Lag0022034 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0022034
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr7: 16576897 .. 16578243 (+)
RNA-Seq ExpressionLag0022034
SyntenyLag0022034
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCCATTCAGATTCTATCAATGCGATCAACATGATTCGAGGTGATATTCAAATTACATCTGACGTGTATCATTGGATACAACAAATTAGGAGGATGTCTGAATCTTTTGAAACTGTGGCCTTTAAACATGTCACTAGAGATTGCAATAGGCAGGGAGATTTCTTAGCAAAGGAAGCTTTAGCTAAGCGCAACTTTATGCTTTGGATAGCGAATGTCCCACCAGAGATTGAATCTATGGATGATTCAACTCATGGTCATTGTAATGTTTCTAGTCTTGATTTGAATTAATGAAATGGTTTGTCTTATATTGAAAAATATATATATATATATATATATATATATATATGAGGTGGGAGAAATGTGAAATTGATGGTGCACGGCTGCATGGAGGAAAAAGATAAAAGGAAAATGGTTTAGTTACTTTTGTAGGGCGTAGGTGTTGGGGCGTGGAGGTGGGGCGTTTGTACTGGGAGGCAGGATATGGCTGTGTTTTCTTGAGGTCTCAGGATAAGGTTCCCTTTTCTCCATGTAGGGAAAGTGAAAGGACATTCAGAAATGGGCCATCCCTTGCCTCCACAACCTTAGGACTATTTCTTCAACTTCACTTCATTTCCCTACCATTGCTCCCCCATGCCCCCCCTTCCCCTTTCCCTTTCCCTTTTTTAATCATTTAATTAAACTCTTTCACACGACTTCAACACGACTTCAACACGCACAAAGGTTCAAAACACTTTTGATTCCTATACTTCGGCTTAATTTGAGATTATTGTGACTTTTAAAATAAATATGCTTTTAGAAAAATCACTTGTGACATGATGTAAGAGTAGTGTTGGGTAAGTTTGAAATTTAGATATGAAAAAGCATATTATGGTGTTCGGTAAATCGATAGTAAATTGTTGCGATTTGACTATAATAAACAAAGTAGGCTTATTATTTTAAATATTGTTATATTGATATTTAATACCAAATTTATTATGCGATAATCATTTAATGTTATTATATGATCAAAATCATTTTCTAAAAAATATTAATAAATAAAAATTGGTTTTATTACAAGTTTATAACACACATTGGATAAATTAATAGGATGAAATCATTCACCATACTTGGGTTTTGCTTCTTTGGGATGAGAACAATGGTTGTGTTATTGAACTGATCAAGAATTGTCCTCTCATTGAAGCATCAAAGGCATCGAAGACATGTGCCAATATTTTTGGTAGAATAGAGTTGGCAAACCATCTGGTCCAAGGGTCTTTGTTGGATGTATTTGCTTTAGAGCTTCCTCTGTCTCTGTCGCTACAAACTATCGGTCTAGAGTGGCGTTCATGTCATCTGTCACTCTAG

mRNA sequence

ATGGTCCATTCAGATTCTATCAATGCGATCAACATGATTCGAGGTGATATTCAAATTACATCTGACGTGTATCATTGGATACAACAAATTAGGAGGATGTCTGAATCTTTTGAAACTGTGGCCTTTAAACATGTCACTAGAGATTGCAATAGGCAGGGAGATTTCTTAGCAAAGGAAGCTTTAGCTAAGCGCAACTTTATGCTTTGGATAGCGAATGTCCCACCAGAGATTGAATCTATGGATGATTCAACTCATGGTCATTGGCGTAGGTGTTGGGGCGTGGAGGTGGGGCGTTTGTACTGGGAGGCAGGATATGGCTGTGTTTTCTTGAGGTCTCAGGATAAGGATGAAATCATTCACCATACTTGGGTTTTGCTTCTTTGGGATGAGAACAATGGTTGTGTTATTGAACTGATCAAGAATTGTCCTCTCATTGAAGCATCAAAGGCATCGAAGACATGTGCCAATATTTTTGGTAGAATAGAGTTGGCAAACCATCTGGTCCAAGGGTCTTTGTTGGATGTATTTGCTTTAGAGCTTCCTCTGTCTCTGTCGCTACAAACTATCGGTCTAGAGTGGCGTTCATGTCATCTGTCACTCTAG

Coding sequence (CDS)

ATGGTCCATTCAGATTCTATCAATGCGATCAACATGATTCGAGGTGATATTCAAATTACATCTGACGTGTATCATTGGATACAACAAATTAGGAGGATGTCTGAATCTTTTGAAACTGTGGCCTTTAAACATGTCACTAGAGATTGCAATAGGCAGGGAGATTTCTTAGCAAAGGAAGCTTTAGCTAAGCGCAACTTTATGCTTTGGATAGCGAATGTCCCACCAGAGATTGAATCTATGGATGATTCAACTCATGGTCATTGGCGTAGGTGTTGGGGCGTGGAGGTGGGGCGTTTGTACTGGGAGGCAGGATATGGCTGTGTTTTCTTGAGGTCTCAGGATAAGGATGAAATCATTCACCATACTTGGGTTTTGCTTCTTTGGGATGAGAACAATGGTTGTGTTATTGAACTGATCAAGAATTGTCCTCTCATTGAAGCATCAAAGGCATCGAAGACATGTGCCAATATTTTTGGTAGAATAGAGTTGGCAAACCATCTGGTCCAAGGGTCTTTGTTGGATGTATTTGCTTTAGAGCTTCCTCTGTCTCTGTCGCTACAAACTATCGGTCTAGAGTGGCGTTCATGTCATCTGTCACTCTAG

Protein sequence

MVHSDSINAINMIRGDIQITSDVYHWIQQIRRMSESFETVAFKHVTRDCNRQGDFLAKEALAKRNFMLWIANVPPEIESMDDSTHGHWRRCWGVEVGRLYWEAGYGCVFLRSQDKDEIIHHTWVLLLWDENNGCVIELIKNCPLIEASKASKTCANIFGRIELANHLVQGSLLDVFALELPLSLSLQTIGLEWRSCHLSL
Homology
The following BLAST results are available for this feature:
BLAST of Lag0022034 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0022034 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0022034 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0022034 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 2..60
e-value: 4.5E-9
score: 36.2
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..66
e-value: 1.3E-7
score: 33.6

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0022034.1Lag0022034.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity