Lag0021924 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0021924
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionPlant protein of unknown function (DUF247)
Locationchr7: 13974474 .. 13974821 (+)
RNA-Seq ExpressionLag0021924
SyntenyLag0021924
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCGACAACAATCTCCTGACTTTTCAAAATGGTGCATCTATCGAGTTCCCAAACGACTACTAAGCCTGGATTGTAAAGCTTATAGGCCAGAAGTCATTTCCATTGGCCCTTTTCACCATGGTCAAAAGGATTTGATGGGCACAGAACAACTTAAACTCCTATGTCTCAATAGTTATCTACACCGTATAAATATGAGTGTTGAGGATGTGGTGGCGAAGGCTCGAAATTGGGAGAGTAAAGCTCGTAGTTGCTATGCAGAACACATAAACATGAACAGTGACGATTTTGTGAAAATGTTGCTCATGGATGGCTGTTTCATAGTGGAGGCTCTAATAATAGTATAA

mRNA sequence

ATGCTTCGACAACAATCTCCTGACTTTTCAAAATGGTGCATCTATCGAGTTCCCAAACGACTACTAAGCCTGGATTGTAAAGCTTATAGGCCAGAAGTCATTTCCATTGGCCCTTTTCACCATGGTCAAAAGGATTTGATGGGCACAGAACAACTTAAACTCCTATGTCTCAATAGTTATCTACACCGTATAAATATGAGTGTTGAGGATGTGGTGGCGAAGGCTCGAAATTGGGAGAGTAAAGCTCGTAGTTGCTATGCAGAACACATAAACATGAACAGTGACGATTTTGTGAAAATGTTGCTCATGGATGGCTGTTTCATAGTGGAGGCTCTAATAATAGTATAA

Coding sequence (CDS)

ATGCTTCGACAACAATCTCCTGACTTTTCAAAATGGTGCATCTATCGAGTTCCCAAACGACTACTAAGCCTGGATTGTAAAGCTTATAGGCCAGAAGTCATTTCCATTGGCCCTTTTCACCATGGTCAAAAGGATTTGATGGGCACAGAACAACTTAAACTCCTATGTCTCAATAGTTATCTACACCGTATAAATATGAGTGTTGAGGATGTGGTGGCGAAGGCTCGAAATTGGGAGAGTAAAGCTCGTAGTTGCTATGCAGAACACATAAACATGAACAGTGACGATTTTGTGAAAATGTTGCTCATGGATGGCTGTTTCATAGTGGAGGCTCTAATAATAGTATAA

Protein sequence

MLRQQSPDFSKWCIYRVPKRLLSLDCKAYRPEVISIGPFHHGQKDLMGTEQLKLLCLNSYLHRINMSVEDVVAKARNWESKARSCYAEHINMNSDDFVKMLLMDGCFIVEALIIV
Homology
BLAST of Lag0021924 vs. NCBI nr
Match: XP_022132118.1 (UPF0481 protein At3g47200-like [Momordica charantia])

HSP 1 Score: 141.4 bits (355), Expect = 5.0e-30
Identity = 68/116 (58.62%), Postives = 85/116 (73.28%), Query Frame = 0

Query: 1   MLRQQSP-DFSKWCIYRVPKRLLSLDCKAYRPEVISIGPFHHGQKDLMGTEQLKLLCLNS 60
           +L +Q P   ++WCIYRVPKRL  +   AY P+VI+IGPFHHG+ DL+ T+Q KL C  +
Sbjct: 57  LLEEQPPIAAAEWCIYRVPKRLFDMKSTAYTPKVIAIGPFHHGRNDLLATQQSKLHCFRN 116

Query: 61  YLHRINMSVEDVVAKARNWESKARSCYAEHINMNSDDFVKMLLMDGCFIVEALIIV 116
           YL RI   V+ VVA AR WE KAR  YAE INM SDDFV+M+L+D CFIVE +II+
Sbjct: 117 YLIRIERDVKYVVAIARQWEIKARRLYAEPINMTSDDFVRMMLIDACFIVELMIIL 172

BLAST of Lag0021924 vs. NCBI nr
Match: XP_022158990.1 (UPF0481 protein At3g47200-like isoform X2 [Momordica charantia])

HSP 1 Score: 134.0 bits (336), Expect = 8.0e-28
Identity = 63/113 (55.75%), Postives = 86/113 (76.11%), Query Frame = 0

Query: 4   QQSPDFSKWC-IYRVPKRLLSLDCKAYRPEVISIGPFHHGQKDLMGTEQLKLLCLNSYLH 63
           Q+ P  ++ C I+RVP+RLL  + +AY P++ISIGPFHHG++DLM  EQ KL  L+ YL 
Sbjct: 40  QELPPLAEECNIHRVPRRLLKRNLQAYMPQIISIGPFHHGRQDLMPMEQHKLRFLDRYLR 99

Query: 64  RINMSVEDVVAKARNWESKARSCYAEHINMNSDDFVKMLLMDGCFIVEALIIV 116
           R N  +E  V   R+WE+ AR+CYAE INM+SD+FVKM+L+DGCFIVE +++V
Sbjct: 100 RTNFGIEVTVGIVRSWETTARNCYAEPINMDSDEFVKMMLVDGCFIVELMMMV 152

BLAST of Lag0021924 vs. NCBI nr
Match: XP_022158992.1 (UPF0481 protein At3g47200-like isoform X3 [Momordica charantia])

HSP 1 Score: 134.0 bits (336), Expect = 8.0e-28
Identity = 63/113 (55.75%), Postives = 86/113 (76.11%), Query Frame = 0

Query: 4   QQSPDFSKWC-IYRVPKRLLSLDCKAYRPEVISIGPFHHGQKDLMGTEQLKLLCLNSYLH 63
           Q+ P  ++ C I+RVP+RLL  + +AY P++ISIGPFHHG++DLM  EQ KL  L+ YL 
Sbjct: 18  QELPPLAEECNIHRVPRRLLKRNLQAYMPQIISIGPFHHGRQDLMPMEQHKLRFLDRYLR 77

Query: 64  RINMSVEDVVAKARNWESKARSCYAEHINMNSDDFVKMLLMDGCFIVEALIIV 116
           R N  +E  V   R+WE+ AR+CYAE INM+SD+FVKM+L+DGCFIVE +++V
Sbjct: 78  RTNFGIEVTVGIVRSWETTARNCYAEPINMDSDEFVKMMLVDGCFIVELMMMV 130

BLAST of Lag0021924 vs. NCBI nr
Match: XP_022158989.1 (UPF0481 protein At3g47200-like isoform X1 [Momordica charantia])

HSP 1 Score: 134.0 bits (336), Expect = 8.0e-28
Identity = 63/113 (55.75%), Postives = 86/113 (76.11%), Query Frame = 0

Query: 4   QQSPDFSKWC-IYRVPKRLLSLDCKAYRPEVISIGPFHHGQKDLMGTEQLKLLCLNSYLH 63
           Q+ P  ++ C I+RVP+RLL  + +AY P++ISIGPFHHG++DLM  EQ KL  L+ YL 
Sbjct: 63  QELPPLAEECNIHRVPRRLLKRNLQAYMPQIISIGPFHHGRQDLMPMEQHKLRFLDRYLR 122

Query: 64  RINMSVEDVVAKARNWESKARSCYAEHINMNSDDFVKMLLMDGCFIVEALIIV 116
           R N  +E  V   R+WE+ AR+CYAE INM+SD+FVKM+L+DGCFIVE +++V
Sbjct: 123 RTNFGIEVTVGIVRSWETTARNCYAEPINMDSDEFVKMMLVDGCFIVELMMMV 175

BLAST of Lag0021924 vs. NCBI nr
Match: XP_022131634.1 (UPF0481 protein At3g47200-like [Momordica charantia])

HSP 1 Score: 133.3 bits (334), Expect = 1.4e-27
Identity = 64/102 (62.75%), Postives = 81/102 (79.41%), Query Frame = 0

Query: 14  IYRVPKRLLSLDCKAYRPEVISIGPFHH-GQKDLMGTEQLKLLCLNSYLHRINMSVEDVV 73
           IYRVPKRLL+++ KAY P+VISIGPFHH  Q +L+ T+Q KL  L+SYLHR+ M+VE VV
Sbjct: 59  IYRVPKRLLNMNRKAYTPQVISIGPFHHSNQSNLIVTQQHKLQALDSYLHRVKMTVEAVV 118

Query: 74  AKARNWESKARSCYAEHINMNSDDFVKMLLMDGCFIVEALII 115
              +NWE++ARSCY E I MN+D FV MLL+DGCF+V  LI+
Sbjct: 119 KITQNWENRARSCYGEPIKMNNDKFVTMLLLDGCFVVXFLIL 160

BLAST of Lag0021924 vs. ExPASy Swiss-Prot
Match: Q9SD53 (UPF0481 protein At3g47200 OS=Arabidopsis thaliana OX=3702 GN=At3g47200 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 7.6e-13
Identity = 40/106 (37.74%), Postives = 65/106 (61.32%), Query Frame = 0

Query: 13  CIYRVPKRLLSLDCKAYRPEVISIGPFHHGQKDLMGTEQLKLLCLNSYLHRINMS--VED 72
           CI+RVP+  ++L+ KAY+P+V+SIGP+H+G+K L   +Q K   L  +L         E+
Sbjct: 47  CIFRVPESFVALNPKAYKPKVVSIGPYHYGEKHLQMIQQHKPRLLQLFLDEAKKKDVEEN 106

Query: 73  VVAKA-RNWESKARSCYAEHINMNSDDFVKMLLMDGCFIVEALIIV 116
           V+ KA  + E K R  Y+E +     D + M+++DGCFI+   +I+
Sbjct: 107 VLVKAVVDLEDKIRKSYSEELK-TGHDLMFMMVLDGCFILMVFLIM 151

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022132118.15.0e-3058.62UPF0481 protein At3g47200-like [Momordica charantia][more]
XP_022158990.18.0e-2855.75UPF0481 protein At3g47200-like isoform X2 [Momordica charantia][more]
XP_022158992.18.0e-2855.75UPF0481 protein At3g47200-like isoform X3 [Momordica charantia][more]
XP_022158989.18.0e-2855.75UPF0481 protein At3g47200-like isoform X1 [Momordica charantia][more]
XP_022131634.11.4e-2762.75UPF0481 protein At3g47200-like [Momordica charantia][more]
Match NameE-valueIdentityDescription
Q9SD537.6e-1337.74UPF0481 protein At3g47200 OS=Arabidopsis thaliana OX=3702 GN=At3g47200 PE=2 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004158Protein of unknown function DUF247, plantPFAMPF03140DUF247coord: 14..113
e-value: 1.7E-30
score: 106.6
NoneNo IPR availablePANTHERPTHR31170BNAC04G53230D PROTEINcoord: 8..113
NoneNo IPR availablePANTHERPTHR31170:SF13BNAC04G53230D PROTEINcoord: 8..113

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0021924.1Lag0021924.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane