Lag0022243 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0022243
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Locationchr7: 21859383 .. 21859940 (-)
RNA-Seq ExpressionLag0022243
SyntenyLag0022243
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCAACCAGTTATCAGTGGTCGACCGAGAGGGAGAAAATTTCGAAGAAGGCTGGAATTTATGAATTAGATGAGTCGAGTTTGTTGAAGGCACGGATGACATCTTTGACAAATGCGCTGAACAAGTTGACTTCATCTGAGGTGGTCAAATCCATTTCCACCTTAGCTGAAGGTTATTCAAAGAAGGAAGGTCAAGATGTTGAAGAGGTTCAGTACATGGGAAACAGACCATTTACTCAAGGAGTATCGGACTTTTACCACCCCAGTCTGCGCAATCATGAGAACTTCTCGTACTCAAACACGAAGAATGTTTTGCAGCCACATCCAGGTTTTGCATCATCTAGTACGCCAGAAAAGAAGAGTAACCTGGAGGAGATGGTGACTATGTTTATCAAAGAACAGAAAGTGTTGAATGTGAATCTCCAGATGGCAGTTAATAACCACGACACAGCTCTGAAAAATATGGAAGTTCAAATAGGTCAGATAGCTTCAGCGGTGAATGCCCTTCAGAATGGAAAATTTCCAAGCGACACTGAACCCAATCCTCGAGAGTAG

mRNA sequence

ATGGCAGCAACCAGTTATCAGTGGTCGACCGAGAGGGAGAAAATTTCGAAGAAGGCTGGAATTTATGAATTAGATGAGTCGAGTTTGTTGAAGGCACGGATGACATCTTTGACAAATGCGCTGAACAAGTTGACTTCATCTGAGGTGGTCAAATCCATTTCCACCTTAGCTGAAGGTTATTCAAAGAAGGAAGGTCAAGATGTTGAAGAGGTTCAGTACATGGGAAACAGACCATTTACTCAAGGAGTATCGGACTTTTACCACCCCAGTCTGCGCAATCATGAGAACTTCTCGTACTCAAACACGAAGAATGTTTTGCAGCCACATCCAGGTTTTGCATCATCTAGTACGCCAGAAAAGAAGAGTAACCTGGAGGAGATGGTGACTATGTTTATCAAAGAACAGAAAGTGTTGAATGTGAATCTCCAGATGGCAGTTAATAACCACGACACAGCTCTGAAAAATATGGAAGTTCAAATAGGTCAGATAGCTTCAGCGGTGAATGCCCTTCAGAATGGAAAATTTCCAAGCGACACTGAACCCAATCCTCGAGAGTAG

Coding sequence (CDS)

ATGGCAGCAACCAGTTATCAGTGGTCGACCGAGAGGGAGAAAATTTCGAAGAAGGCTGGAATTTATGAATTAGATGAGTCGAGTTTGTTGAAGGCACGGATGACATCTTTGACAAATGCGCTGAACAAGTTGACTTCATCTGAGGTGGTCAAATCCATTTCCACCTTAGCTGAAGGTTATTCAAAGAAGGAAGGTCAAGATGTTGAAGAGGTTCAGTACATGGGAAACAGACCATTTACTCAAGGAGTATCGGACTTTTACCACCCCAGTCTGCGCAATCATGAGAACTTCTCGTACTCAAACACGAAGAATGTTTTGCAGCCACATCCAGGTTTTGCATCATCTAGTACGCCAGAAAAGAAGAGTAACCTGGAGGAGATGGTGACTATGTTTATCAAAGAACAGAAAGTGTTGAATGTGAATCTCCAGATGGCAGTTAATAACCACGACACAGCTCTGAAAAATATGGAAGTTCAAATAGGTCAGATAGCTTCAGCGGTGAATGCCCTTCAGAATGGAAAATTTCCAAGCGACACTGAACCCAATCCTCGAGAGTAG

Protein sequence

MAATSYQWSTEREKISKKAGIYELDESSLLKARMTSLTNALNKLTSSEVVKSISTLAEGYSKKEGQDVEEVQYMGNRPFTQGVSDFYHPSLRNHENFSYSNTKNVLQPHPGFASSSTPEKKSNLEEMVTMFIKEQKVLNVNLQMAVNNHDTALKNMEVQIGQIASAVNALQNGKFPSDTEPNPRE
Homology
BLAST of Lag0022243 vs. NCBI nr
Match: XP_023929660.1 (uncharacterized protein LOC112040975 [Quercus suber])

HSP 1 Score: 139.8 bits (351), Expect = 2.3e-29
Identity = 83/197 (42.13%), Postives = 119/197 (60.41%), Query Frame = 0

Query: 1   MAATSYQWSTEREKISKKAGIYELDESSLLKARMTSLTNALNKLTSSEVVKSISTLAEGY 60
           MA+  YQW TER    K AGI+EL+  + L A++ SL++ ++ LT+  + +S+  +A   
Sbjct: 211 MASNKYQWPTERTMAKKVAGIHELESFAALAAQVASLSHQVSALTTQRIPQSVEYVAASS 270

Query: 61  SKKEGQDV--EEVQYMGNRPFT---QGVSDFYHPSLRNHENFSYSNTKNVLQPHPGFASS 120
                 +   E VQY+ NR +      + ++YHP LRNHENFSY NTKNVLQP PGF  S
Sbjct: 271 MTVPMNEASQEHVQYINNRNYNYHGNPMPNYYHPGLRNHENFSYGNTKNVLQPPPGF-DS 330

Query: 121 STPEKKSNLEEMVTMFIKEQKV-------LNVNLQMAVNNHDTALKNMEVQIGQIASAVN 180
              EKK +LE+ +  F++E K           N++   +N    +KN+EVQIGQ+A+ +N
Sbjct: 331 QPSEKKMSLEDAMVSFVEETKARFRKSDSQLDNIETHCSNMGAIMKNLEVQIGQLATTIN 390

Query: 181 ALQNGKFPSDTEPNPRE 186
           A Q G FPS+TE NP+E
Sbjct: 391 AQQRGTFPSNTEVNPKE 406

BLAST of Lag0022243 vs. NCBI nr
Match: XP_023874613.1 (uncharacterized protein LOC111987139 [Quercus suber])

HSP 1 Score: 139.0 bits (349), Expect = 4.0e-29
Identity = 82/197 (41.62%), Postives = 119/197 (60.41%), Query Frame = 0

Query: 1   MAATSYQWSTEREKISKKAGIYELDESSLLKARMTSLTNALNKLTSSEVVKSISTLAEGY 60
           MA+ +YQW TER    K AGI+EL+  + L A++ SL++ ++ LT+  + +    +A   
Sbjct: 211 MASNNYQWPTERTMAKKVAGIHELEPFAALSAQVASLSHQVSALTTQRIPQGAEYVAASS 270

Query: 61  SKKEGQDV--EEVQYMGNRPFT---QGVSDFYHPSLRNHENFSYSNTKNVLQPHPGFASS 120
                 +   E+VQY+ NR +      + ++YHP LRNHENFSY NTKNVLQP PGF  S
Sbjct: 271 MTVPMNEASQEQVQYINNRNYNYRGNPMPNYYHPGLRNHENFSYGNTKNVLQPPPGF-DS 330

Query: 121 STPEKKSNLEEMVTMFIKEQKVLNV-------NLQMAVNNHDTALKNMEVQIGQIASAVN 180
              EKK +LE+ +  F++E K           N++   +N    +KN+EVQIGQ+A+ +N
Sbjct: 331 QPSEKKMSLEDAMVSFVEETKATFKKSDSQLDNIETHCSNMGATMKNLEVQIGQLATTIN 390

Query: 181 ALQNGKFPSDTEPNPRE 186
           A Q G FPS+TE NP+E
Sbjct: 391 AQQRGTFPSNTEVNPKE 406

BLAST of Lag0022243 vs. NCBI nr
Match: XP_023903214.1 (uncharacterized protein LOC112015077 [Quercus suber])

HSP 1 Score: 138.7 bits (348), Expect = 5.2e-29
Identity = 82/197 (41.62%), Postives = 120/197 (60.91%), Query Frame = 0

Query: 1   MAATSYQWSTEREKISKKAGIYELDESSLLKARMTSLTNALNKLTSSEVVKSISTLAEGY 60
           MA+ +YQW TER    K AGI+EL+  + L A++ SL++ ++ L++  + +S   +A   
Sbjct: 211 MASNNYQWPTERTMAKKVAGIHELEPFAALSAQVASLSHQVSALSTQRIPQSAEYVAASS 270

Query: 61  SKKEGQDV--EEVQYMGNRPFT---QGVSDFYHPSLRNHENFSYSNTKNVLQPHPGFASS 120
                 +   E+VQY+ NR +      + ++YHP LRNHENFSY NTKNVLQP PGF  S
Sbjct: 271 MTVPMNEASQEQVQYINNRNYNYRGNPMPNYYHPGLRNHENFSYGNTKNVLQPPPGF-DS 330

Query: 121 STPEKKSNLEEMVTMFIKEQKVLNV-------NLQMAVNNHDTALKNMEVQIGQIASAVN 180
              EKK +LE+ +  F++E K           N++   +N    +KN+EVQIGQ+A+ +N
Sbjct: 331 QPSEKKMSLEDAMVSFVEETKARFKKSDSRLDNIETHCSNMGATMKNLEVQIGQLATTIN 390

Query: 181 ALQNGKFPSDTEPNPRE 186
           A Q G FPS+TE NP+E
Sbjct: 391 AQQRGTFPSNTEVNPKE 406

BLAST of Lag0022243 vs. NCBI nr
Match: XP_035539656.1 (uncharacterized protein LOC118344026 [Juglans regia])

HSP 1 Score: 136.3 bits (342), Expect = 2.6e-28
Identity = 82/197 (41.62%), Postives = 118/197 (59.90%), Query Frame = 0

Query: 1   MAATSYQWSTEREKISKKAGIYELDESSLLKARMTSLTNALNKLTSSEVVKSISTLAEGY 60
           MA+ +YQW  ER    K AGI+EL+  + L A++ SL++ ++ LT+  + +S   +A   
Sbjct: 58  MASNNYQWPIERTMTKKVAGIHELEPLAALSAQVASLSHQISALTTQRIPQSAEYVAATS 117

Query: 61  SKKEGQDV--EEVQYMGNRPFT---QGVSDFYHPSLRNHENFSYSNTKNVLQPHPGFASS 120
                 +   E+VQY+ NR +      + ++YH  LRNHEN SY NTKNVLQPHPGF  S
Sbjct: 118 MTVPSNEASQEQVQYINNRNYNYRGNPMPNYYHLGLRNHENLSYKNTKNVLQPHPGF-DS 177

Query: 121 STPEKKSNLEEMVTMFIKEQKVLNV-------NLQMAVNNHDTALKNMEVQIGQIASAVN 180
              EKK +LE+ +  F++E             N++   +N   A+KN+EVQIGQ+A+ +N
Sbjct: 178 QPSEKKISLEDAMVSFVEETNTRFKKTDSRLDNIETHCSNMGAAIKNIEVQIGQLATTIN 237

Query: 181 ALQNGKFPSDTEPNPRE 186
           A Q G FPS+TE NPRE
Sbjct: 238 AQQRGTFPSNTEVNPRE 253

BLAST of Lag0022243 vs. NCBI nr
Match: XP_024020480.1 (uncharacterized protein LOC112091333 [Morus notabilis])

HSP 1 Score: 135.2 bits (339), Expect = 5.8e-28
Identity = 84/199 (42.21%), Postives = 124/199 (62.31%), Query Frame = 0

Query: 1   MAATSYQWSTEREKISKKAGIYELDESSLLKARMTSLTNALNKLTSSEVVKSISTLAEGY 60
           M+  SYQW +ER    K AGI+E+D  + L A++++L+N +  LT+ E   S   +A G 
Sbjct: 215 MSTNSYQWPSERSIPKKTAGIHEVDPLTSLSAQVSALSNQIAALTNREASSSREAVA-GA 274

Query: 61  SKKEGQD---VEEVQYMGNRPFT---QGVSDFYHPSLRNHENFSYSNTKNVLQPHPGFAS 120
           S    QD    E+VQ++ NR F      + + YHP LRNHENFSY+N +NVLQP PGF +
Sbjct: 275 STLFAQDEYTQEQVQFVNNRNFNYKPNQLPNHYHPGLRNHENFSYANNRNVLQPPPGF-N 334

Query: 121 SSTPEKKSNLEEMVTMFI--------KEQKVLNVNLQMAVNNHDTALKNMEVQIGQIASA 180
               EKK ++E++++ FI        K++  L+ N++   NN +  +K++EVQIGQ+A+ 
Sbjct: 335 QQVVEKKPSVEDLLSTFIVETRGRFNKDEARLD-NIETHYNNMNATMKSLEVQIGQLANT 394

Query: 181 VNALQNGKFPSDTEPNPRE 186
           V    +GKFPSDTEPNP +
Sbjct: 395 VKGQSSGKFPSDTEPNPND 410

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023929660.12.3e-2942.13uncharacterized protein LOC112040975 [Quercus suber][more]
XP_023874613.14.0e-2941.62uncharacterized protein LOC111987139 [Quercus suber][more]
XP_023903214.15.2e-2941.62uncharacterized protein LOC112015077 [Quercus suber][more]
XP_035539656.12.6e-2841.62uncharacterized protein LOC118344026 [Juglans regia][more]
XP_024020480.15.8e-2842.21uncharacterized protein LOC112091333 [Morus notabilis][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0022243.1Lag0022243.1mRNA