Lag0023266 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0023266
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr7: 46628545 .. 46628946 (+)
RNA-Seq Expression	Lag0023266
Synteny	Lag0023266

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCGTTGTGAATGGATCCTTGAATATCTGTCAAATTATTCGACTGCAAATTCAAAGGGTCAGGCATGTGTCCAATCCGAGGAGGAAGTTATCGATATTATATCAAAGGGTGAAGATATTGTTTTGCACACAGATGTTGCATTCATGGGAAAGTCGCGTAAAGGTGGTATTGGGATTATTATGCGAGATAAGGTTGGTAAGCTTCAGGCGGCTCAATCACTGGCGTCTTCAGTTTGCTCGTCTCCTCTAAGGGCGAAAGTAGTCGCAGTTTTGGAAGGGCTTTGTCTGGCTAGAAGCCTAGATGTGCGAAGAGTAACAGTGTTATCTGACTCTCTAAATCTAGTTAAAGCTATTAATCAGGATATCCAATGTGACTATAGTATTGCATCAACTCTCTAG

mRNA sequence

ATGATTCGTTGTGAATGGATCCTTGAATATCTGTCAAATTATTCGACTGCAAATTCAAAGGGTCAGGCATGTGTCCAATCCGAGGAGGAAGTTATCGATATTATATCAAAGGGTGAAGATATTGTTTTGCACACAGATGTTGCATTCATGGGAAAGTCGCGTAAAGGTGGTATTGGGATTATTATGCGAGATAAGGTTGGTAAGCTTCAGGCGGCTCAATCACTGGCGTCTTCAGTTTGCTCGTCTCCTCTAAGGGCGAAAGTAGTCGCAGTTTTGGAAGGGCTTTGTCTGGCTAGAAGCCTAGATGTGCGAAGAGTAACAGTGTTATCTGACTCTCTAAATCTAGTTAAAGCTATTAATCAGGATATCCAATGTGACTATAGTATTGCATCAACTCTCTAG

Coding sequence (CDS)

ATGATTCGTTGTGAATGGATCCTTGAATATCTGTCAAATTATTCGACTGCAAATTCAAAGGGTCAGGCATGTGTCCAATCCGAGGAGGAAGTTATCGATATTATATCAAAGGGTGAAGATATTGTTTTGCACACAGATGTTGCATTCATGGGAAAGTCGCGTAAAGGTGGTATTGGGATTATTATGCGAGATAAGGTTGGTAAGCTTCAGGCGGCTCAATCACTGGCGTCTTCAGTTTGCTCGTCTCCTCTAAGGGCGAAAGTAGTCGCAGTTTTGGAAGGGCTTTGTCTGGCTAGAAGCCTAGATGTGCGAAGAGTAACAGTGTTATCTGACTCTCTAAATCTAGTTAAAGCTATTAATCAGGATATCCAATGTGACTATAGTATTGCATCAACTCTCTAG

Protein sequence

MIRCEWILEYLSNYSTANSKGQACVQSEEEVIDIISKGEDIVLHTDVAFMGKSRKGGIGIIMRDKVGKLQAAQSLASSVCSSPLRAKVVAVLEGLCLARSLDVRRVTVLSDSLNLVKAINQDIQCDYSIASTL

Homology

[Close]

BLAST of Lag0023266 vs. NCBI nr
Match: KAF5443035.1 (hypothetical protein F2P56_035630 [Juglans regia])

HSP 1 Score: 55.1 bits (131), Expect = 5.5e-04
Identity = 27/85 (31.76%), Postives = 48/85 (56.47%), Query Frame = 0


Query: 41  IVLHTDVAFMGKSRKGGIGIIMRDKVGKLQAAQSLASSVCSSPLRAKVVAVLEGLCLARS 100
           + ++ D AF    RK G G+++RD+ G +Q +  L      S + A+  A+   LCL   
Sbjct: 94  VKVNWDAAFKANQRKMGAGVVVRDEEGNVQVSLCLPKDCIQSTVIAEATALWRALCLCAK 153

Query: 101 LDVRRVTVLSDSLNLVKAINQDIQC 126
           L++++V +  DSL ++KA+N   +C
Sbjct: 154 LNIQKVVLEGDSLEVIKAVNDREEC 178

[Close]

BLAST of Lag0023266 vs. NCBI nr
Match: XP_018812812.2 (uncharacterized protein LOC108985100 [Juglans regia])

HSP 1 Score: 55.1 bits (131), Expect = 5.5e-04
Identity = 27/85 (31.76%), Postives = 48/85 (56.47%), Query Frame = 0


Query: 41  IVLHTDVAFMGKSRKGGIGIIMRDKVGKLQAAQSLASSVCSSPLRAKVVAVLEGLCLARS 100
           + ++ D AF    RK G G+++RD+ G +Q +  L      S + A+  A+   LCL   
Sbjct: 72  VKVNWDAAFKANQRKMGAGVVVRDEEGNVQVSLCLPKDCIQSTVIAEATALWRALCLCAK 131

Query: 101 LDVRRVTVLSDSLNLVKAINQDIQC 126
           L++++V +  DSL ++KA+N   +C
Sbjct: 132 LNIQKVVLEGDSLEVIKAVNDREEC 156

[Close]

BLAST of Lag0023266 vs. NCBI nr
Match: XP_024178222.1 (uncharacterized protein LOC112184181 [Rosa chinensis])

HSP 1 Score: 54.3 bits (129), Expect = 9.3e-04
Identity = 31/81 (38.27%), Postives = 50/81 (61.73%), Query Frame = 0


Query: 40  DIVLHTDVAFMGKSRKGGIGIIMRDKVGKLQAAQSLASSVCSSPLRAKVVAVLEGLCLAR 99
           ++ L+ D AF+ +  KGG+G ++R+  G++QAA   A    SSP+ A+++A+  GL L R
Sbjct: 65  ELTLNVDGAFLPQLPKGGLGKVLRNTSGEVQAAFQTAVQFVSSPMHAELLAIQSGLQLVR 124

Query: 100 SLDVRRVTVLSDSLNLVKAIN 121
            L    V ++SD L  V+ IN
Sbjct: 125 VLQFESVCIVSDCLLAVQDIN 145

The following BLAST results are available for this feature:

BLAST of Lag0023266 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF5443035.1	5.5e-04	31.76	hypothetical protein F2P56_035630 [Juglans regia]	[more]
XP_018812812.2	5.5e-04	31.76	uncharacterized protein LOC108985100 [Juglans regia]	[more]
XP_024178222.1	9.3e-04	38.27	uncharacterized protein LOC112184181 [Rosa chinensis]	[more]

BLAST of Lag0023266 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 45..124 e-value: 6.3E-12 score: 45.4
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 39..131 e-value: 5.5E-10 score: 41.4
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 43..123 e-value: 1.04251E-13 score: 61.176
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 40..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0023266.1	Lag0023266.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity