Lag0021765 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0021765
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	chr7: 11664188 .. 11664538 (-)
RNA-Seq Expression	Lag0021765
Synteny	Lag0021765

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGACAGAGGAGTCCGCACTGGAGAAACAATCCAAGGTTGATGAGTCTCTCAATATTCCTCATCTTGCTATGGCTGCAAATCTTGAAACTCAAGGAGGCCGTGGAAACTGGCACAATAACAATCGAGGAGGTCGCAGTGGCGGATTTGATAATAATCGTGGTGGTCGGGGCGTTTGCAGTGGCTTCTTTCCTCAAAACAGACCTTCACCGTCTGGTAATACTCCTCCTTCACTTCCTCAAGGTCAGTATTCCAATAAGGTAACTTGCCAGATTTGTCATCGGTATGGACACAATGCCCTAGACTGCTACAATCGTATGAATTACTCATACCCTCAAGGTCAGTATTAA

mRNA sequence

ATGAAGACAGAGGAGTCCGCACTGGAGAAACAATCCAAGGTTGATGAGTCTCTCAATATTCCTCATCTTGCTATGGCTGCAAATCTTGAAACTCAAGGAGGCCGTGGAAACTGGCACAATAACAATCGAGGAGGTCGCAGTGGCGGATTTGATAATAATCGTGGTGGTCGGGGCGTTTGCAGTGGCTTCTTTCCTCAAAACAGACCTTCACCGTCTGGTAATACTCCTCCTTCACTTCCTCAAGGTCAGTATTCCAATAAGGTAACTTGCCAGATTTGTCATCGGTATGGACACAATGCCCTAGACTGCTACAATCGTATGAATTACTCATACCCTCAAGGTCAGTATTAA

Coding sequence (CDS)

ATGAAGACAGAGGAGTCCGCACTGGAGAAACAATCCAAGGTTGATGAGTCTCTCAATATTCCTCATCTTGCTATGGCTGCAAATCTTGAAACTCAAGGAGGCCGTGGAAACTGGCACAATAACAATCGAGGAGGTCGCAGTGGCGGATTTGATAATAATCGTGGTGGTCGGGGCGTTTGCAGTGGCTTCTTTCCTCAAAACAGACCTTCACCGTCTGGTAATACTCCTCCTTCACTTCCTCAAGGTCAGTATTCCAATAAGGTAACTTGCCAGATTTGTCATCGGTATGGACACAATGCCCTAGACTGCTACAATCGTATGAATTACTCATACCCTCAAGGTCAGTATTAA

Protein sequence

MKTEESALEKQSKVDESLNIPHLAMAANLETQGGRGNWHNNNRGGRSGGFDNNRGGRGVCSGFFPQNRPSPSGNTPPSLPQGQYSNKVTCQICHRYGHNALDCYNRMNYSYPQGQY

Homology

[Close]

BLAST of Lag0021765 vs. NCBI nr
Match: XP_022150845.1 (uncharacterized protein LOC111018892 [Momordica charantia])

HSP 1 Score: 68.9 bits (167), Expect = 3.2e-08
Identity = 46/116 (39.66%), Postives = 64/116 (55.17%), Query Frame = 0


Query: 1   MKTEESALEKQSKVDESLNIPHLAMAANLETQGGRGNWHNNNRGGRSGGFDNNRGGRGVC 60
           MK+EESA+EKQ K ++ +  P+   A++ ++Q     +H N    R  G +N RG     
Sbjct: 240 MKSEESAIEKQMKREDLVTQPNALFASSPQSQNRTSAFHPNQSHDRGRGKNNGRGKANFA 299

Query: 61  SGFFPQNRPSPSGNTPPSLPQGQYSNKVTCQICHRYGHNALDCYNRMNYSYPQGQY 117
             F  Q R   SGN   S    Q  N+  CQIC + GH ALDCYNRMN+ + QG++
Sbjct: 300 PTFTNQGRGRSSGNFFTSF---QADNRSPCQICGKLGHTALDCYNRMNFHF-QGRH 351

[Close]

BLAST of Lag0021765 vs. NCBI nr
Match: KAE8645659.1 (hypothetical protein Csa_020439 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 1.5e-05
Identity = 46/125 (36.80%), Postives = 59/125 (47.20%), Query Frame = 0


Query: 1   MKTEESALEKQSKVDESLNIPH---------LAMAANLETQGGRGNWHNNNRGGRSGGFD 60
           ++ EESAL KQSK D+S N P          L+ A        RGN H  N G     FD
Sbjct: 214 LRAEESALAKQSKCDDSYNQPTVLLSSSQSLLSCAPTFNNNFVRGNGHGKNYGHGRFSFD 273

Query: 61  NNRGGRGVCSGFFPQNRPSPSGNTPPSLPQGQYSNKVTCQICHRYGHNALDCYNRMNYSY 117
               G G+      + +P              + N  TCQIC R GH ALDC+NRMNY++
Sbjct: 274 AQTRGHGLSQ----EQKP-------------VHDNHATCQICSRRGHTALDCFNRMNYNF 320

[Close]

BLAST of Lag0021765 vs. NCBI nr
Match: XP_011658579.1 (uncharacterized protein LOC105436058 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 1.5e-05
Identity = 46/125 (36.80%), Postives = 59/125 (47.20%), Query Frame = 0


Query: 1   MKTEESALEKQSKVDESLNIPH---------LAMAANLETQGGRGNWHNNNRGGRSGGFD 60
           ++ EESAL KQSK D+S N P          L+ A        RGN H  N G     FD
Sbjct: 214 LRAEESALAKQSKCDDSYNQPTVLLSSSQSLLSCAPTFNNNFVRGNGHGKNYGHGRFSFD 273

Query: 61  NNRGGRGVCSGFFPQNRPSPSGNTPPSLPQGQYSNKVTCQICHRYGHNALDCYNRMNYSY 117
               G G+      + +P              + N  TCQIC R GH ALDC+NRMNY++
Sbjct: 274 AQTRGHGLSQ----EQKP-------------VHDNHATCQICSRRGHTALDCFNRMNYNF 320

[Close]

BLAST of Lag0021765 vs. NCBI nr
Match: KAA8537769.1 (hypothetical protein F0562_027652 [Nyssa sinensis])

HSP 1 Score: 59.3 bits (142), Expect = 2.5e-05
Identity = 46/120 (38.33%), Postives = 60/120 (50.00%), Query Frame = 0


Query: 1   MKTEESALEKQSKVDESLNIPHLAMAANLET--QGGRGNWHNNNRG-GRSGGFDNNRGGR 60
           +K EE  +E   K + S   P   MA N        RG   +N  G GR  G  +NRGGR
Sbjct: 242 LKIEEQTIESVHKQNNSPPFPGAMMATNYRPNFSSNRGYSPSNFSGRGRGRGKFSNRGGR 301

Query: 61  GVCSG------FFPQNRPSPSGNTPPSLPQGQYSNKVTCQICHRYGHNALDCYNRMNYSY 112
               G      F   N P P+     S  +  YS+ V CQIC++ GH+ALDCY+RM++SY
Sbjct: 302 MHSFGRFQSPNFGQSNLPYPTKQPQQSNQRSNYSHPVVCQICNKNGHSALDCYHRMDFSY 361

[Close]

BLAST of Lag0021765 vs. NCBI nr
Match: KAG6588985.1 (Retrovirus-related Pol polyprotein from transposon RE1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.4 bits (137), Expect = 9.6e-05
Identity = 42/111 (37.84%), Postives = 56/111 (50.45%), Query Frame = 0


Query: 1   MKTEESALEKQSKVDESLNIPHLAMAANLETQGGRGNWHNNNRGGRSGGFDNNRGGRGVC 60
           +K EESAL KQSK D+    P   +A++         ++NN   GR  G  +  G    C
Sbjct: 202 LKAEESALAKQSKRDDLCKQPTALLASSQSLMSYASTFNNNFVRGRGRGRGHGHG----C 261

Query: 61  SGFFPQNRPSPSGNTPPSLPQGQYSNKVTCQICHRYGHNALDCYNRMNYSY 112
           S F  Q R   S      +    +S   +CQIC R GH ALDC+NRMNY++
Sbjct: 262 SSFDTQGRGGGSSQQQQLVVANNHS---SCQICLRRGHIALDCFNRMNYNF 305

The following BLAST results are available for this feature:

BLAST of Lag0021765 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150845.1	3.2e-08	39.66	uncharacterized protein LOC111018892 [Momordica charantia]	[more]
KAE8645659.1	1.5e-05	36.80	hypothetical protein Csa_020439 [Cucumis sativus]	[more]
XP_011658579.1	1.5e-05	36.80	uncharacterized protein LOC105436058 [Cucumis sativus]	[more]
KAA8537769.1	2.5e-05	38.33	hypothetical protein F0562_027652 [Nyssa sinensis]	[more]
KAG6588985.1	9.6e-05	37.84	Retrovirus-related Pol polyprotein from transposon RE1, partial [Cucurbita argyr...	[more]

BLAST of Lag0021765 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..48
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 73..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0021765.1	Lag0021765.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding