Lag0021953 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0021953
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Tify domain-containing protein
Location	chr7: 14509263 .. 14509843 (+)
RNA-Seq Expression	Lag0021953
Synteny	Lag0021953

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTTGTTTCTTTCGGCGTTTTTGAAAATTCCAAAATTACCCCTGGCTCCAGGTCTGAATATAATAATTATAATATCCCCTTCCCCTTCCTCCCGCCTTCAAATTGGAGTGTGATTTCACAATCTTCACAAGTCGCCCTTGCACTCTCTCTGAGAGTTTGTTTTGTTCCTCCAAATATGTCCATTGTCGAGTTGGATTTCTTCGCCATGGAAAACCAAGCCACCGCCAACTCCAACTCCAACTCCAACTCCAACTCCAACTCCACTCTCTTCCGTCGCCAGAGAAGCTTCAAAGGTTCTTCTATTCTATACATCTCTAATTTCTCCATTGCCGATTTTTCTCTATGTATTTAGGTTTTTTATGGAGTTCACAATTGTTTCCTTCAGATATTCAGAGCGCCATTTCCAAAATCAACCCTGAGATTCTCAAATCTCTCATCACCTCTGGCTCCATCGATCATCACTCCGATTCTGCCAATCCGATCGCTTCGAAATTTCCGTCGAGTCCTGATGCCGATCGGAATCTCTCTACCACACTGCCTGTTTATTCCACCTCTTTCTCCAGGCATTCTTTCTAA

mRNA sequence

ATGGAGTTTGTTTCTTTCGGCGTTTTTGAAAATTCCAAAATTACCCCTGGCTCCAGGTCTGAATATAATAATTATAATATCCCCTTCCCCTTCCTCCCGCCTTCAAATTGGAGTGTGATTTCACAATCTTCACAAGTCGCCCTTGCACTCTCTCTGAGAGTTTGTTTTGTTCCTCCAAATATGTCCATTGTCGAGTTGGATTTCTTCGCCATGGAAAACCAAGCCACCGCCAACTCCAACTCCAACTCCAACTCCAACTCCAACTCCACTCTCTTCCGTCGCCAGAGAAGCTTCAAAGATATTCAGAGCGCCATTTCCAAAATCAACCCTGAGATTCTCAAATCTCTCATCACCTCTGGCTCCATCGATCATCACTCCGATTCTGCCAATCCGATCGCTTCGAAATTTCCGTCGAGTCCTGATGCCGATCGGAATCTCTCTACCACACTGCCTGTTTATTCCACCTCTTTCTCCAGGCATTCTTTCTAA

Coding sequence (CDS)

ATGGAGTTTGTTTCTTTCGGCGTTTTTGAAAATTCCAAAATTACCCCTGGCTCCAGGTCTGAATATAATAATTATAATATCCCCTTCCCCTTCCTCCCGCCTTCAAATTGGAGTGTGATTTCACAATCTTCACAAGTCGCCCTTGCACTCTCTCTGAGAGTTTGTTTTGTTCCTCCAAATATGTCCATTGTCGAGTTGGATTTCTTCGCCATGGAAAACCAAGCCACCGCCAACTCCAACTCCAACTCCAACTCCAACTCCAACTCCACTCTCTTCCGTCGCCAGAGAAGCTTCAAAGATATTCAGAGCGCCATTTCCAAAATCAACCCTGAGATTCTCAAATCTCTCATCACCTCTGGCTCCATCGATCATCACTCCGATTCTGCCAATCCGATCGCTTCGAAATTTCCGTCGAGTCCTGATGCCGATCGGAATCTCTCTACCACACTGCCTGTTTATTCCACCTCTTTCTCCAGGCATTCTTTCTAA

Protein sequence

MEFVSFGVFENSKITPGSRSEYNNYNIPFPFLPPSNWSVISQSSQVALALSLRVCFVPPNMSIVELDFFAMENQATANSNSNSNSNSNSTLFRRQRSFKDIQSAISKINPEILKSLITSGSIDHHSDSANPIASKFPSSPDADRNLSTTLPVYSTSFSRHSF

Homology

[Close]

BLAST of Lag0021953 vs. NCBI nr
Match: XP_031739596.1 (protein TIFY 9 isoform X2 [Cucumis sativus])

HSP 1 Score: 115.5 bits (288), Expect = 4.2e-22
Identity = 73/103 (70.87%), Postives = 80/103 (77.67%), Query Frame = 0


Query: 61  MSIVELDFFAMENQATANSNSNSNSNSNSTLFRRQRSFKDIQSAISKINPEILKSLITSG 120
           MS VELDFFAMENQ       +S++ +NSTLFRRQRSFKDIQSAISKINP ILKSLI SG
Sbjct: 1   MSTVELDFFAMENQ-------SSSTPANSTLFRRQRSFKDIQSAISKINPAILKSLIVSG 60

Query: 121 SIDHHSDSANP--IASKFPSSPDADRNLSTTLPVYSTSFSRHS 162
           S DHHSD   P  I+ KF  SP++DRNLSTTLPVYS S SR S
Sbjct: 61  SADHHSDFTVPFAISPKF-RSPNSDRNLSTTLPVYSPSESRLS 95

[Close]

BLAST of Lag0021953 vs. NCBI nr
Match: XP_004152149.1 (protein TIFY 9 isoform X1 [Cucumis sativus] >KGN52987.1 hypothetical protein Csa_015337 [Cucumis sativus])

HSP 1 Score: 115.5 bits (288), Expect = 4.2e-22
Identity = 73/103 (70.87%), Postives = 80/103 (77.67%), Query Frame = 0


Query: 61  MSIVELDFFAMENQATANSNSNSNSNSNSTLFRRQRSFKDIQSAISKINPEILKSLITSG 120
           MS VELDFFAMENQ       +S++ +NSTLFRRQRSFKDIQSAISKINP ILKSLI SG
Sbjct: 1   MSTVELDFFAMENQ-------SSSTPANSTLFRRQRSFKDIQSAISKINPAILKSLIVSG 60

Query: 121 SIDHHSDSANP--IASKFPSSPDADRNLSTTLPVYSTSFSRHS 162
           S DHHSD   P  I+ KF  SP++DRNLSTTLPVYS S SR S
Sbjct: 61  SADHHSDFTVPFAISPKF-RSPNSDRNLSTTLPVYSPSESRLS 95

[Close]

BLAST of Lag0021953 vs. NCBI nr
Match: KAG7018413.1 (Protein TIFY 9, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 114.8 bits (286), Expect = 7.1e-22
Identity = 68/106 (64.15%), Postives = 77/106 (72.64%), Query Frame = 0


Query: 61  MSIVELDFFAMENQATANSNSNSNSNSNSTLFRRQRSFKDIQSAISKINPEILKSLITSG 120
           MSIVELDFFAM+N++        NS+SN TLFRR RSFKDIQ AISKINPEILKSLI SG
Sbjct: 1   MSIVELDFFAMDNRSL-------NSDSNPTLFRRHRSFKDIQGAISKINPEILKSLIASG 60

Query: 121 SIDHHSDSANPIASKFP-----SSPDADRNLSTTLPVYSTSFSRHS 162
           S +H SD A PI  KFP      +P+ D+NLST  PVYS + SRHS
Sbjct: 61  STEHSSDFATPIPQKFPPLSLHRTPNVDQNLSTPPPVYSATTSRHS 99

[Close]

BLAST of Lag0021953 vs. NCBI nr
Match: XP_022980140.1 (protein TIFY 9-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 110.5 bits (275), Expect = 1.3e-20
Identity = 67/106 (63.21%), Postives = 75/106 (70.75%), Query Frame = 0


Query: 61  MSIVELDFFAMENQATANSNSNSNSNSNSTLFRRQRSFKDIQSAISKINPEILKSLITSG 120
           MSIVELDFFAM+N++        NS+SN TLFRR RSFKDIQ AISKINPEILKSLI SG
Sbjct: 1   MSIVELDFFAMDNRSL-------NSDSNPTLFRRHRSFKDIQGAISKINPEILKSLIASG 60

Query: 121 SIDHHSDSANPIASKFP-----SSPDADRNLSTTLPVYSTSFSRHS 162
           S +H SD A PI  KFP      +P  D+NLST  PVYS + SR S
Sbjct: 61  STEHRSDFATPIPQKFPPLSLHRTPKVDQNLSTPPPVYSATTSRMS 99

[Close]

BLAST of Lag0021953 vs. NCBI nr
Match: XP_022980141.1 (protein TIFY 9-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 110.5 bits (275), Expect = 1.3e-20
Identity = 67/106 (63.21%), Postives = 75/106 (70.75%), Query Frame = 0


Query: 61  MSIVELDFFAMENQATANSNSNSNSNSNSTLFRRQRSFKDIQSAISKINPEILKSLITSG 120
           MSIVELDFFAM+N++        NS+SN TLFRR RSFKDIQ AISKINPEILKSLI SG
Sbjct: 1   MSIVELDFFAMDNRSL-------NSDSNPTLFRRHRSFKDIQGAISKINPEILKSLIASG 60

Query: 121 SIDHHSDSANPIASKFP-----SSPDADRNLSTTLPVYSTSFSRHS 162
           S +H SD A PI  KFP      +P  D+NLST  PVYS + SR S
Sbjct: 61  STEHRSDFATPIPQKFPPLSLHRTPKVDQNLSTPPPVYSATTSRMS 99

[Close]

BLAST of Lag0021953 vs. ExPASy Swiss-Prot
Match: Q93ZM9 (Protein TIFY 9 OS=Arabidopsis thaliana OX=3702 GN=TIFY9 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.4e-04
Identity = 36/92 (39.13%), Postives = 54/92 (58.70%), Query Frame = 0


Query: 64  VELDFFAMENQATANSNSNSNSNSNSTLFRRQRSFKDIQSAISKINPEILKSLITSGSID 123
           +ELDF  +E + T    +N+          R+RSF+DIQ AISKI+PEI+KSL+   S  
Sbjct: 6   IELDFLGLEKKQT----NNAPKPKFQKFLDRRRSFRDIQGAISKIDPEIIKSLL--ASTG 65

Query: 124 HHSDSANPIASKFPSSPDADRNLSTTLPVYST 156
           ++SDS+    S  PS+P  D+      PV+++
Sbjct: 66  NNSDSSAKSRS-VPSTPREDQPQIPISPVHAS 90

The following BLAST results are available for this feature:

BLAST of Lag0021953 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031739596.1	4.2e-22	70.87	protein TIFY 9 isoform X2 [Cucumis sativus]	[more]
XP_004152149.1	4.2e-22	70.87	protein TIFY 9 isoform X1 [Cucumis sativus] >KGN52987.1 hypothetical protein Csa...	[more]
KAG7018413.1	7.1e-22	64.15	Protein TIFY 9, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022980140.1	1.3e-20	63.21	protein TIFY 9-like isoform X1 [Cucurbita maxima]	[more]
XP_022980141.1	1.3e-20	63.21	protein TIFY 9-like isoform X2 [Cucurbita maxima]	[more]

BLAST of Lag0021953 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93ZM9	1.4e-04	39.13	Protein TIFY 9 OS=Arabidopsis thaliana OX=3702 GN=TIFY9 PE=1 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040390	TIFY/JAZ family	PANTHER	PTHR33077	PROTEIN TIFY 4A-RELATED-RELATED	coord: 64..151
None	No IPR available	PANTHER	PTHR33077:SF96	BNAC03G71460D PROTEIN	coord: 64..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0021953.1	Lag0021953.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031347	regulation of defense response
biological_process	GO:2000022	regulation of jasmonic acid mediated signaling pathway
biological_process	GO:0009611	response to wounding
cellular_component	GO:0005634	nucleus