Lag0021872 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0021872
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotransposon gag protein
Location	chr7: 13340216 .. 13342429 (+)
RNA-Seq Expression	Lag0021872
Synteny	Lag0021872

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGTTCATAGTAGCATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTGAAGCCAAATCTCATTATCTTGACCAATCCTGCAAATGAAGGATCTGATCAAGACCATGACAAAATAAGAGCTTTTAAATGTAAAAGCTCCTTGTCGCAAGAGCCTAAACTGCATGATCTCCTAGCCCACACGAGCTTAAAAGGTGAGTGCAAAAAAAAACTTGAACTACGTTATGACTTGATCCCTTTTCTTCAAAGGGTATGTAGGCAGCTTAAAGAAAACTTTAAGTTCAGTCTCTGCAAACAAAAAAAAAAAAAAGGAAAGTGCAACAAATATTGAAGCACGACGATATAAATTGAGGAAATTCATCACTAGTGGGGGCAACACAGCGAATGGAAGTTGCTTCCTCCAAGTTCGAAGGTTCCCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGATCCTTCCCTCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCTGCAGTTCTTCCTCCAGTTCGAAGGTTCTCACGGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCCTCACAATTCGAAGGTTCTCACGCGCTTCGCTGTAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCGCTCATGCGCTTCGCTGCAGTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTGCGATCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTTCTTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGCTTCGTTGCATTTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGTTTCGCTGCATTTCCTTCCCCCAAATTCGAAGGTTCTCACGCACTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGCACTTCGCTGCAGTTCCTTCCTCCAAGTTCAAAGGTTCTCACGTCGCTTCGCTGCGCTCATGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTGCGATCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCAAGTTCAAGGTTCTCATGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTACGCGCTTCGTTGCATTTCCTTCCCCCCAAATTCGAAGGTTCTCAGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCCTTTGCAATTCCTTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAATTCGAAGGTTCTCACGCGCTTCGCTTGCAATTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCATGCGCTTCGTTGCAGTTCCTTCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGCCTTCGCTGCAGTTCCTTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCACTCCAGCGCTACTTCCTAAAGTCCAAAGACGTCAATTGTCCTCACGCTGCGCTGCTTCCTTCTCCAAGTTCGAGGGTCCTCATGCTACGCTCGGCTACATTGCTGCGCTACTTCCAAAGTCCAAAGACGTCAATTGTCCCTGCACTCATGCTGAAAAGGGCATGGCGGCGACACAAGTCCAAGGACATGTCCCAAAGCGAGAACATGTCCCTGTACTCATGCTGA

mRNA sequence

ATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGTTCATAGTAGCATCCCGTCACGTGAAGCCAAATCTCATTATCTTGACCAATCCTGCAAATGAAGGATCTGATCAAGACCATGACAAAATAAGAGCTTTTAAATGTAAAAGCTCCTTGTCGCAAGAGCCTAAACTGCATGATCTCCTAGCCCACACGAGCTTAAAAGCGAATGGAAGTTGCTTCCTCCAAGTTCGAAGGTTCCCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGATCCTTCCCTCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCTGCAGTTCTTCCTCCAGTTCGAAGGTTCTCACGGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCCTCACAATTCGAAGGTTCTCACGCGCTTCGCTGTAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCGCTCATGCGCTTCGCTGCAGTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTGCGATCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTTCTTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGCTTCGTTGCATTTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGTTTCGCTGCATTTCCTTCCCCCAAATTCGAAGGTTCTCACGCACTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGCACTTCGCTGCAGTTCCTTCCTCCAAGTTCAAAGGTTCTCACGTCGCTTCGCTGCGCTCATGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTGCGATCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCAAGTTCAAGGTTCTCATGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTACGCGCTTCGTTGCATTTCCTTCCCCCCAAATTCGAAGGTTCTCAGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCCTTTGCAATTCCTTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAATTCGAAGGTTCTCACGCGCTTCGCTTGCAATTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCATGCGCTTCGTTGCAGTTCCTTCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGCCTTCGCTGCAGTTCCTTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCACTCCAGCGCTACTTCCTAAAGTCCAAAGACGTCAATTGTCCTCACGCTGCGCTGCTTCCTTCTCCAAGTTCGAGGGTCCTCATGCTACGCTCGGCTACATTGCTGCGCTACTTCCAAAGTCCAAAGACGTCAATTGTCCCTGCACTCATGCTGAAAAGGGCATGGCGGCGACACAAGTCCAAGGACATGTCCCAAAGCGAGAACATGTCCCTGTACTCATGCTGA

Coding sequence (CDS)

ATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGTTCATAGTAGCATCCCGTCACGTGAAGCCAAATCTCATTATCTTGACCAATCCTGCAAATGAAGGATCTGATCAAGACCATGACAAAATAAGAGCTTTTAAATGTAAAAGCTCCTTGTCGCAAGAGCCTAAACTGCATGATCTCCTAGCCCACACGAGCTTAAAAGCGAATGGAAGTTGCTTCCTCCAAGTTCGAAGGTTCCCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGATCCTTCCCTCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCTGCAGTTCTTCCTCCAGTTCGAAGGTTCTCACGGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCCTCACAATTCGAAGGTTCTCACGCGCTTCGCTGTAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCGCTCATGCGCTTCGCTGCAGTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTGCGATCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTTCTTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGCTTCGTTGCATTTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGTTTCGCTGCATTTCCTTCCCCCAAATTCGAAGGTTCTCACGCACTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGCACTTCGCTGCAGTTCCTTCCTCCAAGTTCAAAGGTTCTCACGTCGCTTCGCTGCGCTCATGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTGCGATCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCAAGTTCAAGGTTCTCATGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTACGCGCTTCGTTGCATTTCCTTCCCCCCAAATTCGAAGGTTCTCAGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCCTTTGCAATTCCTTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAATTCGAAGGTTCTCACGCGCTTCGCTTGCAATTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCATGCGCTTCGTTGCAGTTCCTTCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGCCTTCGCTGCAGTTCCTTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCACTCCAGCGCTACTTCCTAAAGTCCAAAGACGTCAATTGTCCTCACGCTGCGCTGCTTCCTTCTCCAAGTTCGAGGGTCCTCATGCTACGCTCGGCTACATTGCTGCGCTACTTCCAAAGTCCAAAGACGTCAATTGTCCCTGCACTCATGCTGAAAAGGGCATGGCGGCGACACAAGTCCAAGGACATGTCCCAAAGCGAGAACATGTCCCTGTACTCATGCTGA

Protein sequence

MSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKFIVASRHVKPNLIILTNPANEGSDQDHDKIRAFKCKSSLSQEPKLHDLLAHTSLKANGSCFLQVRRFPRASLQFLPPKFEGSHALRCSSFLTVRRFSRASLQILPSKFEGSHVASLQFLPPSSKVLTRFCSSSSSSKVLTASLQFLPPSSKVLTRFAAVPSSKLKVLTRFVAVPSSQFEGSHALRCSSFPQVRRFSRRFAALMRFAAVLPPSLKVLTSLRCDPSSKFEGSHALRSAISSPSSKVLTRFVQFLPPNSKVLTRFVAFPSPKFEGSHAFRCISFPQIRRFSRTSLQFLPPSSKVLTHFAAVPSSKFKGSHVASLRSCASLQFLPPSLKVLTSLRCDPSSKFEGSHALRSAIPSPSSRFSCASCSSFLQIRRFYALRCISFPPNSKVLSASLQFLPPSSKVLTRFLCNSFPKFEGSHALRAVPSSNSKVLTRFACNSFPQVRRFSRASCSSFLQIRRFSCASLQFLPPNSKVLTRFAAVPSPKFEGSHALRCSSFPQVRRFSRLRCSSFPKFEGSHALRALQRYFLKSKDVNCPHAALLPSPSSRVLMLRSATLLRYFQSPKTSIVPALMLKRAWRRHKSKDMSQSENMSLYSC

Homology

[Close]

BLAST of Lag0021872 vs. NCBI nr
Match: KAA0050736.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYJ95700.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 1.7e-10
Identity = 53/108 (49.07%), Postives = 64/108 (59.26%), Query Frame = 0


Query: 1   MSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKFI 60
           MST TR SAF+RLS+S SKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K  
Sbjct: 415 MSTYTRTSAFKRLSISRSKKHRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIY 474

Query: 61  --VASR---------------HVKPNLIILTNPANEGSDQDHDKIRAF 92
             V SR                VKP  II TNP NEG ++  D+ + F
Sbjct: 475 SRVPSRIKRKLSIDINTEGSLTVKPRFIIFTNPINEGDEKILDENKRF 522

[Close]

BLAST of Lag0021872 vs. NCBI nr
Match: KAA0065984.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK28929.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 3.9e-10
Identity = 50/100 (50.00%), Postives = 60/100 (60.00%), Query Frame = 0


Query: 2   STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKF-- 61
           ST TR SAF+RLS+STSKK R STS FDRLK+ NDQ +R+M +L+ K F E N D K   
Sbjct: 327 STYTRTSAFKRLSISTSKKHRPSTSAFDRLKMKNDQQQREMKSLKAKPFHEENDDDKIHS 386

Query: 62  ------------IVASRHVKPNLIILTNPANEGSDQDHDK 88
                       I  S  VKP  II TNP NEG ++  D+
Sbjct: 387 HIPSRKLSVDINIEGSLTVKPRFIIFTNPINEGDEKILDE 426

[Close]

BLAST of Lag0021872 vs. NCBI nr
Match: KAA0057874.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 8.7e-10
Identity = 52/103 (50.49%), Postives = 62/103 (60.19%), Query Frame = 0


Query: 2   STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKF-- 61
           ST TR SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M  L+ K F E N D K   
Sbjct: 13  STCTRTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKTLKEKPFHEENDDDKIHT 72

Query: 62  IVASR---------------HVKPNLIILTNPANEGSDQDHDK 88
            V+SR                VKP  II TNP NEG ++  D+
Sbjct: 73  RVSSRMKRKLSVDINTEGSLTVKPRFIIFTNPINEGDEKILDE 115

[Close]

BLAST of Lag0021872 vs. NCBI nr
Match: TYK02147.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 8.7e-10
Identity = 51/100 (51.00%), Postives = 61/100 (61.00%), Query Frame = 0


Query: 2   STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSD----- 61
           S STR  AF+RLS+STSKK R STS FDRLK+TNDQ +R+M  L+ KLF E N+D     
Sbjct: 165 SISTRNFAFKRLSISTSKKDRPSTSAFDRLKMTNDQQQREMKTLKAKLFLEENNDDDKIH 224

Query: 62  --------KKFIV-----ASRHVKPNLIILTNPANEGSDQ 84
                   +K  V      S  VKP LII TNP N+G +Q
Sbjct: 225 NHIPSRMKRKLSVDISTEGSLTVKPRLIIFTNPTNKGDEQ 264

[Close]

BLAST of Lag0021872 vs. NCBI nr
Match: TYK18884.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 1.1e-09
Identity = 50/103 (48.54%), Postives = 60/103 (58.25%), Query Frame = 0


Query: 2   STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKF-- 61
           ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K   
Sbjct: 106 STYARTSAFKRLSISTSKKHRPSTSTFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHS 165

Query: 62  ---------------IVASRHVKPNLIILTNPANEGSDQDHDK 88
                             S  VKP LII TNP NEG ++  D+
Sbjct: 166 RVPSRMKRKLSIDINTKGSLIVKPRLIIFTNPINEGDEKILDE 208

[Close]

BLAST of Lag0021872 vs. ExPASy TrEMBL
Match: A0A5A7U974 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00280 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 8.5e-11
Identity = 53/108 (49.07%), Postives = 64/108 (59.26%), Query Frame = 0


Query: 1   MSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKFI 60
           MST TR SAF+RLS+S SKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K  
Sbjct: 415 MSTYTRTSAFKRLSISRSKKHRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIY 474

Query: 61  --VASR---------------HVKPNLIILTNPANEGSDQDHDKIRAF 92
             V SR                VKP  II TNP NEG ++  D+ + F
Sbjct: 475 SRVPSRIKRKLSIDINTEGSLTVKPRFIIFTNPINEGDEKILDENKRF 522

[Close]

BLAST of Lag0021872 vs. ExPASy TrEMBL
Match: A0A5A7VFA5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G00130 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.9e-10
Identity = 50/100 (50.00%), Postives = 60/100 (60.00%), Query Frame = 0


Query: 2   STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKF-- 61
           ST TR SAF+RLS+STSKK R STS FDRLK+ NDQ +R+M +L+ K F E N D K   
Sbjct: 327 STYTRTSAFKRLSISTSKKHRPSTSAFDRLKMKNDQQQREMKSLKAKPFHEENDDDKIHS 386

Query: 62  ------------IVASRHVKPNLIILTNPANEGSDQDHDK 88
                       I  S  VKP  II TNP NEG ++  D+
Sbjct: 387 HIPSRKLSVDINIEGSLTVKPRFIIFTNPINEGDEKILDE 426

[Close]

BLAST of Lag0021872 vs. ExPASy TrEMBL
Match: A0A5D3BRW2 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00340 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 4.2e-10
Identity = 51/100 (51.00%), Postives = 61/100 (61.00%), Query Frame = 0


Query: 2   STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSD----- 61
           S STR  AF+RLS+STSKK R STS FDRLK+TNDQ +R+M  L+ KLF E N+D     
Sbjct: 165 SISTRNFAFKRLSISTSKKDRPSTSAFDRLKMTNDQQQREMKTLKAKLFLEENNDDDKIH 224

Query: 62  --------KKFIV-----ASRHVKPNLIILTNPANEGSDQ 84
                   +K  V      S  VKP LII TNP N+G +Q
Sbjct: 225 NHIPSRMKRKLSVDISTEGSLTVKPRLIIFTNPTNKGDEQ 264

[Close]

BLAST of Lag0021872 vs. ExPASy TrEMBL
Match: A0A5A7URU7 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G001720 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 4.2e-10
Identity = 52/103 (50.49%), Postives = 62/103 (60.19%), Query Frame = 0


Query: 2   STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKF-- 61
           ST TR SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M  L+ K F E N D K   
Sbjct: 13  STCTRTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKTLKEKPFHEENDDDKIHT 72

Query: 62  IVASR---------------HVKPNLIILTNPANEGSDQDHDK 88
            V+SR                VKP  II TNP NEG ++  D+
Sbjct: 73  RVSSRMKRKLSVDINTEGSLTVKPRFIIFTNPINEGDEKILDE 115

[Close]

BLAST of Lag0021872 vs. ExPASy TrEMBL
Match: A0A5A7V9F3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold258G00080 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.5e-10
Identity = 49/100 (49.00%), Postives = 58/100 (58.00%), Query Frame = 0


Query: 1   MSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKF- 60
           MST TR SAF+RLS+ TSKK R STS FDRLK+TNDQ +R+  +L+ K F E N D K  
Sbjct: 12  MSTYTRTSAFKRLSIFTSKKDRPSTSAFDRLKMTNDQQQRETKSLKAKPFHEENDDDKIH 71

Query: 61  ----------------IVASRHVKPNLIILTNPANEGSDQ 84
                           I  S  VKP  II TNP NEG ++
Sbjct: 72  RRVPSRMKRKLSVDINIEGSLIVKPRFIIFTNPINEGDEK 111

The following BLAST results are available for this feature:

BLAST of Lag0021872 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050736.1	1.7e-10	49.07	retrotransposon gag protein [Cucumis melo var. makuwa] >TYJ95700.1 retrotranspos...	[more]
KAA0065984.1	3.9e-10	50.00	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK28929.1 ty3-gyp...	[more]
KAA0057874.1	8.7e-10	50.49	gag protease polyprotein [Cucumis melo var. makuwa]	[more]
TYK02147.1	8.7e-10	51.00	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
TYK18884.1	1.1e-09	48.54	gag protease polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Lag0021872 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0021872 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U974	8.5e-11	49.07	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7VFA5	1.9e-10	50.00	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3BRW2	4.2e-10	51.00	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7URU7	4.2e-10	50.49	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5A7V9F3	5.5e-10	49.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Lag0021872 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0021872.1	Lag0021872.1	mRNA