Lag0026292 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0026292
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRNase H domain-containing protein
Locationchr10: 34039646 .. 34040362 (+)
RNA-Seq ExpressionLag0026292
SyntenyLag0026292
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAAAATATGGAATAACTTGTGGAAGATGAAAATCCCTAATAAGATCAAACTTTATTGCTGGAAAGCCCTCAAGAATTCTTTGCCTAACTATGTAAATTTAAATAACAGAGGTATCGATTTGCCAACTCATTGTCCTATTTGTAATCTTTATCCTGAAAGCACTTATCACTGTCTTTTTAGTTGCTATCGGGCTCAAGAACTGTGGAGGCTTACCTTTGATTGAGTTTTTCTGGAGGAGGATCTTCAAGGAAGTTTCATTGATAGATGGCTGAAGATAGACGCGCATTCCACGTTGAAGGAGCTCGAACTAGTCACGATCACCTGTTGGGCCATATGGAGTGATAGAAACAAAATTGTCCATGAGGAATCGATACCTCTGGCTAGCATCAAGAGCATTTGGATTAAAGAGTACCTGGAGTCGTTCTGGCGAGCAAATATTTGTTCAAACCCCAAAGGATCTGGAATTAATCAAGCAGTTTCTTCATCTTTGATTCTCCCTGCATGTTGGTCCTCTCCCCCGTGTGGCTTCTGGAAATTAAACTCTGATGCCGCATGCTCAATTTCTCCTCCAAAGGTTGGAATAGGCCCGATTTGTAGAAATGAAAATGGAGAAATAATGGTTGCCTCAGCTTCCTCTTTCGATGGTATCTCAGCAGCCCATATGATCGAATTAAAAGCAATATTGGAAGGGATGAGATTGGCACTGGAGTGA

mRNA sequence

ATGAACAAAATATGGAATAACTTGTGGAAGATGAAAATCCCTAATAAGATCAAACTTTATTGCTGGAAAGCCCTCAAGAATTCTTTGCCTAACTATGAGGATCTTCAAGGAAGTTTCATTGATAGATGGCTGAAGATAGACGCGCATTCCACGTTGAAGGAGCTCGAACTAGTCACGATCACCTGTTGGGCCATATGGAGTGATAGAAACAAAATTGTCCATGAGGAATCGATACCTCTGGCTAGCATCAAGAGCATTTGGATTAAAGAGTACCTGGAGTCGTTCTGGCGAGCAAATATTTGTTCAAACCCCAAAGGATCTGGAATTAATCAAGCAGTTTCTTCATCTTTGATTCTCCCTGCATGTTGGTCCTCTCCCCCGTGTGGCTTCTGGAAATTAAACTCTGATGCCGCATGCTCAATTTCTCCTCCAAAGGTTGGAATAGGCCCGATTTGTAGAAATGAAAATGGAGAAATAATGGTTGCCTCAGCTTCCTCTTTCGATGGTATCTCAGCAGCCCATATGATCGAATTAAAAGCAATATTGGAAGGGATGAGATTGGCACTGGAGTGA

Coding sequence (CDS)

ATGAACAAAATATGGAATAACTTGTGGAAGATGAAAATCCCTAATAAGATCAAACTTTATTGCTGGAAAGCCCTCAAGAATTCTTTGCCTAACTATGAGGATCTTCAAGGAAGTTTCATTGATAGATGGCTGAAGATAGACGCGCATTCCACGTTGAAGGAGCTCGAACTAGTCACGATCACCTGTTGGGCCATATGGAGTGATAGAAACAAAATTGTCCATGAGGAATCGATACCTCTGGCTAGCATCAAGAGCATTTGGATTAAAGAGTACCTGGAGTCGTTCTGGCGAGCAAATATTTGTTCAAACCCCAAAGGATCTGGAATTAATCAAGCAGTTTCTTCATCTTTGATTCTCCCTGCATGTTGGTCCTCTCCCCCGTGTGGCTTCTGGAAATTAAACTCTGATGCCGCATGCTCAATTTCTCCTCCAAAGGTTGGAATAGGCCCGATTTGTAGAAATGAAAATGGAGAAATAATGGTTGCCTCAGCTTCCTCTTTCGATGGTATCTCAGCAGCCCATATGATCGAATTAAAAGCAATATTGGAAGGGATGAGATTGGCACTGGAGTGA

Protein sequence

MNKIWNNLWKMKIPNKIKLYCWKALKNSLPNYEDLQGSFIDRWLKIDAHSTLKELELVTITCWAIWSDRNKIVHEESIPLASIKSIWIKEYLESFWRANICSNPKGSGINQAVSSSLILPACWSSPPCGFWKLNSDAACSISPPKVGIGPICRNENGEIMVASASSFDGISAAHMIELKAILEGMRLALE
Homology
BLAST of Lag0026292 vs. NCBI nr
Match: XP_018821989.1 (uncharacterized protein LOC108992010 [Juglans regia] >KAF5454504.1 hypothetical protein F2P56_024162 [Juglans regia])

HSP 1 Score: 96.7 bits (239), Expect = 2.3e-16
Identity = 60/197 (30.46%), Postives = 99/197 (50.25%), Query Frame = 0

Query: 1   MNKIWNNLWKMKIPNKIKLYCWKALKNSLPNYEDLQ-------GSFIDRWLKIDAHSTLK 60
           + K+W  +WKMK+P KI+++ WKA+K  LP  ++L+        SFID  LK+  ++  +
Sbjct: 496 LRKLWKAIWKMKLPPKIRVFAWKAVKGVLPTKDNLRKKHVDDFSSFIDAALKMQLYTCAE 555

Query: 61  ELELVTITCWAIWSDRNKIVHEESIPLASIKSIWIKEYLESFWRANICSNPKG-SGINQA 120
            LE   + CW++W+ RN  + E        K + +++ L         +  KG   +   
Sbjct: 556 LLECFFLICWSVWNRRNWKIFEG-------KEVHVEDLL-----GRALAMQKGFRELRNK 615

Query: 121 VSSSLILPACWSSPPCGFWKLNSDAACSISPPKVGIGPICRNENGEIMVASASSFDGISA 180
             S +     W +PP G +KLN D A S      GIG + R+  GE+++A+A        
Sbjct: 616 PLSVIRKHDRWKAPPPGTFKLNVDGAFSQDGSVTGIGAVLRDSKGEVLMAAAIRERASLN 675

Query: 181 AHMIELKAILEGMRLAL 190
            + +E  AIL G++L L
Sbjct: 676 VYELEGLAILRGLQLCL 680

BLAST of Lag0026292 vs. NCBI nr
Match: XP_030495196.1 (uncharacterized protein LOC115710989 [Cannabis sativa])

HSP 1 Score: 96.7 bits (239), Expect = 2.3e-16
Identity = 61/237 (25.74%), Postives = 104/237 (43.88%), Query Frame = 0

Query: 2    NKIWNNLWKMKIPNKIKLYCWKALKNSLP------------------------------- 61
            +K W + W +++P KIK++ W+ + ++LP                               
Sbjct: 802  SKWWKSFWSLQLPEKIKIFAWRVIHDALPVATSLVKRKVITDAACSVCRQAWESVGHVFF 861

Query: 62   ----------------NYEDLQGSFIDRWLKIDAHS-TLKELELVTITCWAIWSDRNKIV 121
                            +++     +   +LK  A S T  E E +  T W IWS+RN++V
Sbjct: 862  GCHYAKNVWRLMHQSFDWKKAISMYKGDYLKFLASSHTKAEFEQIICTLWCIWSERNQVV 921

Query: 122  HEESIPLASIKSIWIKEYLESFWRANICSNPKGSGINQAVSSSLILPACWSSPPCGFWKL 181
            H +    AS  + +  +YL+++  A +   P  +  +Q  S S    A W  PP G  KL
Sbjct: 922  HSKKSRSASALAAFSLQYLDNYRAAQLKYRPPATS-SQVPSPSTAPSAPWQPPPMGTLKL 981

Query: 182  NSDAACSISPPKVGIGPICRNENGEIMVASASSFDGISAAHMIELKAILEGMRLALE 191
            N DAA   +  K+G+G + RN  G+++ A +    G  A+H +E KA+  G+   L+
Sbjct: 982  NIDAAFDKTSSKIGVGAVIRNYVGQVIAALSMPIVGNFASHEMEAKAMFHGINWVLQ 1037

BLAST of Lag0026292 vs. NCBI nr
Match: XP_030505962.1 (uncharacterized protein LOC115720894 [Cannabis sativa])

HSP 1 Score: 93.2 bits (230), Expect = 2.6e-15
Identity = 60/231 (25.97%), Postives = 95/231 (41.13%), Query Frame = 0

Query: 5    WNNLWKMKIPNKIKLYCWKALKNSLPNYEDL----------------------------- 64
            W   W +K+P+K+K++ WKA   ++P    L                             
Sbjct: 852  WKYFWNLKLPSKVKIFVWKAFHRAIPTAASLCNMKIIDSAACSLCSNAWESIKHALLLCK 911

Query: 65   -------------------QGSFIDRWLKIDAHSTLKELELVTITCWAIWSDRNKIVHEE 124
                               +  F D  + +    T  E+E +  T W +W+DRN  +H +
Sbjct: 912  HAKKVWHSAGYSLDYDMLARMKFSDCLVLLSTLKTTSEMEQMFCTMWFLWTDRNNYIHGK 971

Query: 125  SIPLASIKSIWIKEYLESFWRANICSNPKGSGINQA--VSSSLILPACWSSPPCGFWKLN 184
              P+ S   IW K        A  C+    S I  +  +S+     + W  PP    K+N
Sbjct: 972  --PVLSPSQIWAKS------AAYYCNFQHHSTIQNSPMISTGAATQSKWIRPPLNELKMN 1031

Query: 185  SDAACSISPPKVGIGPICRNENGEIMVASASSFDGISAAHMIELKAILEGM 186
             DAAC +S  K+G+G I RN +G+I+ A + SF G   +  +E KA+L G+
Sbjct: 1032 VDAACDVSRNKIGVGIIVRNSSGQIVAAYSKSFTGRYKSQEMEAKALLTGL 1074

BLAST of Lag0026292 vs. NCBI nr
Match: XP_030508852.1 (uncharacterized protein LOC115723496 [Cannabis sativa])

HSP 1 Score: 91.3 bits (225), Expect = 9.8e-15
Identity = 61/226 (26.99%), Postives = 90/226 (39.82%), Query Frame = 0

Query: 5    WNNLWKMKIPNKIKLYCWKALKNSLPNYEDL----------------------------- 64
            W+N WK+K+P K++++ WK    SLP   +L                             
Sbjct: 1052 WSNFWKLKLPPKVRIFVWKVFHTSLPVAAELYRRHIAFSPYCTICNSCEETVHHALFSCP 1111

Query: 65   -------------------QGSFIDRWLKIDAHSTLKELELVTITCWAIWSDRNKIVHEE 124
                               + S  D  L +    +  ELEL  + CW+IW +RN I H  
Sbjct: 1112 RAKAVWELSNFSIDFQTIERSSTADTLLLLSTSLSSSELELFLVLCWSIWHERNAIYHGN 1171

Query: 125  SIPLASIKSIWIKEYLESFWRANICSNPK-----GSGINQAVSSSLILPACWSSPPCGFW 178
            S+   +  + +   YL  F +A    N K     G+      SS  I    W++PP G  
Sbjct: 1172 SVRTPAAVAAYAPSYLTEFQQAR-AKNAKPVTASGAATPSRPSSEFIHAPKWTTPPRGRL 1231

BLAST of Lag0026292 vs. NCBI nr
Match: XP_030936552.1 (uncharacterized protein LOC115961769 [Quercus lobata])

HSP 1 Score: 90.9 bits (224), Expect = 1.3e-14
Identity = 61/235 (25.96%), Postives = 96/235 (40.85%), Query Frame = 0

Query: 4   IWNNLWKMKIPNKIKLYCWKALKNSLPNYEDL---------------------------- 63
           +W  LW + +P KIK++ W+A  N LP  E +                            
Sbjct: 18  LWKRLWHLHLPAKIKVFAWRACVNGLPMMEAIFRRWISQNMACPVCGNDAASVDHALLTC 77

Query: 64  --------------------QGSFIDRWLKIDAHSTLKELELVTITCWAIWSDRNKIVHE 123
                               + SF+D  L + +HSTL++LEL   T WAIWS+RN IVH+
Sbjct: 78  DFSSLVWDFWLENPLHTQGFKNSFLDSALSVLSHSTLQDLELFFATAWAIWSNRNSIVHK 137

Query: 124 ESIPLASIKSIWIKEYLESFWRANICSNPKGSGINQAVSSSLILPACWSSPPCGFWKLNS 183
           +      +  + +     S      CS     G+ +  SS       WS PP G +K+N 
Sbjct: 138 D----GGLSPLQVWHRARSAVEEFTCSTSWDFGLVRPASSR------WSPPPPGVFKVNV 197

Query: 184 DAACSISPPKVGIGPICRNENGEIMVASASSFDGISAAHMIELKAILEGMRLALE 191
           D A S       +G + R+ NG+++ A         +  + E+ A+ +G+  A E
Sbjct: 198 DGASSEQEGSSSVGVVIRDFNGQVVAALCLPLQSYFSTELSEVFALEQGVLFAQE 242

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_018821989.12.3e-1630.46uncharacterized protein LOC108992010 [Juglans regia] >KAF5454504.1 hypothetical ... [more]
XP_030495196.12.3e-1625.74uncharacterized protein LOC115710989 [Cannabis sativa][more]
XP_030505962.12.6e-1525.97uncharacterized protein LOC115720894 [Cannabis sativa][more]
XP_030508852.19.8e-1526.99uncharacterized protein LOC115723496 [Cannabis sativa][more]
XP_030936552.11.3e-1425.96uncharacterized protein LOC115961769 [Quercus lobata][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 134..189
e-value: 2.5E-6
score: 27.3
NoneNo IPR availablePANTHERPTHR47074BNAC02G40300D PROTEINcoord: 109..190
NoneNo IPR availablePANTHERPTHR47074:SF29OS04G0488900 PROTEINcoord: 109..190
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 129..190

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0026292.1Lag0026292.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity