Lag0026889 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0026889
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionVQ motif-containing protein 22-like
Locationchr10: 42993099 .. 42993872 (+)
RNA-Seq ExpressionLag0026889
SyntenyLag0026889
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTAAATTCGACTATGTGAATAGCCAACACAAGCATAGCTCACCTTGCATAAAGCTTATACTAACGACCAAGAGGTTTGTGGTTTGATTCCCCATGTCACATGTTGTCTACAAAAAATACCTAAAGTTTGAACTTAATGTCTATTTGGTCCCTAGAGTTTATGAGGTGGCCAATTTAATAATTTTATATTATTATTTTTAATTACATGTCATTTTTTCTTTTTTTTTTCCTCTTTCTCGTACTCTCTCTTCTCTTATCTTCCCTTCTTCCCTCCGTTCACCTTCTTCTTCCCTTTTCGATCACGACCACAAAAATTTCGACTCGGTTTCCGATTCCACCGTCGGCCTCAGCCTAGATGGGGGTCGAGTCGTCAAGCCGGTCCGCAAGCGCTCCAGAGCCTCCCGTCAGACCCCAACCACTTTGCTCAACACGGGCGCGACAAATTTCCGAGCCATGGTTCAGCAATTCACCGGTGGGCCCTCCAACGCCAATAACGTCGACGCCAATTTCCCTGCAATCGATTTCCCCGGTAATTCCAACGTCGCTTTTGACCCGACCGTCGCCGCCGCCTACCAACTCCAGTCGAAGCTATTCCAGTTTCAGAACCAGTCGCTGCCGCAGCAACTGCCGTTTATGTTCTCATTGGGGAATTCGGCGGCGAGTGAGCCGTATTTTCAGGGTGGGGGGTCGAGGAGTAACGATGAGAATGTTGATTACATGGGGCTGTTTGATGGGTTTTCTCCGACGGCGCAGAATCCTCGCCCGACGTGA

mRNA sequence

ATGATTAAATTCGACTATGTGAATAGCCAACACAAGCATAGCTCACCTTGCATAAAGCTTATACTAACGACCAAGAGCCTAGATGGGGGTCGAGTCGTCAAGCCGGTCCGCAAGCGCTCCAGAGCCTCCCGTCAGACCCCAACCACTTTGCTCAACACGGGCGCGACAAATTTCCGAGCCATGGTTCAGCAATTCACCGGTGGGCCCTCCAACGCCAATAACGTCGACGCCAATTTCCCTGCAATCGATTTCCCCGGTAATTCCAACGTCGCTTTTGACCCGACCGTCGCCGCCGCCTACCAACTCCAGTCGAAGCTATTCCAGTTTCAGAACCAGTCGCTGCCGCAGCAACTGCCGTTTATGTTCTCATTGGGGAATTCGGCGGCGAGTGAGCCGTATTTTCAGGGTGGGGGGTCGAGGAGTAACGATGAGAATGTTGATTACATGGGGCTGTTTGATGGGTTTTCTCCGACGGCGCAGAATCCTCGCCCGACGTGA

Coding sequence (CDS)

ATGATTAAATTCGACTATGTGAATAGCCAACACAAGCATAGCTCACCTTGCATAAAGCTTATACTAACGACCAAGAGCCTAGATGGGGGTCGAGTCGTCAAGCCGGTCCGCAAGCGCTCCAGAGCCTCCCGTCAGACCCCAACCACTTTGCTCAACACGGGCGCGACAAATTTCCGAGCCATGGTTCAGCAATTCACCGGTGGGCCCTCCAACGCCAATAACGTCGACGCCAATTTCCCTGCAATCGATTTCCCCGGTAATTCCAACGTCGCTTTTGACCCGACCGTCGCCGCCGCCTACCAACTCCAGTCGAAGCTATTCCAGTTTCAGAACCAGTCGCTGCCGCAGCAACTGCCGTTTATGTTCTCATTGGGGAATTCGGCGGCGAGTGAGCCGTATTTTCAGGGTGGGGGGTCGAGGAGTAACGATGAGAATGTTGATTACATGGGGCTGTTTGATGGGTTTTCTCCGACGGCGCAGAATCCTCGCCCGACGTGA

Protein sequence

MIKFDYVNSQHKHSSPCIKLILTTKSLDGGRVVKPVRKRSRASRQTPTTLLNTGATNFRAMVQQFTGGPSNANNVDANFPAIDFPGNSNVAFDPTVAAAYQLQSKLFQFQNQSLPQQLPFMFSLGNSAASEPYFQGGGSRSNDENVDYMGLFDGFSPTAQNPRPT
Homology
BLAST of Lag0026889 vs. NCBI nr
Match: KAG6608003.1 (VQ motif-containing protein 22, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037520.1 VQ motif-containing protein 22, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 180.6 bits (457), Expect = 1.1e-41
Identity = 100/141 (70.92%), Postives = 108/141 (76.60%), Query Frame = 0

Query: 28  DGGRVVKPVRKRSRASRQTPTTLLNTGATNFRAMVQQFTGGPSNANNVDANFPAIDFPGN 87
           DGGRV KPVRKR+RASR+TPTTL NT A NFRAMVQQFTGGPSN     +NF    FP N
Sbjct: 61  DGGRVSKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGPSNN---ASNFSTFGFPSN 120

Query: 88  SNVAFDPTVAAAYQLQSKLFQFQNQSLP----QQLPFMFSLGNSAASEPYF-QGGGSRSN 147
           SN  FDPTVAA +     +FQFQNQ+ P    QQ PFMFSLGNSAASE +F QGGG RSN
Sbjct: 121 SNAVFDPTVAAYHLDAPPVFQFQNQAPPPPPLQQPPFMFSLGNSAASETFFQQGGGLRSN 180

Query: 148 DENVDYMGLFDGFSPTAQNPR 164
           D NV+YMGLFDG SPTAQNPR
Sbjct: 181 DSNVNYMGLFDGSSPTAQNPR 198

BLAST of Lag0026889 vs. NCBI nr
Match: XP_022940097.1 (VQ motif-containing protein 22-like [Cucurbita moschata])

HSP 1 Score: 180.3 bits (456), Expect = 1.4e-41
Identity = 100/142 (70.42%), Postives = 108/142 (76.06%), Query Frame = 0

Query: 28  DGGRVVKPVRKRSRASRQTPTTLLNTGATNFRAMVQQFTGGPSNANNVDANFPAIDFPGN 87
           DGGRV KPVRKR+RASR+TPTTL NT A NFRAMVQQFTGGPSN     +NF    FP N
Sbjct: 61  DGGRVSKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGPSNN---ASNFSTFGFPSN 120

Query: 88  SNVAFDPTVAAAYQLQSKLFQFQNQSLP-----QQLPFMFSLGNSAASEPYF-QGGGSRS 147
           SN  FDPTVAA +     +FQFQNQ+ P     QQ PFMFSLGNSAASE +F QGGG RS
Sbjct: 121 SNAVFDPTVAAYHLDAPPVFQFQNQAPPPPPPLQQPPFMFSLGNSAASETFFQQGGGLRS 180

Query: 148 NDENVDYMGLFDGFSPTAQNPR 164
           ND NV+YMGLFDG SPTAQNPR
Sbjct: 181 NDSNVNYMGLFDGSSPTAQNPR 199

BLAST of Lag0026889 vs. NCBI nr
Match: XP_023525782.1 (VQ motif-containing protein 22-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 180.3 bits (456), Expect = 1.4e-41
Identity = 100/141 (70.92%), Postives = 107/141 (75.89%), Query Frame = 0

Query: 28  DGGRVVKPVRKRSRASRQTPTTLLNTGATNFRAMVQQFTGGPSNANNVDANFPAIDFPGN 87
           DGGRV KPVRKR+RASR+TPTTL NT A NFRAMVQQFTGGPSN     +NF    FP N
Sbjct: 61  DGGRVSKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGPSNN---ASNFSTFGFPSN 120

Query: 88  SNVAFDPTVAAAYQLQSKLFQFQNQSLP----QQLPFMFSLGNSAASEPYF-QGGGSRSN 147
           SN  FDPTVAA +     +FQFQNQ  P    QQ PFMFSLGNSAASE +F QGGG RSN
Sbjct: 121 SNAVFDPTVAAYHLEAPPVFQFQNQPPPHAPLQQPPFMFSLGNSAASETFFQQGGGLRSN 180

Query: 148 DENVDYMGLFDGFSPTAQNPR 164
           D NV+YMGLFDG SPTAQNPR
Sbjct: 181 DSNVNYMGLFDGSSPTAQNPR 198

BLAST of Lag0026889 vs. NCBI nr
Match: XP_022981901.1 (VQ motif-containing protein 22-like [Cucurbita maxima])

HSP 1 Score: 172.9 bits (437), Expect = 2.2e-39
Identity = 97/141 (68.79%), Postives = 105/141 (74.47%), Query Frame = 0

Query: 28  DGGRVVKPVRKRSRASRQTPTTLLNTGATNFRAMVQQFTGGPSNANNVDANFPAIDFPGN 87
           DGGRV KPVRKR+RASR+TPTTL NT A NFRAMVQQFTGGPSN     +NF    F  N
Sbjct: 64  DGGRVSKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGPSNN---ASNFSTFGFSSN 123

Query: 88  SNVAFDPTVAAAYQLQSKLFQFQNQSLP----QQLPFMFSLGNSAASEPYF-QGGGSRSN 147
           SN  FDP+VAA       +FQFQNQ+ P    QQ PFMFSLGNSAASE +F QGGG RSN
Sbjct: 124 SNAVFDPSVAAYNLNAPPVFQFQNQAPPPAPLQQQPFMFSLGNSAASETFFQQGGGLRSN 183

Query: 148 DENVDYMGLFDGFSPTAQNPR 164
           D NV+Y GLFDG SPTAQNPR
Sbjct: 184 DSNVNYTGLFDGSSPTAQNPR 201

BLAST of Lag0026889 vs. NCBI nr
Match: XP_038898930.1 (VQ motif-containing protein 22-like [Benincasa hispida])

HSP 1 Score: 167.2 bits (422), Expect = 1.2e-37
Identity = 100/148 (67.57%), Postives = 107/148 (72.30%), Query Frame = 0

Query: 28  DGGRVVKPVRKRSRASRQTPTTLLNTGATNFRAMVQQFTGGPSNANNVDANFPAIDFPGN 87
           DG R VKPVRKRSRASR+TPTT+LNT A NFRAMVQQFTGGPSNANN   NFP   FPGN
Sbjct: 63  DGSR-VKPVRKRSRASRRTPTTVLNTDAANFRAMVQQFTGGPSNANNNLHNFPTFGFPGN 122

Query: 88  SNVAFDPTVAAAYQLQS-----KLFQFQNQSLP-QQLPFMFSLGNSAASEPYFQ---GGG 147
               FDP  AAAY LQ       LFQFQ+Q  P QQ PFMFSL NSAA   +FQ   GGG
Sbjct: 123 CQALFDP-AAAAYHLQDPPQQPTLFQFQSQPPPLQQPPFMFSLSNSAAGAAFFQQPHGGG 182

Query: 148 SRS-NDENVDYMGLFDGFSPTAQNPRPT 166
           SRS ND N++YM +FDG SPT QN RPT
Sbjct: 183 SRSNNDNNINYMEVFDGSSPTPQNHRPT 208

BLAST of Lag0026889 vs. ExPASy Swiss-Prot
Match: Q9LIE6 (VQ motif-containing protein 22 OS=Arabidopsis thaliana OX=3702 GN=VQ22 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.4e-14
Identity = 59/135 (43.70%), Postives = 73/135 (54.07%), Query Frame = 0

Query: 26  SLDGGRVVKPVRKRSRASRQTPTTLLNTGATNFRAMVQQFTGGPSNANNVDANFPAIDF- 85
           S + GRV KP R+RSRASR+TPTTLLNT  +NFRAMVQQ+TGGPS          A+ F 
Sbjct: 44  SPETGRVTKPTRRRSRASRRTPTTLLNTDTSNFRAMVQQYTGGPS----------AMAFG 103

Query: 86  PGNSNVAF------DPTVAAAYQLQSKL-FQFQNQSLPQQLPFMFSLGNSAASEPYFQGG 145
            GN+  AF      DP+  ++ Q   +  FQ      P Q P+MFSL N      Y    
Sbjct: 104 SGNTTSAFSLTSSSDPSAGSSQQAPWQYNFQPHAPLQPPQRPYMFSLNNVNPVVGY---- 163

Query: 146 GSRSNDENVDYMGLF 153
            S  N+ N    G+F
Sbjct: 164 -SNMNNPNTMVSGVF 163

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6608003.11.1e-4170.92VQ motif-containing protein 22, partial [Cucurbita argyrosperma subsp. sororia] ... [more]
XP_022940097.11.4e-4170.42VQ motif-containing protein 22-like [Cucurbita moschata][more]
XP_023525782.11.4e-4170.92VQ motif-containing protein 22-like [Cucurbita pepo subsp. pepo][more]
XP_022981901.12.2e-3968.79VQ motif-containing protein 22-like [Cucurbita maxima][more]
XP_038898930.11.2e-3767.57VQ motif-containing protein 22-like [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Q9LIE63.4e-1443.70VQ motif-containing protein 22 OS=Arabidopsis thaliana OX=3702 GN=VQ22 PE=2 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008889VQPFAMPF05678VQcoord: 47..71
e-value: 4.7E-9
score: 35.6
IPR039609VQ motif-containing protein 15/22PANTHERPTHR33179VQ MOTIF-CONTAINING PROTEINcoord: 15..142
NoneNo IPR availablePANTHERPTHR33179:SF29VQ MOTIF-CONTAINING PROTEINcoord: 15..142

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0026889.1Lag0026889.1mRNA