Lag0021939 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0021939
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr7: 14260942 .. 14261328 (-)
RNA-Seq ExpressionLag0021939
SyntenyLag0021939
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGACAACATTCTTCCTGCGACGACAACGTTTCACGAACGGCGAGTGGTGCGAGTTCCTTCCTGCGGCGACAACATTTCATGAACGACGGCGACACCGTTTTACCATATCTGGGCTTCTTGCGGCGATGGCGTTTCACGAATGGCAGAAACAACGTTTTACCAGATCTGGGCTTCTCCCAGCAAAAGAATTTCATGACCAAAACTTGAATGAGAAGCTTTTTTCGGTAGGTGGCAAGGAGACTCTTATCAAGGCTGTTATTCAATCAATCCCTACATACACAATGAGTTGCTTCCAACTCCCCAAGGGCTTGTGTGATGATATCAACAAGCCGTGTGCTAAATTTTGGTGGGGAACGGTTGGGGATCAGAAGAAAATTCACTAG

mRNA sequence

ATGGCGACAACATTCTTCCTGCGACGACAACGTTTCACGAACGGCGAGTGGTGCGAGTTCCTTCCTGCGGCGACAACATTTCATGAACGACGGCGACACCGTTTTACCATATCTGGGCTTCTTGCGGCGATGGCGTTTCACGAATGGCAGAAACAACGTTTTACCAGATCTGGGCTTCTCCCAGCAAAAGAATTTCATGACCAAAACTTGAATGAGAAGCTTTTTTCGGTAGGTGGCAAGGAGACTCTTATCAAGGCTGTTATTCAATCAATCCCTACATACACAATGAGTTGCTTCCAACTCCCCAAGGGCTTGTGTGATGATATCAACAAGCCGTGTGCTAAATTTTGGTGGGGAACGGTTGGGGATCAGAAGAAAATTCACTAG

Coding sequence (CDS)

ATGGCGACAACATTCTTCCTGCGACGACAACGTTTCACGAACGGCGAGTGGTGCGAGTTCCTTCCTGCGGCGACAACATTTCATGAACGACGGCGACACCGTTTTACCATATCTGGGCTTCTTGCGGCGATGGCGTTTCACGAATGGCAGAAACAACGTTTTACCAGATCTGGGCTTCTCCCAGCAAAAGAATTTCATGACCAAAACTTGAATGAGAAGCTTTTTTCGGTAGGTGGCAAGGAGACTCTTATCAAGGCTGTTATTCAATCAATCCCTACATACACAATGAGTTGCTTCCAACTCCCCAAGGGCTTGTGTGATGATATCAACAAGCCGTGTGCTAAATTTTGGTGGGGAACGGTTGGGGATCAGAAGAAAATTCACTAG

Protein sequence

MATTFFLRRQRFTNGEWCEFLPAATTFHERRRHRFTISGLLAAMAFHEWQKQRFTRSGLLPAKEFHDQNLNEKLFSVGGKETLIKAVIQSIPTYTMSCFQLPKGLCDDINKPCAKFWWGTVGDQKKIH
Homology
BLAST of Lag0021939 vs. NCBI nr
Match: XP_030479133.1 (uncharacterized protein LOC115696372 [Cannabis sativa])

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-15
Identity = 38/58 (65.52%), Postives = 47/58 (81.03%), Query Frame = 0

Query: 71  NEKLFSVGGKETLIKAVIQSIPTYTMSCFQLPKGLCDDINKPCAKFWWGTVGDQKKIH 129
           N+K+FS+GGKE L+KAV+QSIPTY MSCF+LP  LC++I    AKFWWG+  D KKIH
Sbjct: 744 NDKIFSIGGKEVLLKAVVQSIPTYAMSCFRLPVKLCNEIEAMMAKFWWGSSSDNKKIH 801

BLAST of Lag0021939 vs. NCBI nr
Match: XP_030936037.1 (uncharacterized protein LOC115961146 [Quercus lobata])

HSP 1 Score: 91.3 bits (225), Expect = 6.6e-15
Identity = 39/61 (63.93%), Postives = 45/61 (73.77%), Query Frame = 0

Query: 68  QNLNEKLFSVGGKETLIKAVIQSIPTYTMSCFQLPKGLCDDINKPCAKFWWGTVGDQKKI 127
           Q   EKL S  G+E LIKAV+QSIPTYTMSCF+LP GLC DI     KFWWG  GD++K+
Sbjct: 337 QGWKEKLLSQAGREILIKAVVQSIPTYTMSCFKLPLGLCGDIESLIRKFWWGQKGDRRKV 396

Query: 128 H 129
           H
Sbjct: 397 H 397

BLAST of Lag0021939 vs. NCBI nr
Match: XP_030509046.1 (uncharacterized protein LOC115723707 [Cannabis sativa])

HSP 1 Score: 90.9 bits (224), Expect = 8.7e-15
Identity = 39/58 (67.24%), Postives = 43/58 (74.14%), Query Frame = 0

Query: 71  NEKLFSVGGKETLIKAVIQSIPTYTMSCFQLPKGLCDDINKPCAKFWWGTVGDQKKIH 129
           NEKLFSVGGKE L+KAV+QSIPTY MSCF+LP   C+ I    A FWWGT  D  KIH
Sbjct: 493 NEKLFSVGGKEVLLKAVVQSIPTYAMSCFRLPTSFCNQIESMMANFWWGTNKDGSKIH 550

BLAST of Lag0021939 vs. NCBI nr
Match: XP_030483769.1 (uncharacterized protein LOC115700339 [Cannabis sativa])

HSP 1 Score: 90.1 bits (222), Expect = 1.5e-14
Identity = 35/58 (60.34%), Postives = 46/58 (79.31%), Query Frame = 0

Query: 71  NEKLFSVGGKETLIKAVIQSIPTYTMSCFQLPKGLCDDINKPCAKFWWGTVGDQKKIH 129
           N+K+FS+GGKE L+KAV+QSIPTY MSCF+L K  C+++    A+FWWG+  D KKIH
Sbjct: 758 NDKIFSIGGKEVLLKAVVQSIPTYAMSCFRLSKKFCNEVEAMMARFWWGSATDNKKIH 815

BLAST of Lag0021939 vs. NCBI nr
Match: XP_030483228.1 (uncharacterized protein LOC115699823 [Cannabis sativa])

HSP 1 Score: 89.7 bits (221), Expect = 1.9e-14
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 0

Query: 72  EKLFSVGGKETLIKAVIQSIPTYTMSCFQLPKGLCDDINKPCAKFWWGTVGDQKKIH 129
           +K+FSVGGKE L+KAVIQSIPTYTMSCF+LP   C +I    + FWWG+  D+KKIH
Sbjct: 631 DKIFSVGGKEVLLKAVIQSIPTYTMSCFKLPLKFCREIESMMSNFWWGSTSDKKKIH 687

BLAST of Lag0021939 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.3e-05
Identity = 21/57 (36.84%), Postives = 35/57 (61.40%), Query Frame = 0

Query: 72  EKLFSVGGKETLIKAVIQSIPTYTMSCFQLPKGLCDDINKPCAKFWWGTVGDQKKIH 129
           EK  S  G+ TL KAV+ S+P ++MS   LP+ + + +++    F WG+  ++KK H
Sbjct: 29  EKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQLSRTFLWGSTAEKKKQH 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_030479133.11.3e-1565.52uncharacterized protein LOC115696372 [Cannabis sativa][more]
XP_030936037.16.6e-1563.93uncharacterized protein LOC115961146 [Quercus lobata][more]
XP_030509046.18.7e-1567.24uncharacterized protein LOC115723707 [Cannabis sativa][more]
XP_030483769.11.5e-1460.34uncharacterized protein LOC115700339 [Cannabis sativa][more]
XP_030483228.11.9e-1464.91uncharacterized protein LOC115699823 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
P0C2F61.3e-0536.84Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33116:SF45SUBFAMILY NOT NAMEDcoord: 68..128
NoneNo IPR availablePANTHERPTHR33116REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATEDcoord: 68..128

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0021939.1Lag0021939.1mRNA