKTALLQAHFFNISGVFTDDFPAKPSNPYDYTAPVKLGVNAATMKGTKLYRLPYNATVQ 453

Query: 61  LVLQDTGIITPENHPIHLHGFNFFEVGRGIGNFNPKTDPKKFNLVDPVERNTIGVPSGGW 120
           +VLQ+T +I  +NHP HLHGFNFFEVGRG+GNFNP+ DPK FNLVDPVERNT+GVP+GGW
Sbjct: 454 IVLQNTAMILSDNHPFHLHGFNFFEVGRGLGNFNPEKDPKAFNLVDPVERNTVGVPAGGW 513

Query: 121 TAIRFRADNPGVWFMHCHLEIHTTWGLKMAFLVENGKGPKQSLLPPPSDLPKC 172
           TAIRF ADNPGVWFMHCHLE+HTTWGLKMAF+V+NG GP QSLLPPP+DLPKC
Sbjct: 514 TAIRFIADNPGVWFMHCHLELHTTWGLKMAFVVDNGHGPDQSLLPPPADLPKC 566

BLAST of Lag0027230 vs. ExPASy Swiss-Prot
Match: Q8RYM9 (Laccase-2 OS=Oryza sativa subsp. japonica OX=39947 GN=LAC2 PE=2 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 7.4e-73
Identity = 119/172 (69.19%), Postives = 143/172 (83.14%), Query Frame = 0

Query: 1   MPTTALLQAHFFKINGVFTTDFPGNPPHKFNYTG-PGPKNLQTTSGTKVYKLQYNSTVEL 60
           MP TALLQAH++   GVF  DFP  PP +FNYTG P    L T+ GT++ K+ YN+TVEL
Sbjct: 391 MPRTALLQAHYYGQKGVFAADFPDRPPARFNYTGVPLTAGLGTSLGTRLSKIAYNATVEL 450

Query: 61  VLQDTGIITPENHPIHLHGFNFFEVGRGIGNFNPKTDPKKFNLVDPVERNTIGVPSGGWT 120
           VLQDT +++ E+HP HLHG+NFF VGRG+GNF+P  DP K+NLVDP ERNT+GVP+GGWT
Sbjct: 451 VLQDTNLLSVESHPFHLHGYNFFVVGRGVGNFDPAKDPAKYNLVDPPERNTVGVPAGGWT 510

Query: 121 AIRFRADNPGVWFMHCHLEIHTTWGLKMAFLVENGKGPKQSLLPPPSDLPKC 172
           AIRFRADNPGVWF+HCHLE+HT+WGLKMAFLVE+G GP +S+LPPP DLPKC
Sbjct: 511 AIRFRADNPGVWFLHCHLEVHTSWGLKMAFLVEDGSGPDESVLPPPKDLPKC 562

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038904173.19.9e-9997.66laccase-4-like [Benincasa hispida][more]
XP_023539306.12.9e-9895.91laccase-4-like [Cucurbita pepo subsp. pepo][more]
XP_022937901.14.9e-9895.91laccase-4-like [Cucurbita moschata][more]
XP_022971405.16.4e-9895.91laccase-4-like [Cucurbita maxima][more]
XP_022145678.19.2e-9794.74laccase-4-like [Momordica charantia][more]
Match NameE-valueIdentityDescription
O804344.2e-8478.95Laccase-4 OS=Arabidopsis thaliana OX=3702 GN=IRX12 PE=2 SV=2[more]
Q0IQU14.3e-8172.51Laccase-22 OS=Oryza sativa subsp. japonica OX=39947 GN=LAC22 PE=2 SV=2[more]
Q6ID183.1e-7975.44Laccase-10 OS=Arabidopsis thaliana OX=3702 GN=LAC10 PE=2 SV=1[more]
Q1PDH61.9e-7672.83Laccase-16 OS=Arabidopsis thaliana OX=3702 GN=LAC16 PE=2 SV=2[more]
Q8RYM97.4e-7369.19Laccase-2 OS=Oryza sativa subsp. japonica OX=39947 GN=LAC2 PE=2 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008972CupredoxinGENE3D2.60.40.420coord: 1..171
e-value: 7.7E-57
score: 194.3
IPR008972CupredoxinSUPERFAMILY49503Cupredoxinscoord: 2..171
IPR011706Multicopper oxidase, C-terminalPFAMPF07731Cu-oxidase_2coord: 24..154
e-value: 9.3E-42
score: 142.0
IPR045087Multicopper oxidasePANTHERPTHR11709MULTI-COPPER OXIDASEcoord: 1..171
NoneNo IPR availablePANTHERPTHR11709:SF368LACCASEcoord: 1..171
IPR002355Multicopper oxidase, copper-binding sitePROSITEPS00080MULTICOPPER_OXIDASE2coord: 134..145
IPR033138Multicopper oxidases, conserved sitePROSITEPS00079MULTICOPPER_OXIDASE1coord: 129..149
IPR034289Laccase, third cupredoxin domainCDDcd13897CuRO_3_LCC_plantcoord: 17..154
e-value: 1.01265E-87
score: 251.41

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0027230.1Lag0027230.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0046274 lignin catabolic process
cellular_component GO:0048046 apoplast
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005507 copper ion binding
molecular_function GO:0052716 hydroquinone:oxygen oxidoreductase activity
molecular_function GO:0016491 oxidoreductase activity