Lag0023320 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0023320
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	DExH-box ATP-dependent RNA helicase DExH11
Location	chr7: 47157629 .. 47159815 (+)
RNA-Seq Expression	Lag0023320
Synteny	Lag0023320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTTTAGAAGCTTCAATTAAGCTTCTGGATATTCTGATGTGAAGAACTGTAATAGGATTCTCATGGTTCTAAGAGATAAGAATCTCGTGAGTAAAGCTAAAAACATGTATAGAATGATGGAACAGTGGGTTGCGGTTGGCTGGCAGCGGAAAACCCACTAAGTGTCTTGGATGGCAACAGAAGGAAAAAACCACAAAGTGCCCTGAGACCAGAAACCCACGAAGCAAAGCAGTGTGTCGAGTTGTTGCTGACAGAAAAATAGACGTGGTAGTGGGTTTTGCTCCGGGCTGCGACGGTGATGAGCTCTGCTCCGAGTTGCGGCGGCGATCAACGAACAAAGAACGACGGCTAGGGTGAAGGCAAAACACGATGAGACTTCGAACAAGATGATGTAGCAACGGAAATGTATGGGTGTAGGAAAAACACGAAACCACCGGAAGTAGGGTGCACCAGTCAAGAATGGCGGCTAGGAGAGAGACCCATTACAATAAAAGTAAAGAATAAAGGCAATAATGACTAAATATTAACAAATAATATTTACACAATTATAGAAACTAGCTAGTATAATAAAAAAGGCTTTGGAGCTTGTCATAAGTGTTGAAATCTTATTGTCATACTCTAATCTCATGTTTATGGGAAAGGACTAGCTTTAAAACTTCATTGATGGATCCTGTTTCCGAGAATTTATATTTTTCTTCGAGAGGTAAAGGACCAAATCATTTTAAGAAATAAAGTTTTTGATTGGACTATTAATAAAATCGAAGGACCCTTAACTATTAAGGGATTAATAGAACGAATTACACTTTTACCACTAACTATTGCAGTATCCGCTGCAATGCAAATGGCCTTTTGTCGAAGACAAAAATAAGTAGTAGTAATAAGTAATAAAAAGATTGGATCAAAAAAGAATCATGAAAATTCGAGCATTGATGTATTTACGTCCGGGCGACTAATGAGATTAATAAAAGAGACTCATTTTAATTAAATAAATAACAATTTTTTTTATTCTAGTAAAGTAATAAAGAATAATAATAAGAATGAATCTTGATTCTATATCATCTACCAATATATCATTCTAATAGTTGGAATTATGTAATGTTAAGGTGGTTTGCTTTTTCTTATTTCATTTGTTTTAAATTTGAAGTCATTGGGCATGAATAAATCATTGATGGCTTTTACAGATTCTAATGAACGCATAATAAATGGCTCATAAATCTGTTTGTCGGCTGTAGATGTATTAAAGGTGAGCCAACCATTGAGGAATACTACGACTTATATGCTGAAGCTGAGAAGCATAACAACCAGATCTTAGAAGCAGTCATGCAATCGTCTGCAATTCAACAATTTCTTACTCCTGGAAGAGTGGTCGTTGTAAAATCACAGTCTGTGAGTTCTTATGACAATATTCAAATAAATGTACAAAATGATATGATGTGAACTTCCATTTATATTCCATTTTCACCTCTGATTTTTTTTTTTGTTTATATTTTTACACCTAATCAATACATAGGTACTAAACTCAGATTTCACTCTTGCCAGGCCAAAGATCACTTACTTGCAGTCATTGTCAAACCCCTTCCCATGGTTAGCAGGCAATATATTGTTTTGGTGCTGAAACCTGATTCACCACCTGTTCAAAGTTCTTCAAGTGGTGATGTAGAAAAGAAAAAAGAGGATTTCCCCCAAGGTTACTTTATGGTACCAAAGTCAAAACGTGGTCTTGAAAATGATTATTATTCTCCATCTACACGTAAAGCATCTGGTGTCGTGAATATAAGATTACCACATGCTGGTGCAGCAGCAGGCGTAAGTTATGAGGTTAGAGGAGTTGATGCCAAAGAATTTTTGTGTGTATGCAATAAAAAGATAAAATTAGATCCAGGTAGGCTTCTTGAAGAAGTAAGCAATGTTGCCTACTCCCAAACTGTTCAACAGCTTTTGGATATAAAATCTGATGGGAAGCACCCTCCTGCCTTAGATCCGTTAAAAGGTAGCACCTTCATTACCTTTATATAAACGTGACACACAATGTTCTGCAGTGGTAAATCACTTGACATATTGTGCATCCATTCTTATTCAACAGATATGTAACTTTTGGATGCACGCTTTTCTCAATGAACTGTGCATATTTCTGTTACAGTTAAGTTTCCTACTTTTATTTCCTTTCTTTTGATGGGAGTTTAA

mRNA sequence

ATGTGTTTAGAAGCTTCAATTAAGCTTCTGGATATTCTGATTGGGTTGCGGTTGGCTGGCAGCGGAAAACCCACTAAGTGTCTTGGATGGCAACAGAAGGAAAAAACCACAAAGTGCCCTGAGACCAGAAACCCACGAAGCAAAGCAGTGTGTCGAGTTGTTGCTGACAGAAAAATAGACGTGGTAGTGGGTTTTGCTCCGGGCTGCGACGGTGATGAGCTCTGCTCCGAGTTGCGGCGGCGATCAACGAACAAAGAACGACGGCTAGGATGTATTAAAGGTGAGCCAACCATTGAGGAATACTACGACTTATATGCTGAAGCTGAGAAGCATAACAACCAGATCTTAGAAGCAGTCATGCAATCGTCTGCAATTCAACAATTTCTTACTCCTGGAAGAGTGGTCGTTGTAAAATCACAGTCTGCCAAAGATCACTTACTTGCAGTCATTGTCAAACCCCTTCCCATGGTTAGCAGGCAATATATTGTTTTGGTGCTGAAACCTGATTCACCACCTGTTCAAAGTTCTTCAAGTGGTGATGTAGAAAAGAAAAAAGAGGATTTCCCCCAAGGTTACTTTATGGTACCAAAGTCAAAACGTGGTCTTGAAAATGATTATTATTCTCCATCTACACGTAAAGCATCTGGTGTCGTGAATATAAGATTACCACATGCTGGTGCAGCAGCAGGCGTAAGTTATGAGGTTAGAGGAGTTGATGCCAAAGAATTTTTGTGTGTATGCAATAAAAAGATAAAATTAGATCCAGGTAGGCTTCTTGAAGAAGTAAGCAATGTTGCCTACTCCCAAACTGTTCAACAGCTTTTGGATATAAAATCTGATGGGAAGCACCCTCCTGCCTTAGATCCGTTAAAAGTTAAGTTTCCTACTTTTATTTCCTTTCTTTTGATGGGAGTTTAA

Coding sequence (CDS)

ATGTGTTTAGAAGCTTCAATTAAGCTTCTGGATATTCTGATTGGGTTGCGGTTGGCTGGCAGCGGAAAACCCACTAAGTGTCTTGGATGGCAACAGAAGGAAAAAACCACAAAGTGCCCTGAGACCAGAAACCCACGAAGCAAAGCAGTGTGTCGAGTTGTTGCTGACAGAAAAATAGACGTGGTAGTGGGTTTTGCTCCGGGCTGCGACGGTGATGAGCTCTGCTCCGAGTTGCGGCGGCGATCAACGAACAAAGAACGACGGCTAGGATGTATTAAAGGTGAGCCAACCATTGAGGAATACTACGACTTATATGCTGAAGCTGAGAAGCATAACAACCAGATCTTAGAAGCAGTCATGCAATCGTCTGCAATTCAACAATTTCTTACTCCTGGAAGAGTGGTCGTTGTAAAATCACAGTCTGCCAAAGATCACTTACTTGCAGTCATTGTCAAACCCCTTCCCATGGTTAGCAGGCAATATATTGTTTTGGTGCTGAAACCTGATTCACCACCTGTTCAAAGTTCTTCAAGTGGTGATGTAGAAAAGAAAAAAGAGGATTTCCCCCAAGGTTACTTTATGGTACCAAAGTCAAAACGTGGTCTTGAAAATGATTATTATTCTCCATCTACACGTAAAGCATCTGGTGTCGTGAATATAAGATTACCACATGCTGGTGCAGCAGCAGGCGTAAGTTATGAGGTTAGAGGAGTTGATGCCAAAGAATTTTTGTGTGTATGCAATAAAAAGATAAAATTAGATCCAGGTAGGCTTCTTGAAGAAGTAAGCAATGTTGCCTACTCCCAAACTGTTCAACAGCTTTTGGATATAAAATCTGATGGGAAGCACCCTCCTGCCTTAGATCCGTTAAAAGTTAAGTTTCCTACTTTTATTTCCTTTCTTTTGATGGGAGTTTAA

Protein sequence

MCLEASIKLLDILIGLRLAGSGKPTKCLGWQQKEKTTKCPETRNPRSKAVCRVVADRKIDVVVGFAPGCDGDELCSELRRRSTNKERRLGCIKGEPTIEEYYDLYAEAEKHNNQILEAVMQSSAIQQFLTPGRVVVVKSQSAKDHLLAVIVKPLPMVSRQYIVLVLKPDSPPVQSSSSGDVEKKKEDFPQGYFMVPKSKRGLENDYYSPSTRKASGVVNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKIKLDPGRLLEEVSNVAYSQTVQQLLDIKSDGKHPPALDPLKVKFPTFISFLLMGV

Homology

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BLAST of Lag0023320 vs. NCBI nr
Match: XP_022150906.1 (DExH-box ATP-dependent RNA helicase DExH11 [Momordica charantia])

HSP 1 Score: 369.0 bits (946), Expect = 3.9e-98
Identity = 187/214 (87.38%), Postives = 197/214 (92.06%), Query Frame = 0


Query: 78   LRRRSTNKERRLGCIKGEPTIEEYYDLYAEAEKHNNQILEAVMQSSAIQQFLTPGRVVVV 137
            L R+     R + CIKGEPTIEEYYDLYA AEKH+NQI EAVMQSSA+QQFLT GRVVVV
Sbjct: 877  LMRKLAQPTRIVECIKGEPTIEEYYDLYAVAEKHSNQISEAVMQSSAVQQFLTAGRVVVV 936

Query: 138  KSQSAKDHLLAVIVKPLPMVSRQYIVLVLKPDSPPVQSSSSGDVEKKKEDFPQGYFMVPK 197
            KS SAKDHLLAVIVK L M S+QYIVLVLKPDSPPVQSSSSGD++KKKEDFPQGYFMVPK
Sbjct: 937  KSPSAKDHLLAVIVKALSMASKQYIVLVLKPDSPPVQSSSSGDLDKKKEDFPQGYFMVPK 996

Query: 198  SKRGLENDYYSPSTRKASGVVNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKIKLDPGR 257
            SKRGLENDYYSPSTRK SGVVNIRLPH GAAAGVSYEVRGVDAKEFLC+CNKKIKLDPGR
Sbjct: 997  SKRGLENDYYSPSTRKGSGVVNIRLPHGGAAAGVSYEVRGVDAKEFLCICNKKIKLDPGR 1056

Query: 258  LLEEVSNVAYSQTVQQLLDIKSDGKHPPALDPLK 292
            LLEEVSNVAYSQTVQQLLDIKSDGK+PPALDP+K
Sbjct: 1057 LLEEVSNVAYSQTVQQLLDIKSDGKYPPALDPVK 1090

[Close]

BLAST of Lag0023320 vs. NCBI nr
Match: XP_023524999.1 (DExH-box ATP-dependent RNA helicase DExH11 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023525000.1 DExH-box ATP-dependent RNA helicase DExH11 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 366.3 bits (939), Expect = 2.5e-97
Identity = 186/214 (86.92%), Postives = 197/214 (92.06%), Query Frame = 0


Query: 78  LRRRSTNKERRLGCIKGEPTIEEYYDLYAEAEKHNNQILEAVMQSSAIQQFLTPGRVVVV 137
           L R+     R + CIKGEP IEEYYDLYAEAEK++NQI EAVMQSSAIQQFLTPGRVVVV
Sbjct: 629 LMRKLAQPTRTVECIKGEPAIEEYYDLYAEAEKNSNQISEAVMQSSAIQQFLTPGRVVVV 688

Query: 138 KSQSAKDHLLAVIVKPLPMVSRQYIVLVLKPDSPPVQSSSSGDVEKKKEDFPQGYFMVPK 197
           KSQS KDHLL+VIVK LPM SRQYIVLVLKPDSPPVQSSSS D +KKKEDFPQGYFMVPK
Sbjct: 689 KSQSDKDHLLSVIVKALPMASRQYIVLVLKPDSPPVQSSSSDDSDKKKEDFPQGYFMVPK 748

Query: 198 SKRGLENDYYSPSTRKASGVVNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKIKLDPGR 257
           SKRGLENDYYSPSTRK SG+VNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKI+L+PGR
Sbjct: 749 SKRGLENDYYSPSTRKGSGIVNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKIQLNPGR 808

Query: 258 LLEEVSNVAYSQTVQQLLDIKSDGKHPPALDPLK 292
           LLE+V+NVAYSQTVQQLLDIKSDGK PPALDPLK
Sbjct: 809 LLEDVNNVAYSQTVQQLLDIKSDGKFPPALDPLK 842

[Close]

BLAST of Lag0023320 vs. NCBI nr
Match: XP_023525002.1 (DExH-box ATP-dependent RNA helicase DExH11 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023525003.1 DExH-box ATP-dependent RNA helicase DExH11 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 366.3 bits (939), Expect = 2.5e-97
Identity = 186/214 (86.92%), Postives = 197/214 (92.06%), Query Frame = 0


Query: 78  LRRRSTNKERRLGCIKGEPTIEEYYDLYAEAEKHNNQILEAVMQSSAIQQFLTPGRVVVV 137
           L R+     R + CIKGEP IEEYYDLYAEAEK++NQI EAVMQSSAIQQFLTPGRVVVV
Sbjct: 625 LMRKLAQPTRTVECIKGEPAIEEYYDLYAEAEKNSNQISEAVMQSSAIQQFLTPGRVVVV 684

Query: 138 KSQSAKDHLLAVIVKPLPMVSRQYIVLVLKPDSPPVQSSSSGDVEKKKEDFPQGYFMVPK 197
           KSQS KDHLL+VIVK LPM SRQYIVLVLKPDSPPVQSSSS D +KKKEDFPQGYFMVPK
Sbjct: 685 KSQSDKDHLLSVIVKALPMASRQYIVLVLKPDSPPVQSSSSDDSDKKKEDFPQGYFMVPK 744

Query: 198 SKRGLENDYYSPSTRKASGVVNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKIKLDPGR 257
           SKRGLENDYYSPSTRK SG+VNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKI+L+PGR
Sbjct: 745 SKRGLENDYYSPSTRKGSGIVNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKIQLNPGR 804

Query: 258 LLEEVSNVAYSQTVQQLLDIKSDGKHPPALDPLK 292
           LLE+V+NVAYSQTVQQLLDIKSDGK PPALDPLK
Sbjct: 805 LLEDVNNVAYSQTVQQLLDIKSDGKFPPALDPLK 838

[Close]

BLAST of Lag0023320 vs. NCBI nr
Match: XP_038896038.1 (DExH-box ATP-dependent RNA helicase DExH11 isoform X2 [Benincasa hispida])

HSP 1 Score: 364.8 bits (935), Expect = 7.4e-97
Identity = 186/214 (86.92%), Postives = 196/214 (91.59%), Query Frame = 0


Query: 78   LRRRSTNKERRLGCIKGEPTIEEYYDLYAEAEKHNNQILEAVMQSSAIQQFLTPGRVVVV 137
            L R+     R + CIKGEPTIEEYY+LYAEAEK +NQI EAVMQSSAIQQFLTPGRVV++
Sbjct: 877  LMRKLAQPTRTVECIKGEPTIEEYYELYAEAEKPSNQISEAVMQSSAIQQFLTPGRVVII 936

Query: 138  KSQSAKDHLLAVIVKPLPMVSRQYIVLVLKPDSPPVQSSSSGDVEKKKEDFPQGYFMVPK 197
            KSQSAKDHLL VIVK L +VSRQYIVLVLKPDSPPVQSSSSGD+EKK ED  QGYFMVPK
Sbjct: 937  KSQSAKDHLLGVIVKALSIVSRQYIVLVLKPDSPPVQSSSSGDLEKKMEDLSQGYFMVPK 996

Query: 198  SKRGLENDYYSPSTRKASGVVNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKIKLDPGR 257
            SKRGLENDYYSPSTRK SGVVNIRLPHAGAA GVSYEVRGVDAKEFLCVC+KKIKLDPGR
Sbjct: 997  SKRGLENDYYSPSTRKGSGVVNIRLPHAGAAVGVSYEVRGVDAKEFLCVCSKKIKLDPGR 1056

Query: 258  LLEEVSNVAYSQTVQQLLDIKSDGKHPPALDPLK 292
            LLEEVSNVAYSQTVQQLLDIKSDGK+PPALDPLK
Sbjct: 1057 LLEEVSNVAYSQTVQQLLDIKSDGKYPPALDPLK 1090

[Close]

BLAST of Lag0023320 vs. NCBI nr
Match: KAG7036972.1 (DExH-box ATP-dependent RNA helicase DExH11, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 364.8 bits (935), Expect = 7.4e-97
Identity = 186/214 (86.92%), Postives = 196/214 (91.59%), Query Frame = 0


Query: 78  LRRRSTNKERRLGCIKGEPTIEEYYDLYAEAEKHNNQILEAVMQSSAIQQFLTPGRVVVV 137
           L R+     R + CIKGEP IEEYYDLYAEAEK++NQ+ EAVMQSSAIQQFLTPGRVVVV
Sbjct: 382 LMRKLAQPTRTVECIKGEPAIEEYYDLYAEAEKNSNQVSEAVMQSSAIQQFLTPGRVVVV 441

Query: 138 KSQSAKDHLLAVIVKPLPMVSRQYIVLVLKPDSPPVQSSSSGDVEKKKEDFPQGYFMVPK 197
           KSQS KDHLL+VIVK LPM SRQYIVLVLKPDSPPVQSSSS D  KKKEDFPQGYFMVPK
Sbjct: 442 KSQSDKDHLLSVIVKALPMASRQYIVLVLKPDSPPVQSSSSDDSVKKKEDFPQGYFMVPK 501

Query: 198 SKRGLENDYYSPSTRKASGVVNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKIKLDPGR 257
           SKRGLENDYYSPSTRK SGVVNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKI+L+PGR
Sbjct: 502 SKRGLENDYYSPSTRKGSGVVNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKIQLNPGR 561

Query: 258 LLEEVSNVAYSQTVQQLLDIKSDGKHPPALDPLK 292
           LLE+V+NVAYSQTVQQLLDIKSDGK PPALDPLK
Sbjct: 562 LLEDVNNVAYSQTVQQLLDIKSDGKFPPALDPLK 595

[Close]

BLAST of Lag0023320 vs. ExPASy Swiss-Prot
Match: F4JAA5 (DExH-box ATP-dependent RNA helicase DExH11 OS=Arabidopsis thaliana OX=3702 GN=SKI2 PE=1 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.7e-56
Identity = 114/207 (55.07%), Postives = 150/207 (72.46%), Query Frame = 0


Query: 87   RRLGCIKGEPTIEEYYDLYAEAEKHNNQILEAVMQSSAIQQFLTPGRVVVVKSQSAKDHL 146
            + + CIKGEP IE+YYD+Y EA ++NN++ EAVMQS   Q FL  GRVVV+KS    D+L
Sbjct: 878  KHIECIKGEPAIEDYYDMYMEANEYNNKMSEAVMQSPYAQSFLVQGRVVVMKSGMGIDNL 937

Query: 147  LAVIVKPLPMVSRQYIVLVLKPDSPPVQSSSSGDVEKKKEDFPQGYFMVPKSKRGLENDY 206
            L +++K     +RQY+VLV+K + PP + +    + KK  D  QGYF+ PKSKRG E ++
Sbjct: 938  LGIVLKGPSNTNRQYVVLVIKSEIPPPEKNMV-SIGKKSSDPSQGYFIAPKSKRGFEEEF 997

Query: 207  YS-PSTRKASGVVNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKIKLDPGRLLEEVSNV 266
            Y+ PS+RK   V+ I LP+ G AAGV YEV+G D KEFLC+C+ KIK+D  RLLE+ +  
Sbjct: 998  YTKPSSRKGPVVIKIELPYHGVAAGVGYEVKGFDNKEFLCICDSKIKIDQVRLLEDGNKA 1057

Query: 267  AYSQTVQQLLDIKSDG-KHPPALDPLK 292
            A+SQTVQQLLD+KSDG K PPALDP+K
Sbjct: 1058 AFSQTVQQLLDLKSDGNKFPPALDPVK 1083

[Close]

BLAST of Lag0023320 vs. ExPASy TrEMBL
Match: A0A6J1DCW3 (DExH-box ATP-dependent RNA helicase DExH11 OS=Momordica charantia OX=3673 GN=LOC111018945 PE=4 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.9e-98
Identity = 187/214 (87.38%), Postives = 197/214 (92.06%), Query Frame = 0


Query: 78   LRRRSTNKERRLGCIKGEPTIEEYYDLYAEAEKHNNQILEAVMQSSAIQQFLTPGRVVVV 137
            L R+     R + CIKGEPTIEEYYDLYA AEKH+NQI EAVMQSSA+QQFLT GRVVVV
Sbjct: 877  LMRKLAQPTRIVECIKGEPTIEEYYDLYAVAEKHSNQISEAVMQSSAVQQFLTAGRVVVV 936

Query: 138  KSQSAKDHLLAVIVKPLPMVSRQYIVLVLKPDSPPVQSSSSGDVEKKKEDFPQGYFMVPK 197
            KS SAKDHLLAVIVK L M S+QYIVLVLKPDSPPVQSSSSGD++KKKEDFPQGYFMVPK
Sbjct: 937  KSPSAKDHLLAVIVKALSMASKQYIVLVLKPDSPPVQSSSSGDLDKKKEDFPQGYFMVPK 996

Query: 198  SKRGLENDYYSPSTRKASGVVNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKIKLDPGR 257
            SKRGLENDYYSPSTRK SGVVNIRLPH GAAAGVSYEVRGVDAKEFLC+CNKKIKLDPGR
Sbjct: 997  SKRGLENDYYSPSTRKGSGVVNIRLPHGGAAAGVSYEVRGVDAKEFLCICNKKIKLDPGR 1056

Query: 258  LLEEVSNVAYSQTVQQLLDIKSDGKHPPALDPLK 292
            LLEEVSNVAYSQTVQQLLDIKSDGK+PPALDP+K
Sbjct: 1057 LLEEVSNVAYSQTVQQLLDIKSDGKYPPALDPVK 1090

[Close]

BLAST of Lag0023320 vs. ExPASy TrEMBL
Match: A0A6J1G9Z1 (DExH-box ATP-dependent RNA helicase DExH11 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111452275 PE=4 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 8.0e-97
Identity = 185/214 (86.45%), Postives = 196/214 (91.59%), Query Frame = 0


Query: 78   LRRRSTNKERRLGCIKGEPTIEEYYDLYAEAEKHNNQILEAVMQSSAIQQFLTPGRVVVV 137
            L R+     R + CIKGEP IEEYYDLYAEAEK++NQ+ EAVMQSSAIQQFLTPGRVVVV
Sbjct: 873  LMRKLAQPTRTVECIKGEPAIEEYYDLYAEAEKNSNQVSEAVMQSSAIQQFLTPGRVVVV 932

Query: 138  KSQSAKDHLLAVIVKPLPMVSRQYIVLVLKPDSPPVQSSSSGDVEKKKEDFPQGYFMVPK 197
            KSQS KDHLL+VIVK LPM SRQYIVLVLKPDSPPVQSSSS D  KKKEDFPQGYFMVPK
Sbjct: 933  KSQSDKDHLLSVIVKALPMASRQYIVLVLKPDSPPVQSSSSDDSVKKKEDFPQGYFMVPK 992

Query: 198  SKRGLENDYYSPSTRKASGVVNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKIKLDPGR 257
            SKRGLENDYYSPSTRK SGVVNIRLPHAGAAAGVSYEVRGVDAKEF+CVCNKKI+L+PGR
Sbjct: 993  SKRGLENDYYSPSTRKGSGVVNIRLPHAGAAAGVSYEVRGVDAKEFVCVCNKKIQLNPGR 1052

Query: 258  LLEEVSNVAYSQTVQQLLDIKSDGKHPPALDPLK 292
            LLE+V+NVAYSQTVQQLLDIKSDGK PPALDPLK
Sbjct: 1053 LLEDVNNVAYSQTVQQLLDIKSDGKFPPALDPLK 1086

[Close]

BLAST of Lag0023320 vs. ExPASy TrEMBL
Match: A0A6J1GAJ6 (DExH-box ATP-dependent RNA helicase DExH11 isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111452275 PE=4 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 8.0e-97
Identity = 185/214 (86.45%), Postives = 196/214 (91.59%), Query Frame = 0


Query: 78   LRRRSTNKERRLGCIKGEPTIEEYYDLYAEAEKHNNQILEAVMQSSAIQQFLTPGRVVVV 137
            L R+     R + CIKGEP IEEYYDLYAEAEK++NQ+ EAVMQSSAIQQFLTPGRVVVV
Sbjct: 869  LMRKLAQPTRTVECIKGEPAIEEYYDLYAEAEKNSNQVSEAVMQSSAIQQFLTPGRVVVV 928

Query: 138  KSQSAKDHLLAVIVKPLPMVSRQYIVLVLKPDSPPVQSSSSGDVEKKKEDFPQGYFMVPK 197
            KSQS KDHLL+VIVK LPM SRQYIVLVLKPDSPPVQSSSS D  KKKEDFPQGYFMVPK
Sbjct: 929  KSQSDKDHLLSVIVKALPMASRQYIVLVLKPDSPPVQSSSSDDSVKKKEDFPQGYFMVPK 988

Query: 198  SKRGLENDYYSPSTRKASGVVNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKIKLDPGR 257
            SKRGLENDYYSPSTRK SGVVNIRLPHAGAAAGVSYEVRGVDAKEF+CVCNKKI+L+PGR
Sbjct: 989  SKRGLENDYYSPSTRKGSGVVNIRLPHAGAAAGVSYEVRGVDAKEFVCVCNKKIQLNPGR 1048

Query: 258  LLEEVSNVAYSQTVQQLLDIKSDGKHPPALDPLK 292
            LLE+V+NVAYSQTVQQLLDIKSDGK PPALDPLK
Sbjct: 1049 LLEDVNNVAYSQTVQQLLDIKSDGKFPPALDPLK 1082

[Close]

BLAST of Lag0023320 vs. ExPASy TrEMBL
Match: A0A6J1G9X2 (DExH-box ATP-dependent RNA helicase DExH11 isoform X5 OS=Cucurbita moschata OX=3662 GN=LOC111452275 PE=4 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 8.0e-97
Identity = 185/214 (86.45%), Postives = 196/214 (91.59%), Query Frame = 0


Query: 78  LRRRSTNKERRLGCIKGEPTIEEYYDLYAEAEKHNNQILEAVMQSSAIQQFLTPGRVVVV 137
           L R+     R + CIKGEP IEEYYDLYAEAEK++NQ+ EAVMQSSAIQQFLTPGRVVVV
Sbjct: 629 LMRKLAQPTRTVECIKGEPAIEEYYDLYAEAEKNSNQVSEAVMQSSAIQQFLTPGRVVVV 688

Query: 138 KSQSAKDHLLAVIVKPLPMVSRQYIVLVLKPDSPPVQSSSSGDVEKKKEDFPQGYFMVPK 197
           KSQS KDHLL+VIVK LPM SRQYIVLVLKPDSPPVQSSSS D  KKKEDFPQGYFMVPK
Sbjct: 689 KSQSDKDHLLSVIVKALPMASRQYIVLVLKPDSPPVQSSSSDDSVKKKEDFPQGYFMVPK 748

Query: 198 SKRGLENDYYSPSTRKASGVVNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKIKLDPGR 257
           SKRGLENDYYSPSTRK SGVVNIRLPHAGAAAGVSYEVRGVDAKEF+CVCNKKI+L+PGR
Sbjct: 749 SKRGLENDYYSPSTRKGSGVVNIRLPHAGAAAGVSYEVRGVDAKEFVCVCNKKIQLNPGR 808

Query: 258 LLEEVSNVAYSQTVQQLLDIKSDGKHPPALDPLK 292
           LLE+V+NVAYSQTVQQLLDIKSDGK PPALDPLK
Sbjct: 809 LLEDVNNVAYSQTVQQLLDIKSDGKFPPALDPLK 842

[Close]

BLAST of Lag0023320 vs. ExPASy TrEMBL
Match: A0A6J1GAL5 (DExH-box ATP-dependent RNA helicase DExH11 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111452275 PE=4 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 8.0e-97
Identity = 185/214 (86.45%), Postives = 196/214 (91.59%), Query Frame = 0


Query: 78   LRRRSTNKERRLGCIKGEPTIEEYYDLYAEAEKHNNQILEAVMQSSAIQQFLTPGRVVVV 137
            L R+     R + CIKGEP IEEYYDLYAEAEK++NQ+ EAVMQSSAIQQFLTPGRVVVV
Sbjct: 870  LMRKLAQPTRTVECIKGEPAIEEYYDLYAEAEKNSNQVSEAVMQSSAIQQFLTPGRVVVV 929

Query: 138  KSQSAKDHLLAVIVKPLPMVSRQYIVLVLKPDSPPVQSSSSGDVEKKKEDFPQGYFMVPK 197
            KSQS KDHLL+VIVK LPM SRQYIVLVLKPDSPPVQSSSS D  KKKEDFPQGYFMVPK
Sbjct: 930  KSQSDKDHLLSVIVKALPMASRQYIVLVLKPDSPPVQSSSSDDSVKKKEDFPQGYFMVPK 989

Query: 198  SKRGLENDYYSPSTRKASGVVNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKIKLDPGR 257
            SKRGLENDYYSPSTRK SGVVNIRLPHAGAAAGVSYEVRGVDAKEF+CVCNKKI+L+PGR
Sbjct: 990  SKRGLENDYYSPSTRKGSGVVNIRLPHAGAAAGVSYEVRGVDAKEFVCVCNKKIQLNPGR 1049

Query: 258  LLEEVSNVAYSQTVQQLLDIKSDGKHPPALDPLK 292
            LLE+V+NVAYSQTVQQLLDIKSDGK PPALDPLK
Sbjct: 1050 LLEDVNNVAYSQTVQQLLDIKSDGKFPPALDPLK 1083

[Close]

BLAST of Lag0023320 vs. TAIR 10
Match: AT3G46960.1 (RNA helicase, ATP-dependent, SK12/DOB1 protein )

HSP 1 Score: 221.1 bits (562), Expect = 1.2e-57
Identity = 114/207 (55.07%), Postives = 150/207 (72.46%), Query Frame = 0


Query: 87   RRLGCIKGEPTIEEYYDLYAEAEKHNNQILEAVMQSSAIQQFLTPGRVVVVKSQSAKDHL 146
            + + CIKGEP IE+YYD+Y EA ++NN++ EAVMQS   Q FL  GRVVV+KS    D+L
Sbjct: 878  KHIECIKGEPAIEDYYDMYMEANEYNNKMSEAVMQSPYAQSFLVQGRVVVMKSGMGIDNL 937

Query: 147  LAVIVKPLPMVSRQYIVLVLKPDSPPVQSSSSGDVEKKKEDFPQGYFMVPKSKRGLENDY 206
            L +++K     +RQY+VLV+K + PP + +    + KK  D  QGYF+ PKSKRG E ++
Sbjct: 938  LGIVLKGPSNTNRQYVVLVIKSEIPPPEKNMV-SIGKKSSDPSQGYFIAPKSKRGFEEEF 997

Query: 207  YS-PSTRKASGVVNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKIKLDPGRLLEEVSNV 266
            Y+ PS+RK   V+ I LP+ G AAGV YEV+G D KEFLC+C+ KIK+D  RLLE+ +  
Sbjct: 998  YTKPSSRKGPVVIKIELPYHGVAAGVGYEVKGFDNKEFLCICDSKIKIDQVRLLEDGNKA 1057

Query: 267  AYSQTVQQLLDIKSDG-KHPPALDPLK 292
            A+SQTVQQLLD+KSDG K PPALDP+K
Sbjct: 1058 AFSQTVQQLLDLKSDGNKFPPALDPVK 1083

The following BLAST results are available for this feature:

BLAST of Lag0023320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150906.1	3.9e-98	87.38	DExH-box ATP-dependent RNA helicase DExH11 [Momordica charantia]	[more]
XP_023524999.1	2.5e-97	86.92	DExH-box ATP-dependent RNA helicase DExH11 isoform X1 [Cucurbita pepo subsp. pep...	[more]
XP_023525002.1	2.5e-97	86.92	DExH-box ATP-dependent RNA helicase DExH11 isoform X2 [Cucurbita pepo subsp. pep...	[more]
XP_038896038.1	7.4e-97	86.92	DExH-box ATP-dependent RNA helicase DExH11 isoform X2 [Benincasa hispida]	[more]
KAG7036972.1	7.4e-97	86.92	DExH-box ATP-dependent RNA helicase DExH11, partial [Cucurbita argyrosperma subs...	[more]

BLAST of Lag0023320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JAA5	1.7e-56	55.07	DExH-box ATP-dependent RNA helicase DExH11 OS=Arabidopsis thaliana OX=3702 GN=SK...	[more]

BLAST of Lag0023320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DCW3	1.9e-98	87.38	DExH-box ATP-dependent RNA helicase DExH11 OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1G9Z1	8.0e-97	86.45	DExH-box ATP-dependent RNA helicase DExH11 isoform X2 OS=Cucurbita moschata OX=3...	[more]
A0A6J1GAJ6	8.0e-97	86.45	DExH-box ATP-dependent RNA helicase DExH11 isoform X4 OS=Cucurbita moschata OX=3...	[more]
A0A6J1G9X2	8.0e-97	86.45	DExH-box ATP-dependent RNA helicase DExH11 isoform X5 OS=Cucurbita moschata OX=3...	[more]
A0A6J1GAL5	8.0e-97	86.45	DExH-box ATP-dependent RNA helicase DExH11 isoform X3 OS=Cucurbita moschata OX=3...	[more]

BLAST of Lag0023320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46960.1	1.2e-57	55.07	RNA helicase, ATP-dependent, SK12/DOB1 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025696	rRNA-processing arch domain	PFAM	PF13234	rRNA_proc-arch	coord: 84..292 e-value: 3.9E-19 score: 69.5
None	No IPR available	PANTHER	PTHR12131	ATP-DEPENDENT RNA AND DNA HELICASE	coord: 85..291
None	No IPR available	PANTHER	PTHR12131:SF8	HELICASE SKI2W	coord: 85..291

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0023320.1	Lag0023320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006401	RNA catabolic process
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003724	RNA helicase activity