Lag0025684 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0025684
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	AA_kinase domain-containing protein
Location	chr10: 17919804 .. 17920295 (-)
RNA-Seq Expression	Lag0025684
Synteny	Lag0025684

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAGGGGTGAAGCAATAAATTTTAAATCCTCTGACTTGACAGTGGATAACAGAGCCTGGAATAGTTTTCTGTGTGCCAAACTCATGCCTATGATGCATCTTCATGATGTAACAAAGGAAAGAGCGGCTCTGTTAGTCGCTATAGCGATCGACCGCAATGTAGATGTAGGAAAAGTTATATATGCTTCCATGCGCCGGATTCGCAGAGGAGCCACCACAGTAGGTCTAGGGCATCCTTCCCTCATCACAGCACTCTGCAGAGCCGCTGGGATCTTTGTGGACCCCCGTGAGGAGATTAGCCATCCTGCAGGTGTGATTGATGGGAATTTCATCATGATTAGATTTAGAGAACATGGACCTAGGATAACCCATTCCCCACCTCCAACCCAACAGGAAGAGCTAGAAGATGAACCCCTAAAGCAGGGAGGGCAACCTCATGATGAGCATCCCCTTCTCACGTTTGAGGCGTTAGAGGAGAGGATGAATTAG

mRNA sequence

ATGAGAAGGGGTGAAGCAATAAATTTTAAATCCTCTGACTTGACAGTGGATAACAGAGCCTGGAATAGTTTTCTGTGTGCCAAACTCATGCCTATGATGCATCTTCATGATGTAACAAAGGAAAGAGCGGCTCTGTTAGTCGCTATAGCGATCGACCGCAATGTAGATGTAGGAAAAGTTATATATGCTTCCATGCGCCGGATTCGCAGAGGAGCCACCACAGTAGGTCTAGGGCATCCTTCCCTCATCACAGCACTCTGCAGAGCCGCTGGGATCTTTGTGGACCCCCGTGAGGAGATTAGCCATCCTGCAGGTGTGATTGATGGGAATTTCATCATGATTAGATTTAGAGAACATGGACCTAGGATAACCCATTCCCCACCTCCAACCCAACAGGAAGAGCTAGAAGATGAACCCCTAAAGCAGGGAGGGCAACCTCATGATGAGCATCCCCTTCTCACGTTTGAGGCGTTAGAGGAGAGGATGAATTAG

Coding sequence (CDS)

ATGAGAAGGGGTGAAGCAATAAATTTTAAATCCTCTGACTTGACAGTGGATAACAGAGCCTGGAATAGTTTTCTGTGTGCCAAACTCATGCCTATGATGCATCTTCATGATGTAACAAAGGAAAGAGCGGCTCTGTTAGTCGCTATAGCGATCGACCGCAATGTAGATGTAGGAAAAGTTATATATGCTTCCATGCGCCGGATTCGCAGAGGAGCCACCACAGTAGGTCTAGGGCATCCTTCCCTCATCACAGCACTCTGCAGAGCCGCTGGGATCTTTGTGGACCCCCGTGAGGAGATTAGCCATCCTGCAGGTGTGATTGATGGGAATTTCATCATGATTAGATTTAGAGAACATGGACCTAGGATAACCCATTCCCCACCTCCAACCCAACAGGAAGAGCTAGAAGATGAACCCCTAAAGCAGGGAGGGCAACCTCATGATGAGCATCCCCTTCTCACGTTTGAGGCGTTAGAGGAGAGGATGAATTAG

Protein sequence

MRRGEAINFKSSDLTVDNRAWNSFLCAKLMPMMHLHDVTKERAALLVAIAIDRNVDVGKVIYASMRRIRRGATTVGLGHPSLITALCRAAGIFVDPREEISHPAGVIDGNFIMIRFREHGPRITHSPPPTQQEELEDEPLKQGGQPHDEHPLLTFEALEERMN

Homology

[Close]

BLAST of Lag0025684 vs. NCBI nr
Match: KAA0033353.1 (putative S-locus lectin protein kinase family protein [Cucumis melo var. makuwa] >TYJ96637.1 putative S-locus lectin protein kinase family protein [Cucumis melo var. makuwa])

HSP 1 Score: 128.3 bits (321), Expect = 6.2e-26
Identity = 63/110 (57.27%), Postives = 79/110 (71.82%), Query Frame = 0


Query: 4   GEAINFKSSDLTVDNRAWNSFLCAKLMPMMHLHDVTKERAALLVAIAIDRNVDVGKVIYA 63
           GE I FKSS+LTV N+ W+ F+CAKL+P+ H   VTKERA LL AIA  R+VDVGKVI+ 
Sbjct: 153 GEPIRFKSSNLTVSNQVWHKFICAKLLPVAHTSSVTKERAILLYAIATKRSVDVGKVIHK 212

Query: 64  SMRRIRRGATTVGLGHPSLITALCRAAGIFVDPREEISHPAGVIDGNFIM 114
           S+  IR+   T GLGH SLITALCR  G+  + +EE+  P  ++D NFIM
Sbjct: 213 SLCNIRKSGMTGGLGHSSLITALCRNEGVVWNEKEELVDPKPIMDKNFIM 262

[Close]

BLAST of Lag0025684 vs. NCBI nr
Match: XP_008458668.1 (PREDICTED: uncharacterized protein LOC103497996 [Cucumis melo])

HSP 1 Score: 128.3 bits (321), Expect = 6.2e-26
Identity = 63/110 (57.27%), Postives = 79/110 (71.82%), Query Frame = 0


Query: 4   GEAINFKSSDLTVDNRAWNSFLCAKLMPMMHLHDVTKERAALLVAIAIDRNVDVGKVIYA 63
           GE I FKSS+LTV N+ W+ F+CAKL+P+ H   VTKERA LL AIA  R+VDVGKVI+ 
Sbjct: 91  GEPIRFKSSNLTVSNQVWHKFICAKLLPVAHTSSVTKERAILLYAIATKRSVDVGKVIHK 150

Query: 64  SMRRIRRGATTVGLGHPSLITALCRAAGIFVDPREEISHPAGVIDGNFIM 114
           S+  IR+   T GLGH SLITALCR  G+  + +EE+  P  ++D NFIM
Sbjct: 151 SLCNIRKSGMTGGLGHSSLITALCRNEGVVWNEKEELVDPKPIMDKNFIM 200

[Close]

BLAST of Lag0025684 vs. NCBI nr
Match: KGN46897.1 (hypothetical protein Csa_020731 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 5.3e-25
Identity = 62/110 (56.36%), Postives = 78/110 (70.91%), Query Frame = 0


Query: 4   GEAINFKSSDLTVDNRAWNSFLCAKLMPMMHLHDVTKERAALLVAIAIDRNVDVGKVIYA 63
           GE I FKSS+LTV N+ W+ F+CAKL+P+ H   VTKERA LL AIA  R+VDVGKVI  
Sbjct: 153 GEPIRFKSSNLTVSNQVWHKFICAKLLPVAHTSSVTKERAILLYAIATKRSVDVGKVIQK 212

Query: 64  SMRRIRRGATTVGLGHPSLITALCRAAGIFVDPREEISHPAGVIDGNFIM 114
           S+  IR+   T GLGH SLITALCR  G+  + +EE+  P  ++D +FIM
Sbjct: 213 SLCNIRKSGMTGGLGHSSLITALCRNEGVVWNEKEELVDPKPIMDKSFIM 262

[Close]

BLAST of Lag0025684 vs. NCBI nr
Match: PIM97147.1 (hypothetical protein CDL12_30385 [Handroanthus impetiginosus])

HSP 1 Score: 82.4 bits (202), Expect = 3.9e-12
Identity = 48/133 (36.09%), Postives = 69/133 (51.88%), Query Frame = 0


Query: 2   RRGEAINFKSSDLTVDNRAWNSFLCAKLMPMMHLHDVTKERAALLVAIAIDRNVDVGKVI 61
           R  E I+F  + LT     W  F+ A+L+P  H   VT+ERA ++ AI  D   D+G+ +
Sbjct: 47  RLNEPIHFPRTTLTFAADNWLRFVSARLLPSSHTSKVTRERAVMIYAILTDVPFDIGRFL 106

Query: 62  YASMRRIRRGATTVGLGHPSLITALCRAAGIFVDPREEISHPAGVIDGNFIMIRFREHGP 121
           + S+ +   G  TVGL HPSLIT LC  AG+   P +E+  P         MIR     P
Sbjct: 107 HKSILKSAMGGLTVGLYHPSLITELCARAGLEQQPGDELLQPDS-------MIRADRRPP 166

Query: 122 RITHSPPPTQQEE 135
           R   +P   +Q++
Sbjct: 167 RQAGAPVQPRQQQ 172

[Close]

BLAST of Lag0025684 vs. NCBI nr
Match: KZM94204.1 (hypothetical protein DCAR_017447 [Daucus carota subsp. sativus])

HSP 1 Score: 82.4 bits (202), Expect = 3.9e-12
Identity = 39/106 (36.79%), Postives = 65/106 (61.32%), Query Frame = 0


Query: 7   INFKSSDLTVDNRAWNSFLCAKLMPMMHLHDVTKERAALLVAIAIDRNVDVGKVIYASMR 66
           ++F ++ L    +AWN+F+CA +MP  H H+VT +RA LL  I   + +D+G VI+  + 
Sbjct: 175 VSFPAAALNRYAKAWNAFICANIMPSSHGHEVTVDRAILLFGIVSGKYIDLGHVIHQGIL 234

Query: 67  RIRRGATTVGLGHPSLITALCRAAGIFVDPREEISHPAGVIDGNFI 113
           R  +G TT  + + +++T LCRA+G+     E++  PA  ID + I
Sbjct: 235 RFLQGGTTGAIPYGTIVTKLCRASGVRWPANEQLQLPAAPIDHSAI 280

The following BLAST results are available for this feature:

BLAST of Lag0025684 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033353.1	6.2e-26	57.27	putative S-locus lectin protein kinase family protein [Cucumis melo var. makuwa]...	[more]
XP_008458668.1	6.2e-26	57.27	PREDICTED: uncharacterized protein LOC103497996 [Cucumis melo]	[more]
KGN46897.1	5.3e-25	56.36	hypothetical protein Csa_020731 [Cucumis sativus]	[more]
PIM97147.1	3.9e-12	36.09	hypothetical protein CDL12_30385 [Handroanthus impetiginosus]	[more]
KZM94204.1	3.9e-12	36.79	hypothetical protein DCAR_017447 [Daucus carota subsp. sativus]	[more]

BLAST of Lag0025684 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 155..163
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 131..145
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0025684.1	Lag0025684.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006561	proline biosynthetic process
cellular_component	GO:0005829	cytosol
molecular_function	GO:0004349	glutamate 5-kinase activity