Lag0027038 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0027038
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	DUF4050 domain-containing protein
Location	chr10: 44508106 .. 44508878 (+)
RNA-Seq Expression	Lag0027038
Synteny	Lag0027038

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATCAATGGTAGAAATCCTAATTTGAATGGAAATGGAAACCATTCTTCAGGTGACTCAAAGGTTGCCATTAATGGCAAGTCTAACGAGACGACCACATTTGTCAACCACGGTAAATCTCCTTTGCTCAAACCATTGATCGTTAAAATCTTGTGTCGAATATCACAGTTAAGACATGTACCTACCTTTAGGTTAGAGGTTCGAGTCACCTTACTCCCACATGTCAGTTGAATACAAAAAAATATCATACTCTTTGGTAACATCTCCATTGGGTTCACTAATCAAATATAATTGTAAGCGTGATGTTGTGCATCCTTTTCTGTACAGCGGAGATAGCTTGGCATGAAAGAAGAAGGGAATGGGTCGGCGACTGTTCCGAAAACGTGCAACGAGCACCGATGGAACCGATCTTGAGGTATTCATTTAGCTTCAAACATCAGTTTTCAAAACCATTCTTGATTTCCCTGTTCTTGTTTGTTGAAGAAAGCTTCGGCTACAAGACGGTTATTTTCAATAGAAGTTTCGACTTTCGATGTGTTTAGCCATTGACGACACGTTCCGTGTTGCAGCTGGACAACAACTTATGAAGATCTTCTCTTAACTGCAGAACCCTTTAAGCAGCCTATTCCTTTAGCTGTAAGGTTTCTTTGTTCATCCTCATCCTTCCCTTTCGATTACTTTTACTTTATAGAACTTCTCTGGATTGGATTCTGCAGGAAATGGTGGACTTCTTGGTTGATATCTGGCATGAAGATGACCTTTATGATTAG

mRNA sequence

ATGGAAATCAATGGTAGAAATCCTAATTTGAATGGAAATGGAAACCATTCTTCAGGTGACTCAAAGGTTGCCATTAATGGCAAGTCTAACGAGACGACCACATTTGTCAACCACGCGGAGATAGCTTGGCATGAAAGAAGAAGGGAATGGGTCGGCGACTGTTCCGAAAACGTGCAACGAGCACCGATGGAACCGATCTTGAGCTGGACAACAACTTATGAAGATCTTCTCTTAACTGCAGAACCCTTTAAGCAGCCTATTCCTTTAGCTGAAATGGTGGACTTCTTGGTTGATATCTGGCATGAAGATGACCTTTATGATTAG

Coding sequence (CDS)

ATGGAAATCAATGGTAGAAATCCTAATTTGAATGGAAATGGAAACCATTCTTCAGGTGACTCAAAGGTTGCCATTAATGGCAAGTCTAACGAGACGACCACATTTGTCAACCACGCGGAGATAGCTTGGCATGAAAGAAGAAGGGAATGGGTCGGCGACTGTTCCGAAAACGTGCAACGAGCACCGATGGAACCGATCTTGAGCTGGACAACAACTTATGAAGATCTTCTCTTAACTGCAGAACCCTTTAAGCAGCCTATTCCTTTAGCTGAAATGGTGGACTTCTTGGTTGATATCTGGCATGAAGATGACCTTTATGATTAG

Protein sequence

MEINGRNPNLNGNGNHSSGDSKVAINGKSNETTTFVNHAEIAWHERRREWVGDCSENVQRAPMEPILSWTTTYEDLLLTAEPFKQPIPLAEMVDFLVDIWHEDDLYD

Homology

[Close]

BLAST of Lag0027038 vs. NCBI nr
Match: XP_038903277.1 (uncharacterized protein LOC120089909 [Benincasa hispida] >XP_038903278.1 uncharacterized protein LOC120089909 [Benincasa hispida])

HSP 1 Score: 206.1 bits (523), Expect = 1.5e-49
Identity = 98/107 (91.59%), Postives = 102/107 (95.33%), Query Frame = 0


Query: 1   MEINGRNPNLNGNGNHSSGDSKVAINGKSNETTTFVNHAEIAWHERRREWVGDCSENVQR 60
           MEINGRNPNLNG+GNHSSGDSKVA+NGKSNET  F+NHAEIAWHERRREWVGD SENVQR
Sbjct: 4   MEINGRNPNLNGDGNHSSGDSKVALNGKSNETPMFINHAEIAWHERRREWVGDHSENVQR 63

Query: 61  APMEPILSWTTTYEDLLLTAEPFKQPIPLAEMVDFLVDIWHEDDLYD 108
           APMEPILSWTTTY DLLLTAEPF+QPIPLAEMVDFLVDIWHED LYD
Sbjct: 64  APMEPILSWTTTYADLLLTAEPFQQPIPLAEMVDFLVDIWHEDGLYD 110

[Close]

BLAST of Lag0027038 vs. NCBI nr
Match: XP_022144600.1 (uncharacterized protein LOC111014243 isoform X2 [Momordica charantia])

HSP 1 Score: 206.1 bits (523), Expect = 1.5e-49
Identity = 99/107 (92.52%), Postives = 102/107 (95.33%), Query Frame = 0


Query: 1   MEINGRNPNLNGNGNHSSGDSKVAINGKSNETTTFVNHAEIAWHERRREWVGDCSENVQR 60
           MEINGRNPNLNGNGNHSSGD+KVAINGKSNET TFVNHAEI WHERRREWVGD SEN QR
Sbjct: 1   MEINGRNPNLNGNGNHSSGDTKVAINGKSNETRTFVNHAEIDWHERRREWVGDRSENGQR 60

Query: 61  APMEPILSWTTTYEDLLLTAEPFKQPIPLAEMVDFLVDIWHEDDLYD 108
           APMEPILSWTTTYEDLLL+AEPF+QPIPLAEMVDFLVDIWHED LYD
Sbjct: 61  APMEPILSWTTTYEDLLLSAEPFEQPIPLAEMVDFLVDIWHEDGLYD 107

[Close]

BLAST of Lag0027038 vs. NCBI nr
Match: XP_004137841.1 (uncharacterized protein LOC101221441 isoform X2 [Cucumis sativus] >KGN58990.1 hypothetical protein Csa_000823 [Cucumis sativus])

HSP 1 Score: 199.1 bits (505), Expect = 1.9e-47
Identity = 96/107 (89.72%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 1   MEINGRNPNLNGNGNHSSGDSKVAINGKSNETTTFVNHAEIAWHERRREWVGDCSENVQR 60
           MEINGRNPNLNGNGNHSS DSKVA+NGKSNE  TF+NHAEIAWHERRREWVGD +ENVQR
Sbjct: 4   MEINGRNPNLNGNGNHSSNDSKVALNGKSNEMPTFINHAEIAWHERRREWVGDRAENVQR 63

Query: 61  APMEPILSWTTTYEDLLLTAEPFKQPIPLAEMVDFLVDIWHEDDLYD 108
            PMEPILSWTTTYED LLTAEPF+QPIPLAEMVDFLVDIWHED LYD
Sbjct: 64  EPMEPILSWTTTYED-LLTAEPFQQPIPLAEMVDFLVDIWHEDGLYD 109

[Close]

BLAST of Lag0027038 vs. NCBI nr
Match: KAG6580622.1 (hypothetical protein SDJN03_20624, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 194.5 bits (493), Expect = 4.6e-46
Identity = 94/107 (87.85%), Postives = 97/107 (90.65%), Query Frame = 0


Query: 1   MEINGRNPNLNGNGNHSSGDSKVAINGKSNETTTFVNHAEIAWHERRREWVGDCSENVQR 60
           MEINGRNPNL GNGNHSSGDS V    KSNE  TFVNHAEIAWHERRREWVGDCS N+Q+
Sbjct: 183 MEINGRNPNLKGNGNHSSGDSNV----KSNEMPTFVNHAEIAWHERRREWVGDCSGNMQQ 242

Query: 61  APMEPILSWTTTYEDLLLTAEPFKQPIPLAEMVDFLVDIWHEDDLYD 108
            PMEPILSWTTTYEDLLLTAEPF+QPIPLAEMVDFLVDIWHEDDLYD
Sbjct: 243 VPMEPILSWTTTYEDLLLTAEPFQQPIPLAEMVDFLVDIWHEDDLYD 285

[Close]

BLAST of Lag0027038 vs. NCBI nr
Match: KAG7017379.1 (hypothetical protein SDJN02_19244, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 194.5 bits (493), Expect = 4.6e-46
Identity = 94/107 (87.85%), Postives = 97/107 (90.65%), Query Frame = 0


Query: 1   MEINGRNPNLNGNGNHSSGDSKVAINGKSNETTTFVNHAEIAWHERRREWVGDCSENVQR 60
           MEINGRNPNL GNGNHSSGDS V    KSNE  TFVNHAEIAWHERRREWVGDCS N+Q+
Sbjct: 4   MEINGRNPNLKGNGNHSSGDSNV----KSNEMPTFVNHAEIAWHERRREWVGDCSGNMQQ 63

Query: 61  APMEPILSWTTTYEDLLLTAEPFKQPIPLAEMVDFLVDIWHEDDLYD 108
            PMEPILSWTTTYEDLLLTAEPF+QPIPLAEMVDFLVDIWHEDDLYD
Sbjct: 64  VPMEPILSWTTTYEDLLLTAEPFQQPIPLAEMVDFLVDIWHEDDLYD 106

The following BLAST results are available for this feature:

BLAST of Lag0027038 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903277.1	1.5e-49	91.59	uncharacterized protein LOC120089909 [Benincasa hispida] >XP_038903278.1 unchara...	[more]
XP_022144600.1	1.5e-49	92.52	uncharacterized protein LOC111014243 isoform X2 [Momordica charantia]	[more]
XP_004137841.1	1.9e-47	89.72	uncharacterized protein LOC101221441 isoform X2 [Cucumis sativus] >KGN58990.1 hy...	[more]
KAG6580622.1	4.6e-46	87.85	hypothetical protein SDJN03_20624, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7017379.1	4.6e-46	87.85	hypothetical protein SDJN02_19244, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Lag0027038 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025124	Domain of unknown function DUF4050	PFAM	PF13259	DUF4050	coord: 57..107 e-value: 1.9E-12 score: 47.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	PANTHER	PTHR33373:SF23	DUF4050 FAMILY PROTEIN	coord: 1..106
None	No IPR available	PANTHER	PTHR33373	OS07G0479600 PROTEIN	coord: 1..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0027038.1	Lag0027038.1	mRNA