Lag0021923 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0021923
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr7: 13956839 .. 13957168 (-)
RNA-Seq ExpressionLag0021923
SyntenyLag0021923
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGATTGGAGACTCAACGCCAAGTCCAAGAGAGGATACCACCTCCACCACCACAACGTGTTGTAGTTGATAACATTCCCTATGAGCACGATTATGAGGATGATGAATCTAATGAACATGAGGATGACCAAGTTACATTAGTTGGGGCTCCAAGAGGAGGAGAAAGGCGTCTTGGTCGTGGCTTTCATAGAGCGAGAGGTCGAGGAAGAGGATATCAAAATTTCCAAAGGAGAGCTCCATGGGAAGAAGCTCACGTTGATCGTAACTTGGGGAGCATCAAATTGAAGCTTCCAAAGTTTTATGGAAAAACTGATCCAAAGGAGTGA

mRNA sequence

ATGGGAAGATTGGAGACTCAACGCCAAGTCCAAGAGAGGATACCACCTCCACCACCACAACGTGTTGTAGTTGATAACATTCCCTATGAGCACGATTATGAGGATGATGAATCTAATGAACATGAGGATGACCAAGTTACATTAGTTGGGGCTCCAAGAGGAGGAGAAAGGCGTCTTGGTCGTGGCTTTCATAGAGCGAGAGGTCGAGGAAGAGGATATCAAAATTTCCAAAGGAGAGCTCCATGGGAAGAAGCTCACGTTGATCGTAACTTGGGGAGCATCAAATTGAAGCTTCCAAAGTTTTATGGAAAAACTGATCCAAAGGAGTGA

Coding sequence (CDS)

ATGGGAAGATTGGAGACTCAACGCCAAGTCCAAGAGAGGATACCACCTCCACCACCACAACGTGTTGTAGTTGATAACATTCCCTATGAGCACGATTATGAGGATGATGAATCTAATGAACATGAGGATGACCAAGTTACATTAGTTGGGGCTCCAAGAGGAGGAGAAAGGCGTCTTGGTCGTGGCTTTCATAGAGCGAGAGGTCGAGGAAGAGGATATCAAAATTTCCAAAGGAGAGCTCCATGGGAAGAAGCTCACGTTGATCGTAACTTGGGGAGCATCAAATTGAAGCTTCCAAAGTTTTATGGAAAAACTGATCCAAAGGAGTGA

Protein sequence

MGRLETQRQVQERIPPPPPQRVVVDNIPYEHDYEDDESNEHEDDQVTLVGAPRGGERRLGRGFHRARGRGRGYQNFQRRAPWEEAHVDRNLGSIKLKLPKFYGKTDPKE
Homology
BLAST of Lag0021923 vs. NCBI nr
Match: XP_022157414.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 [Momordica charantia])

HSP 1 Score: 118.2 bits (295), Expect = 4.3e-23
Identity = 64/108 (59.26%), Postives = 76/108 (70.37%), Query Frame = 0

Query: 1   MGRLETQRQVQERIPPPPPQRVVVDNIPYEHDYEDDESNEHEDDQVTLVGAPRGGERRLG 60
           +GRLETQ Q + R+PPPP  RV+      E +YE D S+  EDDQ T++  PRGG+  +G
Sbjct: 37  IGRLETQNQAEGRVPPPPXXRVM-----DEDEYEGDGSDHWEDDQATVLAXPRGGDXHVG 96

Query: 61  RGFHRARGRGRGYQNFQRRAPWEEAHVDRNLGSIKLKLPKFYGKTDPK 109
            G  R RGRGRGY NFQ RAP   A VDRNLG+IKLKL KFYGKTDP+
Sbjct: 97  XGLDRGRGRGRGYHNFQ-RAPRANAQVDRNLGNIKLKLXKFYGKTDPE 138

BLAST of Lag0021923 vs. NCBI nr
Match: XP_022152309.1 (uncharacterized protein LOC111020057 [Momordica charantia])

HSP 1 Score: 87.8 bits (216), Expect = 6.2e-14
Identity = 52/82 (63.41%), Postives = 63/82 (76.83%), Query Frame = 0

Query: 30  EHDYEDDESNEHEDDQVTLVGAPRGGERRLGRGFHRA-RGRGRGYQ-NFQRRAPWEEAHV 89
           E++ E+  S++ EDDQVTL+   R G+RR G   HR  RGRGRG Q N+QRRAP EEA V
Sbjct: 9   ENESEEGWSDQLEDDQVTLLAVHRRGDRRPG---HRLDRGRGRGIQHNYQRRAPREEAQV 68

Query: 90  DRNLGSIKLKLPKFYGKTDPKE 110
           DRNLGSIKLK+ KF+GKTDP+E
Sbjct: 69  DRNLGSIKLKIQKFFGKTDPEE 87

BLAST of Lag0021923 vs. NCBI nr
Match: KAA0043652.1 (uncharacterized protein E6C27_scaffold320G001000 [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 1.4e-13
Identity = 49/107 (45.79%), Postives = 71/107 (66.36%), Query Frame = 0

Query: 3   RLETQRQVQERIPPPPPQRVVVDNIPYEHDYEDDESNEHEDDQVTLVGAPRGGERRLGRG 62
           R E + + +ER+PPP    +++++   ++  E D S++ +DDQVTL+G P    RR+G G
Sbjct: 34  RFEIENRARERMPPPLAPPMLINH--NDNQDEGDGSDDLDDDQVTLLGEP----RRVGHG 93

Query: 63  FHRARGRGRGYQNFQRRAPWEEAHVDRNLGSIKLKLPKFYGKTDPKE 110
             R RGRGR YQN QRRA  E +  + N+ +IK K+PKF+ KTDPKE
Sbjct: 94  VVRRRGRGRAYQNIQRRAQQEASQFECNMRAIKFKIPKFFRKTDPKE 134

BLAST of Lag0021923 vs. NCBI nr
Match: TYK09709.1 (uncharacterized protein E5676_scaffold447G001250 [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 1.4e-13
Identity = 49/107 (45.79%), Postives = 71/107 (66.36%), Query Frame = 0

Query: 3   RLETQRQVQERIPPPPPQRVVVDNIPYEHDYEDDESNEHEDDQVTLVGAPRGGERRLGRG 62
           R E + + +ER+PPP    +++++   ++  E D S++ +DDQVTL+G P    RR+G G
Sbjct: 14  RFEIENRARERMPPPLAPPMLINH--NDNQDEGDGSDDLDDDQVTLLGEP----RRVGHG 73

Query: 63  FHRARGRGRGYQNFQRRAPWEEAHVDRNLGSIKLKLPKFYGKTDPKE 110
             R RGRGR YQN QRRA  E +  + N+ +IK K+PKF+ KTDPKE
Sbjct: 74  VVRRRGRGRAYQNIQRRAQQEASQFECNMRAIKFKIPKFFRKTDPKE 114

BLAST of Lag0021923 vs. NCBI nr
Match: KAA0047036.1 (uncharacterized protein E6C27_scaffold829G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 2.4e-13
Identity = 47/107 (43.93%), Postives = 69/107 (64.49%), Query Frame = 0

Query: 3   RLETQRQVQERIPPPPPQRVVVDNIPYEHDYEDDESNEHEDDQVTLVGAPRGGERRLGRG 62
           RLE + + +ER+PPP    + +++    + YE D  ++ +DDQVTL+  P    RR+G G
Sbjct: 10  RLEIENRARERMPPPLAPLMAINH--NNNQYEGDGLDDLDDDQVTLLVEP----RRVGHG 69

Query: 63  FHRARGRGRGYQNFQRRAPWEEAHVDRNLGSIKLKLPKFYGKTDPKE 110
             R RG G+ YQN QRR   E   ++RN+ +IK K+PKF+GKTDP+E
Sbjct: 70  VVRRRGHGKAYQNIQRRTQQETPQLERNMAAIKFKIPKFFGKTDPEE 110

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022157414.14.3e-2359.26LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 [Momordica charantia][more]
XP_022152309.16.2e-1463.41uncharacterized protein LOC111020057 [Momordica charantia][more]
KAA0043652.11.4e-1345.79uncharacterized protein E6C27_scaffold320G001000 [Cucumis melo var. makuwa][more]
TYK09709.11.4e-1345.79uncharacterized protein E5676_scaffold447G001250 [Cucumis melo var. makuwa][more]
KAA0047036.12.4e-1343.93uncharacterized protein E6C27_scaffold829G00200 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..61

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0021923.1Lag0021923.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding