Lag0021655 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0021655
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr7: 10424707 .. 10427852 (-)
RNA-Seq Expression	Lag0021655
Synteny	Lag0021655

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGCCTCCACCTCAAATCATTGTCATGTTGCCTCCTCCATGTCTTAGCTATGTTGCCTCTTCCTCCAAGCCACTACCATGTCGCCTCTTCCTTAATGTCACCGACATGTTGCCTCGTCTAAGCCACTGCCATGTCGCATCCTCCAAGCCACTGCCATGTCGCATCCACCAAGCCACTGCCAAGTCGGCTCAAGCCAATGCCATGTCAGTGGCTCACAATATTGTCCAAGCCACAACCTTGTTTCATCCTCCAAGCCACTTCCAAGTCACCGATATGTCACCTCTACCACGCAACTACCAAGTCGACGCCTTGCTCGTAAGCTGGTCCTCACTTACAAGTTTCCTTCCTTTCCATAAAAATTTGATTCTCTTGCATTTACCTGTTAAAAAAGTCATGTAACATACAAAGAGAATCTCAAAGTAAAAAAGATTCGAAAATATGAATCTGTTCGACTCTTTGAGCTGAATGTTGTCTTTGCATGTAAATTATTATTGGGCAAATATTTTTAATAGTAAACAAAACAAAAGATGAAAAACCATATGATTTAAAGCTTGGGAGTGAAGATAGAAGTGAGTCTTCAGTAAAGCTTGGTGCTTTTGAAAAAAAAGATCGAAAAGTGAGTCTGAAGACATGAATTGGTCGATTACTGTCAACTGGGTTTCATATCTCCCCATTTTCCATTCTTCTTTTCTCTCCATTTTCCACTCCTTTTGGTATTGTTCTTCTATTGTCTCTCCTTCTACCTCCATTTTTTGTTCCTCCTTTTGAAACTTCCTTCTTGTGCCTGTTTTCCAGAATTTTTTCCCTTTCTGTTTTAACCATCTTCCTCATTTCATTAATTATTTTCTTTTTGTATCTCATTTTCCCTTTTTTTTTCTGCTCAAGAAAAATCCACCGATAGTCAATTATCAAAGCCAATATCAGGCTGAAATCTTAAGTGACAAAAGCAAAATCATGATCTTTTCCACACTCAAATATAAAAAAGAAAACTCATAAATGAAAACCTTTCACAAACCACGAACGTTTGAGAACTATAAGTAATCTTTTTTTCCTCTCCATTTCCTTCGTATTTGAAGAAACATGGTACTTTCACCTTTGATATAGAACACCCACGCTTTTCATTCACACTTCAGATGCAAACGTGTTTGTAACACAATCAAGGTCAAAATATTTATTTTCCTAGGACTGTCCATTTTCCAAAAAGCTTTTACAAACCCTCTTGAAAGTTTTGAAAAGTTGACTATGAACATTTTGTTCATCTTCTTTTGTTCCCATTTTCCACTCCTCCGTCTTTTTTCTTTTCTAATCTTTGTCACGTTTTTCTATTATTCCATATCTCTCTTTTCCTTTATCTTCTTTACCCTTCCTCTTTTTCTTAATTTTCCGTTATTTTTCTTTCGGATTTTCCTTGTTGTACATCTTTTTTATTTTCTTTTTCTACTATTCCTTCATTACTTTCTTCTTTTCCTTCATTTTCTCTCTTGACAAAAAAAAAAAAAAAAACCCATCACAGCAACTTTTCAACCAAACAAACGAAAAAAAAAAACCCATCACAGCAACTTTTCAACCAAACAAACGATTAAAGTAAGCTCTACTACTCAAATAGAGAATATCAACACACAAATCAATGAGAATGTGATAAGGATTGACCTCCTCTGTGTCATTGCCCGTTCCATTCAAAGACATAGGAAATAAGTTTTGAAAAAGACAAAAAAGGTTTTATCATTTACAATGACTTGGAAGAACCATCATCCCATCAAGCAAGCAAACCGAAATTATCAACAAGAGATTGATAAAGACTCAGCCTTCGAAATAGGTAGTCACAATACCTGAAGAAATAGAAAACAAGTTTATTATAGAATTAAACGAAAAACAATATTCACAAAAGCGAAAAAAAATCACAGAAACTGTCAAAATCCAAATGCAAGTTGTAAATTGAAAGAAAACGAGAACATAAAAGGGGAACAAAATGCCTCCTCCTGGAAGTCACCTTCAAGCGTCCTCCTCTAAGTCACAACCATGTTGCCTCCTACACAAATTCATCGCCAAGTTGTCACACTAATGTATTCGCCATGTTGCCTCCTCCCCAAAGCCACTGACACGTGTCCTCGTTCATGTCTTTACCATGTTACGAACACTTCCAAACCACTGCCATGTCACCTGCAACAAACATCCCTGTCATGTTGCCACCTCAATGTCATCGCCATGTTGCCTCCTTCAAGCCACTACCATGTCATCTATTCATCAAAGTCACCACCATGTTGCCTACTCCAAGTCACCTCCAAGCCTTCTTTTACAAGTCAGTACATCAACCTCCTTAAACTCACAAGCATGTCAATGCATAAACCACCCCTCAATGATTGCCACGTCGCACCCTCCGCATCTCTTCCAAGTCAATGCCATCAGCAGCCTCCAAAGTCATCTTCAAACATCCTTCTCCAAGTCACCACCATAAAGTTTCCTCCTCCAAGTATCTCAAAGTCACCTCCATGCCACTATGATGTTGCCTCCTCAAGTCCCTTGCAAGCCCCCTTTTCTAGGTAGCCGCCATGTCGCCTCCTACTCAAAGTCACAAACAAGTTGCCATGTCGCCTCCTACTCAAAGTCACAAACAAGTTGCCACGTCGATGCTTCCGCCATATTGCCCCCTTCTCCAAGCCACTGACATATCGCCTCTTCGTCAAAGTCACCGCCATGTTGCCTCCTCCATTTCTTTCCAACCTTACGTCCTCCTCCAAACAAAAGCAATGCCACCTCGACCTCAAATCACTGCCATGTTGCCACCTCCGTGCCTTCGCCATATTGCCTCATCCTCCAAGCAACTGCCATGTCTCCCATATCTTAAAGTCACCCCCATGTTGCCTCCTCCAAGCCACTGCCATGTAATCTCGATAAAGTCTTCACTATGTTGCCTCCTCCTAGTCACCTTCAAGCCTTCTTTTCCAAGTCATTACATCAGCCTCCTCGAAGTCACAAGTATGTCGTTGCATAATCCTTCCCCAAATAATTGCCTTGTCGCTTCCTCCCAAGCACCTCCAACCCTGCTCCTCCAAAATCACCGCCAAGTCGCCTCATTCTCAAAGTCACTGCCAAGTTGCCACGTCGATGTCTTCAACATGTTGCCTCCTTCTCTAAGCCACTGA

mRNA sequence

ATGTTGCCTCCACCTCAAATCATTGTCATGTTGCCTCCTCCATGTCTTAGCTATGTTGCCTCTTCCTCCAAGCCACTACCATGTCGCCTCTTCCTTAATGTCACCGACATGTTGCCTCGTCTAAGCCACTGCCATGTCGCATCCTCCAAGCCACTGCCATGTCGCATCCACCAAGCCACTGCCAAGTCGGCTCAAGCCAATGCCATGTCAGTGGCTCACAATATTGTCCAAGCCACAACCTTGTTTCATCCTCCAAGCCACTTCCAAGTCACCGATATGTCACCTCTACCACGCAACTACCAAGTCGACGCCTTGCTCGTAGCCGCCATGTCGCCTCCTACTCAAAGTCACAAACAAGTTGCCATGTCGCCTCCTACTCAAAGTCACAAACAAGTTGCCACGTCGATGCTTCCGCCATATTGCCCCCTTCTCCAAGCCACTGACATATCGCCTCTTCGTCAAAGTCACCGCCATGTTGCCTCCTCCATTTCTTTCCAACCTTACGTCCTCCTCCAAACAAAAGCAATGCCACCTCGACCTCAAATCACTGCCATGTTGCCACCTCCGTGCCTTCGCCATATTGCCTCATCCTCCAAGCAACTGCCATGTCTCCCATATCTTAAAGTCACCCCCATGTTGCCTCCTCCAAGCCACTGCCATGTAATCTCGATAAAGTCTTCACTATGTTGCCTCCTCCTAGTCACCTTCAAGCCTTCTTTTCCAAGTCATTACATCAGCCTCCTCGAAGTCACAAGTATGTCGTTGCATAATCCTTCCCCAAATAATTGCCTTGTCGCTTCCTCCCAAGCACCTCCAACCCTGCTCCTCCAAAATCACCGCCAAGTCGCCTCATTCTCAAAGTCACTGCCAAGTTGCCACGTCGATGTCTTCAACATGTTGCCTCCTTCTCTAAGCCACTGA

Coding sequence (CDS)

ATGTTGCCTCCACCTCAAATCATTGTCATGTTGCCTCCTCCATGTCTTAGCTATGTTGCCTCTTCCTCCAAGCCACTACCATGTCGCCTCTTCCTTAATGTCACCGACATGTTGCCTCGTCTAAGCCACTGCCATGTCGCATCCTCCAAGCCACTGCCATGTCGCATCCACCAAGCCACTGCCAAGTCGGCTCAAGCCAATGCCATGTCAGTGGCTCACAATATTGTCCAAGCCACAACCTTGTTTCATCCTCCAAGCCACTTCCAAGTCACCGATATGTCACCTCTACCACGCAACTACCAAGTCGACGCCTTGCTCGTAGCCGCCATGTCGCCTCCTACTCAAAGTCACAAACAAGTTGCCATGTCGCCTCCTACTCAAAGTCACAAACAAGTTGCCACGTCGATGCTTCCGCCATATTGCCCCCTTCTCCAAGCCACTGACATATCGCCTCTTCGTCAAAGTCACCGCCATGTTGCCTCCTCCATTTCTTTCCAACCTTACGTCCTCCTCCAAACAAAAGCAATGCCACCTCGACCTCAAATCACTGCCATGTTGCCACCTCCGTGCCTTCGCCATATTGCCTCATCCTCCAAGCAACTGCCATGTCTCCCATATCTTAAAGTCACCCCCATGTTGCCTCCTCCAAGCCACTGCCATGTAATCTCGATAAAGTCTTCACTATGTTGCCTCCTCCTAGTCACCTTCAAGCCTTCTTTTCCAAGTCATTACATCAGCCTCCTCGAAGTCACAAGTATGTCGTTGCATAATCCTTCCCCAAATAATTGCCTTGTCGCTTCCTCCCAAGCACCTCCAACCCTGCTCCTCCAAAATCACCGCCAAGTCGCCTCATTCTCAAAGTCACTGCCAAGTTGCCACGTCGATGTCTTCAACATGTTGCCTCCTTCTCTAAGCCACTGA

Protein sequence

MLPPPQIIVMLPPPCLSYVASSSKPLPCRLFLNVTDMLPRLSHCHVASSKPLPCRIHQATAKSAQANAMSVAHNIVQATTLFHPPSHFQVTDMSPLPRNYQVDALLVAAMSPPTQSHKQVAMSPPTQSHKQVATSMLPPYCPLLQATDISPLRQSHRHVASSISFQPYVLLQTKAMPPRPQITAMLPPPCLRHIASSSKQLPCLPYLKVTPMLPPPSHCHVISIKSSLCCLLLVTFKPSFPSHYISLLEVTSMSLHNPSPNNCLVASSQAPPTLLLQNHRQVASFSKSLPSCHVDVFNMLPPSLSH

Homology

[Close]

BLAST of Lag0021655 vs. NCBI nr
Match: XP_041743042.1 (extensin-like [Coregonus clupeaformis])

HSP 1 Score: 60.1 bits (144), Expect = 3.9e-05
Identity = 99/324 (30.56%), Postives = 128/324 (39.51%), Query Frame = 0


Query: 3   PPPQII-----VMLPPPCLSYVASSSKPLPCRLFLNVTDMLPRLSHCHVASSKPLPCRIH 62
           PPP +         PPPCL + ASS++P      ++ T   P L H   ++  P P  +H
Sbjct: 100 PPPSLFHPASSTQPPPPCLLHPASSTQP------VSSTQPPPSLHHPASSTQPPPPSLLH 159

Query: 63  QATAKSAQANAMSVAHNIVQATTLFHPPSHFQVTDMSPLPRNYQVDALLVAAMSPPTQSH 122
            A+  S Q    S+ H    A++  HPP        SP P        L     PP+  H
Sbjct: 160 PAS--STQPPPPSLLH---PASSTLHPP-----PSQSPPPSLRPASTTL---PPPPSLLH 219

Query: 123 KQVAMSPPTQSHKQVATSMLPPYCPLLQ-ATDISPLRQSHRHVASSISFQPYVLL----Q 182
              +  PP  S    A+S LPP   LL  A+   P   S  H ASS    P  LL     
Sbjct: 220 PASSTLPPPPSLLHPASSTLPPPPSLLHPASSTLPPPPSLLHPASSTQPPPPSLLHPASS 279

Query: 183 TKAMPP---RPQITAMLPPPCLRHIASSSKQLPCLPYLKVTPMLPPPSHCHVISIKSSLC 242
           T+  PP    P  +   PPPCL H ASS+  L   P     P  PPPS     S+  +  
Sbjct: 280 TQPPPPCLLHPASSTQPPPPCLLHPASSALFLH--PASSTQP--PPPSQSPPPSLHPAST 339

Query: 243 CLLLVTFKPSFPSHYISLLEVTSMSLHN-----PSPNNCL--VASSQAPPTLLLQNHRQV 302
                +  P    H  S  +    SL +     P P + L   +S+Q PP  +L      
Sbjct: 340 LPPPPSQSPPPSLHPASSTQTPPPSLLHPVSSAPPPPSLLHPASSTQPPPPSILHPASST 399

Query: 303 ASFSKSLPSCHVDVFNMLPPSLSH 307
            S   SL    V     LPPSL H
Sbjct: 400 QSHPSSLLH-PVSSTQPLPPSLFH 399

The following BLAST results are available for this feature:

BLAST of Lag0021655 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_041743042.1	3.9e-05	30.56	extensin-like [Coregonus clupeaformis]	[more]

BLAST of Lag0021655 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0021655 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0021655 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0021655.1	Lag0021655.1	mRNA