Lag0025652 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0025652
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Gag-pro-like protein
Location	chr10: 17104688 .. 17105032 (+)
RNA-Seq Expression	Lag0025652
Synteny	Lag0025652

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAGCAAGACAAGGATATGGAGAAAATGAAACAAGAGATCAATAATCTTAGTGAACAAGTAGCGAAAATTCTAGAATTACTTTCAATTGGAAAAGGAAAAGGGGTTGTAGAAGCAACACATGCAAGCAATCCAATCCAAGAAATCGACGATCCTACTTATCCACAAGGATACTCCTCAACATATAAGACAACGCATACATGTTCCACAGTCACAAACTACCCAACAATATGTTGCTATGAATCCACTCTACATTGTTCCTCCTCTTGTCCCAGATATAGAGCAGTTGGAAGCTCAAGTGGAATTCAAATCCATAATATGACAACGTCTGGTCAACAATAG

mRNA sequence

ATGGAAGAGCAAGACAAGGATATGGAGAAAATGAAACAAGAGATCAATAATCTTAGTGAACAAGTAGCGAAAATTCTAGAATTACTTTCAATTGGAAAAGGAAAAGGGGTTGTAGAAGCAACACATGCAAGCAATCCAATCCAAGAAATCGACGATCCTACTTATCCACAAGGATACTCCTCAACATATAAGACAACGCATACATGTTCCACAGTCACAAACTACCCAACAATATGTTGCTATGAATCCACTCTACATTGTTCCTCCTCTTGTCCCAGATATAGAGCAGTTGGAAGCTCAAGTGGAATTCAAATCCATAATATGACAACGTCTGGTCAACAATAG

Coding sequence (CDS)

ATGGAAGAGCAAGACAAGGATATGGAGAAAATGAAACAAGAGATCAATAATCTTAGTGAACAAGTAGCGAAAATTCTAGAATTACTTTCAATTGGAAAAGGAAAAGGGGTTGTAGAAGCAACACATGCAAGCAATCCAATCCAAGAAATCGACGATCCTACTTATCCACAAGGATACTCCTCAACATATAAGACAACGCATACATGTTCCACAGTCACAAACTACCCAACAATATGTTGCTATGAATCCACTCTACATTGTTCCTCCTCTTGTCCCAGATATAGAGCAGTTGGAAGCTCAAGTGGAATTCAAATCCATAATATGACAACGTCTGGTCAACAATAG

Protein sequence

MEEQDKDMEKMKQEINNLSEQVAKILELLSIGKGKGVVEATHASNPIQEIDDPTYPQGYSSTYKTTHTCSTVTNYPTICCYESTLHCSSSCPRYRAVGSSSGIQIHNMTTSGQQ

Homology

[Close]

BLAST of Lag0025652 vs. NCBI nr
Match: TYK27304.1 (uncharacterized protein E5676_scaffold1784G00170 [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 2.2e-14
Identity = 45/75 (60.00%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 1  MEEQDKDMEKMKQEINNLSEQVAKILELLSIGKGKGVVEATHASNPIQEIDDPTYPQGYS 60
          MEE+DKDM+KM+QEINNL EQV+KILELLS+GKGK  V+ T +SNPIQ+IDDP +P G++
Sbjct: 1  MEEKDKDMDKMRQEINNLGEQVSKILELLSMGKGKAAVDTTRSSNPIQDIDDPIFPPGFT 60

Query: 61 STYKTTHTCSTVTNY 76
          S +       T  +Y
Sbjct: 61 SFHINVPQSQTTQHY 75

[Close]

BLAST of Lag0025652 vs. NCBI nr
Match: KAA0042502.1 (putative RNA-directed DNA polymerase [Cucumis melo var. makuwa] >TYK22872.1 putative RNA-directed DNA polymerase [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 3.8e-14
Identity = 45/75 (60.00%), Postives = 57/75 (76.00%), Query Frame = 0


Query: 1  MEEQDKDMEKMKQEINNLSEQVAKILELLSIGKGKGVVEATHASNPIQEIDDPTYPQGYS 60
          M+EQDKDM+KM+QEINNL EQV+KILELLS+GKGK VV+ T +SNPIQ+ DDP YP G++
Sbjct: 1  MKEQDKDMDKMRQEINNLGEQVSKILELLSMGKGKVVVDTTQSSNPIQDTDDPIYPPGFT 60

Query: 61 STYKTTHTCSTVTNY 76
            +       T  +Y
Sbjct: 61 PCHMNVPQSQTTQHY 75

[Close]

BLAST of Lag0025652 vs. NCBI nr
Match: KAA0045013.1 (Gag-pro-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 5.0e-14
Identity = 45/75 (60.00%), Postives = 56/75 (74.67%), Query Frame = 0


Query: 1  MEEQDKDMEKMKQEINNLSEQVAKILELLSIGKGKGVVEATHASNPIQEIDDPTYPQGYS 60
          MEEQDKDM+KM+QEINNL EQV KILELLS+GKGK VV+   +SNPIQ+ DDP YP G++
Sbjct: 1  MEEQDKDMDKMRQEINNLREQVLKILELLSMGKGKVVVDTAQSSNPIQDTDDPIYPPGFT 60

Query: 61 STYKTTHTCSTVTNY 76
            +       T+ +Y
Sbjct: 61 QYHMNVPQSQTIQHY 75

[Close]

BLAST of Lag0025652 vs. NCBI nr
Match: KAA0036933.1 (uncharacterized protein E6C27_scaffold86G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 5.0e-14
Identity = 42/60 (70.00%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 1   MEEQDKDMEKMKQEINNLSEQVAKILELLSIGKGKGVVEATHASNPIQEIDDPTYPQGYS 60
           MEE+DKDM+KM+QEINNL EQV+KILELLS+GKGK  V+ T +SNPIQ+ DDP YP G++
Sbjct: 568 MEEKDKDMDKMRQEINNLGEQVSKILELLSMGKGKAAVDTTQSSNPIQDTDDPIYPPGFT 627

[Close]

BLAST of Lag0025652 vs. NCBI nr
Match: KAA0037781.1 (uncharacterized protein E6C27_scaffold471G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 87.8 bits (216), Expect = 6.5e-14
Identity = 44/75 (58.67%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 1  MEEQDKDMEKMKQEINNLSEQVAKILELLSIGKGKGVVEATHASNPIQEIDDPTYPQGYS 60
          MEE+DKDM+KM++EINNL EQV+KILELLS+GKGK  V+ T +SNPIQ+IDDP +P G++
Sbjct: 1  MEEKDKDMDKMRKEINNLGEQVSKILELLSMGKGKAAVDTTRSSNPIQDIDDPIFPPGFT 60

Query: 61 STYKTTHTCSTVTNY 76
          S +       T  +Y
Sbjct: 61 SFHINVPQSQTTQHY 75

The following BLAST results are available for this feature:

BLAST of Lag0025652 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK27304.1	2.2e-14	60.00	uncharacterized protein E5676_scaffold1784G00170 [Cucumis melo var. makuwa]	[more]
KAA0042502.1	3.8e-14	60.00	putative RNA-directed DNA polymerase [Cucumis melo var. makuwa] >TYK22872.1 puta...	[more]
KAA0045013.1	5.0e-14	60.00	Gag-pro-like protein [Cucumis melo var. makuwa]	[more]
KAA0036933.1	5.0e-14	70.00	uncharacterized protein E6C27_scaffold86G00060 [Cucumis melo var. makuwa]	[more]
KAA0037781.1	6.5e-14	58.67	uncharacterized protein E6C27_scaffold471G00160 [Cucumis melo var. makuwa]	[more]

BLAST of Lag0025652 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1..28

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0025652.1	Lag0025652.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity